rna1569, rna1569 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1569
Unique Name	rna1569
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2989
Alignment location	CM002457.1:955204..958391 +

Link to JBrowse

Properties


Property Name	Value
Product	nad-dependent epimerase dehydratase
Orig transcript id	gnl\|cribi\|Naga_100007g4.6482.mrna
Orig protein id	gnl\|cribi\|Naga_100007g4.6482
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:955204..958391 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g4	gene1509	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1569	rna1569-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29155.1	cds1565	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:955204..958391+
coding sequence from alignment at CM002457.1:955204..958391+

mRNA sequence

>rna1569 ID=rna1569|Name=rna1569|organism=Nannochloropsis gaditana|type=mRNA|length=2989bp
GCATCAGGTCGCCTGGGTCCAGGTTTCCTTCTGTCTTGTGCCTGAGCTGT
CCGTCAACGCACAGAGCTCGCACCCTTCACCATACTTTTTCTTCTCCGGT
ACAGCTTGTCTGCTGTTCCGCGTCGTAGGTCGCAGGAAAAATGGGCATCC
GTATTATGGTCAAAGGTGGGGTTTGGAAAAACAGTGAAGATGAGATTCTG
AAGGCCGCGGTCATGAAATATGGCCTGAATCAATGGCCTCGCGTCGCGTC
GTTGCTCAATCGCAAGTCCGCAGCTCAATGCAAGGCGCGGTGGTACGAAT
GGTTGGATCCGTCCATCAAAAAAACGGAGTGGACGCGCGAAGAAGAAGAG
AAACTTCTGCACTTGGCCAAGATCCTGCCTGCGCAATGGCGGACCATCGC
CCCCATCGTGGGCCGGACGCCTGCGCAGTGCCTGGAACACTACGAGCGTC
TCTTAGATGCTGCCCAGCAGAAGACGGGGGATATGGACGCAGGGGAGATC
AAGGACGATCCTCGGAAGCTCCGCCCGGGAGAAATTGACACGGCGCCTGA
GACAAAGCCGGCACGACCGGACCCGATCGACATGGACGAGGACGAGAAGG
AAATGCTTTCGGAAGCCCGGGCGCGCCTCGCCAACACCAAAGGGAAAAAG
GCGAAACGAAAGGCGCGCGAGAAGATGTTGATGGAGGCGAAGCGATTAGC
ATCGCTGCAGAAGCGGCGAGAGCTGAAAGCGGCTGGTTTGGAATTGAAAA
TGCGTGAGAAGAAGCGTAAGTACATTGACTACGGGCGTGAGATCCCTTTC
CAGCGCACGGCGCCCGCCGGCTTTTACGCGACAGGGGCGGAGAAATTGGA
GGGCGAGAAGCAGGCTCTGGACCCGCGATTTGAGGCGCTGCGTGTAGATA
AGATGGAGGACGAGCGCAGGGACGAGGAGGAGTCCCGGCTTCGGAACCAA
GACAAGAAACGGCACAAGAAGCTCGTGCAGGAGAACCTGCCTCAGATGGT
GCAAGCGCTCAATCAGTTGAACGACCCGGCTTCGATCCGACGGCGCGTCC
CACTCTCCCTCCCGGCCCCCCAAGTGACGGACAGGGACCTGGAAGAGATC
GTGAAGGTGGGGGCGCAGGCGGCCGCCGTGGGGGGGGGGGAGGGGGCGAC
GGCGGGGCTTTTGGGGGACTACCGGGACCGGGCTACCCCGTTGGCCACGC
CCATGCGGACACCGAGCACGGCCCCGGGGCAGGATGTGGTCATGCAGGAG
GCGAGGAACTTGCTGGCGATGCGGGCGGCCGAGACCCCGCTTCAGGGGGG
GGAGGCGGTTATGAGCCGGTTGGAGGGAGGGACGGGTTTTGAGGGGCACG
AGCCGCGGGGTTTAGGTGGTGGAGGCATGACTCCCGGGGGCGGAATGACG
CCGATGACGGCGAGGAACGAGGAGGGGGGGCGGACGCCGCTCTCGTCGGG
ACGGGTGGGCGGGTCCTCGGTGGCTTCGATCAAGTCCCGGGCCCACGCGG
CCGGTGGGGCGACGCCGATGCGAGACGAGTTGGGGTTGAATCAAATGGGG
GGCTCGGAGGAGCAGCAGCAGTTGATGGTGATGAGTGAGAAGCGCCGGCA
GAAGGCGCTCCGGGCTCAGCTGGCGGAGGGCTTGAGGAGCTTGCCGGAGG
CCCAGTACACGTACGAGATCTCGGTGCCGACGATGGAGGAGGAGGAGGAG
AGAGTGACGGACGTGGGGAAGGAGGAGGACGCGGCGGACCGGGACGCGCG
CATGGCGGCCAAGAAATTGGCGGTGGAAGAAGCGGAGCTGGCACGACGGT
CCGCGGTCTTGAAGCGGGGGCTGCCCCGGCCACGAATTGTGGACCCGGAC
ATGTTCGCATCTCGGGTCCGGGCCGCGACAGCCGAGGCTGACGAGATAGC
GGCCGCGGACGCGATGGTGCAGCAAGAATTGTTGGCTGTGTTGCGCGCGG
AGGCGGCCAAGTATCCGGTCAGAGAGGCGGGGGGGAAAGGAAATGGAAGA
AGCAGTAAGGGAACAGACGGGGACAGGGGGGTCCTTCCCATCATACCACC
GCAAATGTTGAGCACTGCGCGTGATCTTGTGGCAGAAGAAGCGGCGAAGC
TCCGAAAGGCAGTTGATTCTTACGGAGGGGAGGGTGGAAGCGAGGAAAGT
GGAAAGGGCGAAGGGGCGGGTGTCGACTCGCAGGGGGACATGTGCCCAGT
GGCATTGGAGCGAGACTGGCTGAAAGGATACAACGATCTTGCGTACTTTC
CTGGCCGCCAGGCATTTGGGAGGCTGACAGGCGCCAGCAAGCAGGATCGG
CTGGCCGCAGTTGTCCACGAATTCAATACCTTGGCCGGTCACGTGGAGAA
GGTTGGGAAAAGGGCGAGCAAACTCGATACACGCTTAAATCTGGCCACTG
GTGGCTATGTGAAACGCGCAACAGCGTTGTTGCACGGTGTGAGCGAGGCC
CTAGACCAGATAGATGAGATGCGTTTGGAGGTGGGATGTTTTCGCAGGCT
GAAGGCCATGGAAGAGAAGGCGCTTGTGACACGCGTGGCCGAGGTAAATG
CGCAGGCAGACAGTGTGGCCAAGCGGGAAGAGCAATTGCAGCTGTCTTAC
GTGGAGTTGCTCGACGAAAGGGATCGATTGTTTGGAGTGCTTCATGGGCA
CGAAGGCGAGGAAGATAGAGGGGAGGAGCACAATGGTTTGAACGGCAAAG
TGACAGTGGCGGAAGAGTGACAGAGAGGGGAAGTATAGCAGCGAAGAGAG
CCCCTATGCTCTCGCTGAAAGAAATAAAAGCTAACGAACATATGGGTTAT
TTCCCGGGGATACAGGCAGGTCGATTGAATTGACTTTTCACGAAACCAGT
CGACGGCAACCCAGGTTGGGAGGCTGAAATGCCGTGTTTGTAAAACATAT
CCACTTTTTCATTACATCAAACATGATCGCAAAAGAAGGTGGCGTTGTAG
GAAGTTGGAATACGGGAACGCGAATAAAGGATAAATTTC

protein sequence of rna1569

>rna1569-protein ID=rna1569-protein|Name=rna1569|organism=Nannochloropsis gaditana|type=polypeptide|length=521bp
MTYEYVHQRQQHDSSSDMDTALLVPDVTSIPMPLRAESLRKLEVVGSCNG
LASTQQASGASDTGEGGNRRSSPAFSAATSRADKAENVGEENDDQSRTSG
SDLVPTTTDDSDEEDTSSLATDETPDHLQRHADSFLSVDRGSLLAPPVEG
GKKVLVTGGAGFVGSHVADHLLSRGDAVVVVDEFNDYYDTSLKRANVAHL
LAKHGSARLRVVEADICDAHAMEQLFITERPRHVVHMAARAGVRPSIDDP
FIYIHSNMLGTTRLLELARIHGNDCFVWASSSSVYGGSSLEEFGEDDYVD
NPVSPYAATKKACELMTHTYHSLYKMNVTGLRFFTVYGPRGRPDMAPFKF
VDRVSRGLEIQQFGDGSSSRDYTYIDDIVDGVVRALDRPLGYQIFNLGNG
SPYRLSDFIRLVEKNVGKAAVIKVLPDQPGDVPRTCANISKAQELLGYQP
KVSFEEGIARTVDWYKGWRAEKSMEAEKEEKKTREGKAGKKADKSTKGVQ
PGNMARVASAASVFSQGGLSG

mRNA from alignment at CM002457.1:955204..958391+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1569 ID=rna1569|Name=rna1569|organism=Nannochloropsis gaditana|type=mRNA|length=3188bp|location=Sequence derived from alignment at CM002457.1:955204..958391+ (Nannochloropsis gaditana)
TATCCCACCTCTTAGATAGTGACCAAACTGCGAACAATGTGTCAATGACG
GCGGCTTGGCATAGCGTAGCGTTCACAAATTGCGTTGCTGTGGACGACAC
ATTGCAGCATTGCTTAGTTTGTCCTGACTCAACCTCACTGACTAATACCC
CGTCCTTGCGTACTTACACACCAATCTACAGTGTTTTAAGAGCTCACCAA
ACCCCGCTTCATTTAATCGAAGCGCCCGGCTCCGCGCGTCACATCTTTCT
CGCGCACAAGATTTGCACCTCCTGTCAGGCGGAAAGCAACCTCCACGCAA
GCACTTTATAGAAACGAATCTCTTGGCTCCCGTTCACTTACGGGAACTAG
TCGAGGGCTTTGTTTTGCACATCACCTAGCACCACGTCTCTCATCACCGC
CGCATCCTCGTGCTCGACTCACCGCACCCTAACTGGGTTTTTGCACTCTG
CCTCTCTCGTCGAGCTCGCTGTCCTAGCCAGCCACTTCTTGAGCCAAGTG
CACCTTACCGGCCCCAAGGCCGCCTTCCATCACAGTCAAGTACACGGGGG
TACAACCGTCTAGGTTCGGTACTCGTTCCAGAggcagcaaaagcagcaaG
CCCTTTTTACCTTCTTTTCAAGCGACCGAAATATGACGTACGAATACGTA
CATCAACGTCAGCAGCACGACAGCAGCTCCGACATGGACACAGCCCTACT
GGTGCCTGATGTCACAAGCATCCCCATGCCTTTACGAGCAGAATCTCTTC
GTAAACTCGAGGTAGTGGGGTCCTGCAACGGCCTCGCCTCGACCCAGCAA
GCCTCAGGGGCCTCTGAcacgggcgaggggggaaaccGGCGCAGCTCTCC
TGCTTTCTCGGCAGCCACAAGCCGCGCAGACAAAGCAGAGAATGTTGGGG
AAGAGAACGACGATCAGTCCCGGACATCGGGCTCCGATCTggtccccacc
accacagacgacagcgacgaagaggacacctcctcgctcgccacGGACGA
GACGCCCGACCACCTGCAGCGACACGCTGACTCCTTCTTGAGTGTGGACC
GTGGTTCTCTGCTCGCTCCTcccgtggagggcgggaagaaagtCCTGGTC
ACGGGCGGGGCCGGATTCGTAGGTAGCCACGTGGCGGACCATCTCTTGAG
CCGCGGGGACGCCGTCGTCGTGGTGGACGAGTTCAACGACTACTACGACA
CCTCCTTGAAGCGCGCCAACGTCGCCCACCTCCTGGCCAAGCATGGGTCG
GCGCGTttgcgggtggtggaggcggacatATGCGACGCGCATGCGATGGA
ACAACTCTTCATCACAGAGCGGCCCCGTCACGTGGTGCACATGGCGGCGC
GTGCAGGGGTGCGGCCGTCCATCGATGATCCTTTCATCTACATCCACAGC
AACATGCTCGGGACCACGCGCTTGCTGGAACTGGCGCGCATCCACGGCAA
CGACTGCTTCGTGTGGGCGTCGAGCAGCTCGGTGTATGGGGGGTCGAGCC
TGGAGGAGTTCGGCGAGGACGACTACGTGGACAACCCGGTCTCTCCCTAC
GCGGCCACCAAGAAGGCCTGCGAGCTCATGACCCACACCTACCACTCGCT
CTACAAGATGAACGTGACCGGCTTGCGCTTCTTCACGGTGTACGGCCCCC
GGGGCCGGCCCGACATGGCGCCCTTCAAGTTCGTGGACCGCGTCTCCCGC
GGGCTGGAGATCCAGCAGTTTGGAGAcggatcctcctcccgggacTACAC
CTACATCGACGACATCGTCGACGGCGTGGTGCGTGCCCTGGACCGGCCGT
TGGGCTACCAGATTTTCAACCTGGGCAACGGCTCGCCGTACCGCTTGTCG
GACTTTATCCGCCTGGTGGAGAAAAACGTGGGAAAAGCGGCGGTGATCAA
AGTCCTGCCGGATCAGCCGGGGGATGTGCCTAGGACGTGCGCGAACATCA
GCAAAGCCCAAGAGCTGCTGGGTTATCAGCCCAAGGTGTCGTTCGAAGAA
GGGATCGCGAGGACTGTCGATTGGTACAAGGGTTGGAGGGCAGAGAAGag
catggaggcggagaaagaggagaagaaaacccgggagggaaaagcgggaa
agaaggcggaTAAGAGCACGAAAGGCGTGCAGCCGGGAAATATGGCGCGC
GTAGCGTCGGCGGCCTCGGTCTTCAGCCAGGGAGGCTTGAGCGGTTAGCG
TCACCCTGCAGGGGCGTGCGCCACGGCGATATTGATACCGTGGGATTTTG
ATGGAGTGCGCACACTATAGAGataagaagaagaaaaaagctgACGAGAA
ATTTAGTAAGGTACATGAGTCAATGACCTAGAGGCACATGGAGGCACGGG
TTTGTGGTATGCAGGAAAGTGGCGAGGAACCGCCAAGAAAACAGAAAAAG
ACGAGAGAGGCACGACTGCTATTAAGCATTCTTGACGCATTGCTCTCACT
GTCGCATGTATAGAATGGAGTTTTGCCGCAGGGCTAGCGAGCTTAGCGAC
AGTATGCTTGTTTGCGGTTTGGTCTCGAAGGAGACGCCTTTCCGTCCCTG
GCCTTTGTTGCCGTTGCTGGCCGTCACATTTGTGTACATATGGGATATGA
ATACGCTACCGAACAAAATCTAAAaacaagaaaggaggagcagcctcGGA
GATAGGAATGATATCGCTCCACTGACGgtgaaagtggaggagggcttgcC
TGTGTCGGAACGaggatgcaggaggaggaccagaaCAGAGTTGGGGTTTC
GGTGTTTCGGAACGCAGCTGTCTCTTCGTGTTGTCTAAAGCCGAATCTCT
AGAAGTAACGTGGAGATCGGGACAGATGCGGAAAGGGGctgcaagaaaag
agaaTCGAAATTGGCAAACATATGACCGTTTTGAGCGATCCCTGCACTTG
GGGGTGACTGAAAACATAAGAATTAGTAAGTAGTGAAGTTCACATGTGCG
TGCGGTGCAAGTCGAGCAATTTGTGGCTTCATTTCGACGAGAGTgcaaaa
aaaataaaatgagACATGATGTTAGACTGTCGTCAACATGAGAGCCATCC
CTTTACGCGGGTGGGGCCATTTCTTCTCCGATGATCATCGGAATATAGCC
CTTCGCTCTCGGCCCTCTAAAAAATCTCGTCTGGCGCATTCACGTCAGAA
GCGCCCCGGGcgtcgcccttgtcctctccctcccgtcc

Coding sequence (CDS) from alignment at CM002457.1:955204..958391+

>rna1569 ID=rna1569|Name=rna1569|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at CM002457.1:955204..958391+ (Nannochloropsis gaditana)
ATGACGTACGAATACGTACATCAACGTCAGCAGCACGACAGCAGCTCCGA
CATGGACACAGCCCTACTGGTGCCTGATGTCACAAGCATCCCCATGCCTT
TACGAGCAGAATCTCTTCGTAAACTCGAGGTAGTGGGGTCCTGCAACGGC
CTCGCCTCGACCCAGCAAGCCTCAGGGGCCTCTGAcacgggcgagggggg
aaaccGGCGCAGCTCTCCTGCTTTCTCGGCAGCCACAAGCCGCGCAGACA
AAGCAGAGAATGTTGGGGAAGAGAACGACGATCAGTCCCGGACATCGGGC
TCCGATCTggtccccaccaccacagacgacagcgacgaagaggacacctc
ctcgctcgccacGGACGAGACGCCCGACCACCTGCAGCGACACGCTGACT
CCTTCTTGAGTGTGGACCGTGGTTCTCTGCTCGCTCCTcccgtggagggc
gggaagaaagtCCTGGTCACGGGCGGGGCCGGATTCGTAGGTAGCCACGT
GGCGGACCATCTCTTGAGCCGCGGGGACGCCGTCGTCGTGGTGGACGAGT
TCAACGACTACTACGACACCTCCTTGAAGCGCGCCAACGTCGCCCACCTC
CTGGCCAAGCATGGGTCGGCGCGTttgcgggtggtggaggcggacatATG
CGACGCGCATGCGATGGAACAACTCTTCATCACAGAGCGGCCCCGTCACG
TGGTGCACATGGCGGCGCGTGCAGGGGTGCGGCCGTCCATCGATGATCCT
TTCATCTACATCCACAGCAACATGCTCGGGACCACGCGCTTGCTGGAACT
GGCGCGCATCCACGGCAACGACTGCTTCGTGTGGGCGTCGAGCAGCTCGG
TGTATGGGGGGTCGAGCCTGGAGGAGTTCGGCGAGGACGACTACGTGGAC
AACCCGGTCTCTCCCTACGCGGCCACCAAGAAGGCCTGCGAGCTCATGAC
CCACACCTACCACTCGCTCTACAAGATGAACGTGACCGGCTTGCGCTTCT
TCACGGTGTACGGCCCCCGGGGCCGGCCCGACATGGCGCCCTTCAAGTTC
GTGGACCGCGTCTCCCGCGGGCTGGAGATCCAGCAGTTTGGAGAcggatc
ctcctcccgggacTACACCTACATCGACGACATCGTCGACGGCGTGGTGC
GTGCCCTGGACCGGCCGTTGGGCTACCAGATTTTCAACCTGGGCAACGGC
TCGCCGTACCGCTTGTCGGACTTTATCCGCCTGGTGGAGAAAAACGTGGG
AAAAGCGGCGGTGATCAAAGTCCTGCCGGATCAGCCGGGGGATGTGCCTA
GGACGTGCGCGAACATCAGCAAAGCCCAAGAGCTGCTGGGTTATCAGCCC
AAGGTGTCGTTCGAAGAAGGGATCGCGAGGACTGTCGATTGGTACAAGGG
TTGGAGGGCAGAGAAGagcatggaggcggagaaagaggagaagaaaaccc
gggagggaaaagcgggaaagaaggcggaTAAGAGCACGAAAGGCGTGCAG
CCGGGAAATATGGCGCGCGTAGCGTCGGCGGCCTCGGTCTTCAGCCAGGG
AGGCTTGAGCGGTTAG

Synonyms

Publications