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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100007g9.6465.mrna |
| Orig protein id | gnl|cribi|Naga_100007g9.6465 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:944726..947491 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1564 ID=rna1564|Name=rna1564|organism=Nannochloropsis gaditana|type=mRNA|length=5171bp
ATTTTCTTGTTATCTTATACACACATATTCACAGGAGGATTGTAATTAGT
GAAACTGGTGGCAAAGGGTTTATCAACGGTGGCTGCGCTTCTTCCTGCCC
ATCGAACAGCAACTTCAGCCACTCAAACCACATTACTTTTCGCCCTGTGA
ATTTTTGGTCAACTTCATGGCACCACACTTGAGTGGCCTAAATTTTCATT
CATTGGTCAAGAGATCGTCCGCTGCAGCGCTTCTTTTCTCGCTCTTCATC
ATGAAGCTACCCTGTGTCGGTGCTTTCCAAGGAGTAGTGCGGGTTTGGAG
TTCAGCAGTGGCTCCATCGCGAGCTGCCGTACTCACCAGCTTTATGTCTC
CCAAACGACACGTGCTAAAAAGAATGCCAATTTCAGCGTTGTGCAGGCGG
TCAACAATCATGGCGTCCCGGAAAGCGGGGGCGGGACAGGGCGAGCACGA
GGCAGAAGGGGAGGGAATCTCACCAGAATCGATCTCGTCGACAGGAAGCA
ACGCAGGAGGCAAAGGAATCGGGCGCGGACCCCGAAATCGACGGAAAATA
GCCGTAAGCGCGGAAGAGGAAGAGTTTTCAGCCCTGTCCGACTCGAGGAC
CTCGGTTTCCGAAGAGAAGGACTCGATTCGAAGGCCGCGGGTCATTTCTC
GCCCTCCCTCCCGCCCCGTCAAGCGAACGATGACCATCAACCCTAATTGG
CGGGCGCATGGAGGCCCTGAGAACAGTATAAAGGGACCGGAGGAGGCCGC
TTCGTCGTCCTCTGGTACCGCGGGGAGCGGAAAGGCCCGTGTGGGAAAGA
ATGGGCCGCGGGGTGCGAGTCCCCTGGGGGCGGAGGTACCCCGCTATGTG
GAGGATGAGGATGAGGATGGGATCACGTTCCCGAAAGATATGGTAATCCG
AGGCTTGGATAGCCAGAGCTACGAGGAAGCGCGCCGACAGGCCGTGCTGA
GCGATGACGAGGGCGAGGAGGAGGAGTGGGCCGACGAGGGGGTCATGGTG
GAGGAGGAGGAGGGGGAGGACTTTGACGAGGAGGAGGAGGAGGAAGACTT
TGACGAGGAGGAGGAGGAGGAAGACTTTGACGAGGGGGACGAAGAGGAGG
AGGACGGCGCTCACCTTCCCCCAGTGCGGCCCGTGTCGATGGAGGAGCGC
CTCCGCCTGGCGGAGTCCGGCAATATCTTCAACCCCTACGTAGCCCGGAT
GCACACGCGCGCGGGCACCGGGGAGGGGCCGTCTGGGGAGGCGGAAGACC
CTGGCCCGATGGACGGGGGCGGTTTGCGGTTCTTGGAGGAGGATGTGAGC
CCGGGGGAGAAAAGGGAGGAAGCGCGCCGGGCCCAGGCGCCCTCCCTGCC
CGTCAAGTTCCAGTACAAGGTGGTGGTGGGGGCCGGGACGTGCCCGGGCT
GCGGGAACGCGTTTCAGACCAAAAATGAATCCTCCCCCGGCTTCCTCCCC
CCCGACGTCTACGAGCGGCTTCAGGCCCAGATGACGGCGCTGCGACCAGG
CGCTCCCCGAAAGCCGAGGCCGGACGCCCCCCCCCTCTCGAAGTCAGCGG
CAGGGGCGCTGCGGAAGAAGACGGAGACGAGGGGGGAAGAGGGGGATTTG
TTCCAAGGCCTGAGCGCAGAGGAGGAGGTGGAAATGCTTTTGTCGGGCAA
GAGCCGTGAGGAGTTTGAAATAGAGAGAGCGGCGGGGAGAGGGAGGGAGG
CCCAGGGCGGGGAGGTAGATCTTGACCTCGACGAGGAGGGGAAGGAAGAG
AAGGAGGGAGAGGGAAGGGAAGGGGAAGAAGGGGGGGAAGGGGAGGAGGA
GGAGGAAGAATTTCGTGCGGTAATTTGCCAGCGGTGCCACAAGCTGAAGC
ACTACGGGGACGTGGAGGACGCCCTGCGCCCGGGGTGGAGCGCGAACGAG
CTGTTGACGCCGGAGCGCTTCCGGGAGTTGGTGAGCGTGGTGCGACGGAA
ACGCTGCGCCGTGGTGTGTCTGGTGGACATCTTCGACTTCCATGGGTCCC
TTCTCTACAACCTGCCCCGCATCGTGGGCTCCAACCCGGTGCTGGTGGCC
GTGAACAAGGCTGACCTCCTCCCCGCGGACTTCAGCCAGGACCGAGTCCG
GATCTGGGTCAAGCAGGAACTGGAGAAGGTGGGGATGACGGACGTGAGCA
CGCGCGACATCCACCTGATCTCCTGCAAGACGGGGAACAACGTCCGGCCC
TTGCTGCGGTCCATGAAGCAAATGGCGCGCCAGCGCAGGCGGGATCTGTA
CGTGATCGGCGCGGCAAACGTGGGCAAGTCGACCTTCATCAACCGGCTGA
TTGAGCTGGGTCGGAGTGGAGGGGACGCGCAGAGGAAGAAGAAGAAGAAG
CAGGGGGAACAGAGCAAAGGCGGGTCTCTGGTCACGACGAGCGCCTTACC
GGGCACGACCTTGGACTTCATCGAGGTGGACCTGGGGGACAAGGTCTCCC
TCTACGACACCCCGGGCCTCATCTTGCCGCACCAGATCACCACGCTGCTG
AACACGGAAGAGCTCAAGGCAGTAATTCCCCAGAAGCGCATCAACCACGT
GACCCTGCGCCTGAAGGAGGGCAAGAGCGTCCTCCTGGGCGGGCTAGTCC
GCTTGGACATGCTGGAGGGTCGGCCCTTCCTCTTCACATTCTACGTCTCG
AACGAGGTCAAGCTCCACCAAACAGCCACGGACCGGGCCGGGGAATTTTT
GGACAGTCACCTCGGTGAACTAATCTCGCCGCCCTTCACGCAGGAACGCC
GAGCGGCCATGGGGCCATGGGTACCTCGTGACTTCGAGATCGAAGGGACG
GGCTGGAAAACCTCAGCCGTTGACATAGTCATCTCTGGCTTAGGGTGGAT
ATCTGTCACCGGCGCATTGGACTGTAAGGTCCGAGTCATGGCACCGGAGG
CGGTGGGTGTGCGTTTGCGGAGTCCATTGATGCCTTACGAGACCTGGGCG
ACAACAGCCAAGTGGACGGGGCTCAGGGCCGTCAAGAGTGACAAGCAAAA
AGGGAGCAGCAGATAGGAAGAGGAAAGTTTTACCCTGTCGTGAAAGTGCT
GATGAAGATAAACTATCAAGAAAATAATCATGTGCATTCACAAAAACAGC
TCGTTGTTGTTTTTTTGTTTCCTCTTTGATCAGACCTTTGGTGATATTCG
ATTCTATTTCTTGCCCGCATCTCATAGGATTGCGATTGTAATCTCCGCAA
CAGCGTTCAACCAGAAAACGTACAACGATCTGAGCAAAGGATAGATGGCT
AACTCTGGGAGGTCTTTTGCTTGGTATTTGTAGCCGGAAGATGGCTTTGT
GGTCCAGGGCTTGTATTTTCTGGCCCCCACGACTGATCTACGTCCAGAGG
GGTCTGAGGGACTCCATGCAAGCCACCAAGCACGTACATTTCACACGCTC
GTACATTACGGCATTTTACGCTCCGATATCGCGCCACGGGAATGATTGGT
CACGCCCATCAAAGCACTCGCCGGTTCTTTCATCTCTATACTCAAATATC
CTTACCCTTCCTCGACAGTCGACGCACGATGAACTTCGCGGACGCTGCCA
CGACGCACTCAGCCGTGGAAGGCCATGCCTCCCAGGGGACCGAAAGGGAG
GACCAAGCTGGTGGTGACGCTGGAAGGACCTCCCTAGCCATGGCATGACC
GGCCCTCTTCACGACGTGAAGGACACAGAAGACGACACCGACTGCGTTGT
TTATGTCCTCAATTTTCACCCCCGCAACACGGCGGACAAGGAAGGCAAGA
TCAACAATGCGATCAACTTCGCCGATGCAGAATTGGAGGAACATCACGTC
CTCCTGGGAGTGTTTCTTGGTCAATGTGTCGTTTCCCACCTCCTTCCACC
CAAACGCAATTCTAATACCTTGTACCTTGTTGCCCGAATACCAACACCTC
GTACCCCTAACACGCACAACACGCTTTCCGACAACGCCGGAAGACTCCCC
GTCCGTACACGCGACCCCCTTAACCGCGCCGACATCGAGCCGGACTACTA
CAAGCCCTTCGTCTCCCCTGAGCTTGTCAACAAACGCAATGCAGAGGCGC
ACAAGCACAATTCGCCTCTACTCCGCGGTGACCTAAACGTGACGTACGAG
CGTACACAGGACAAGGGCTTCTTGGAACTTGGCCGTGCGCGGAGTGCCAC
AAAATTTGAGTCCTGGCTTGGTCTTCGCATCATAATCGAAGGTCCAGCTT
TGAACGACCCCGGCCCAAGCAACACGAGCAGATCGTGTGGGTCGATGAAT
ACAAGTTTACCAATGGGCAGGATTTCAAGGTGTTCTTTTGGGGCGGGAGC
CTGTGGCAGCTGTGCAAGAAGTGGGCCGATGCGAACCGCACTCAATCGGG
GGGAGACGACATGGTGCGTTTTTGTTTCGAGGCCCACTCCGCTTGGTGTT
CGTGCATGCTCACAACGTCCAGACGCACCTCTTCTAGACACAGGACCGGG
CGGTGGAGGCGGGCTACATAGCGCCATCCTTGGATGTTGGCGCCACGAAA
GCCCTGGTAGCATCCAGTGGAATAGAAACCCTCTTCCAGCACGTGGCTGT
GATAAAGAACAAAGCAAAGGATCTCGATTGAGGAGGCGGCTTTGGGAGAG
CAGCAGCGGGAGATGGTCCGGAGGACCAACACAATGGGGGAAATCATCGG
TGTTTGTCTTGCTCTCCGGACCCTGTACAACCTTTAAAAATTGCCCCGTT
CTCGCCTTTCACGGAGCAAGATGGCGCTCGGCGTTGCAAGCGCCCAGCAC
AATGCGCTCGCAGACCACGCCGGCATAGACCTGTCGGACGTCGCCTCGCT
TGACTTCCACAGCAGCAGCGGCGGCCGCATGCACTCACGGGGGGATCACA
TCGAAACCCGCGCAGACGCAGAGGACGCGAAAAGCATCCTCAACCGTCTG
AAGGGTGGGAAAGAAAACATCCACGAGCTTCGGCAGTGTGATTTCTCACC
CGTACGCCCCAAGCCGGGGACGAAAGGGTACTCTCCACAAGAATTTTTAT
TTCGTCGGCCGTGAAGCGCGTCAAGTGCTCCACGTGAATGCGGAGGAAGG
CGAAAACGGCATGGAGGGTACGCGGCCTTGTAGGATCGTTGTACCGTGGC
TCAGGGTTCGCACTCACGCCATTGCTAAGGATGGTTAAGAAAGTTGAGCT
AAAAAAAAACATCCCTAACCA back to topprotein sequence of rna1564 >rna1564-protein ID=rna1564-protein|Name=rna1564|organism=Nannochloropsis gaditana|type=polypeptide|length=246bp
MISPIVLVLRTISRCCSPKAASSIEILCSVGMASINERNEQPEMHARKGK
MSNHGCALTCSLSQPRAGRGFLFHWMLPGLSWRQHPRMALCSPPPPPGPV
SRRGASGRCEHARTPSGVGLETKTHHVVSPRLSAVRIGPLLAQLPQAPAP
KEHLEILPIGKLVFIDPHDLLVLLGPGSFKAGPSIMMRRPSQDSNFVALR
ARPSSKKPLSCVRSYVTFRSPRSRGELCLCASALRLLTSSGETKGL back to topmRNA from alignment at CM002457.1:944726..947491- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna1564 ID=rna1564|Name=rna1564|organism=Nannochloropsis gaditana|type=mRNA|length=2766bp|location=Sequence derived from alignment at CM002457.1:944726..947491- (Nannochloropsis gaditana)
CGAGGAGGTGTTTTGGTTACTGGACACCATTATTAGGGTGGTATGTGTGT
GTGTGTATTGGGGGGTGTCGCTTTTTAGACCCCGTGACTACGGACCCCGC
GAGAAAACGAATTGACCAAGGGAACACGCGCGCGAGAAATGAGGGTGTAC
GAGACCTTCAGAACATGAATAGTTCTCGGGAGGCCAACCGACGATCGAAG
AATGACATGGATCGATTGAATTAAAACTGTATTTCGACTCCACGTGAGCC
TCCCTTTCTCTGGACTCTCTTGCTTGATATTTGTCGGCTTTCTGTCGCCC
CATCGAGCCGTAGAAATCAGGCCCACGAACAGGGAAGGCACGCACCTTCG
AAAAAGTGCGAAGGTGCGAAGGTGCAGGTGTGAAAAGGTGCGGTGCTGCA
CCTCGAAGGCAAGGTGCGCACCTTTTTTGCCCTTCCCAGCTTTGCGGCCA
TTTTAGATACAACTTTCTCACACTCACGCTCTCACAACATTGTTGAGAAT
GAGAAAGTGCATATTCATCGGAATGCCTTAAAAGAGCAAGAGCAATGGAA
TGACGCTAATATTGGGGTTGTATGTGGAAGTAAAGTGTTTCATGGGTGGG
ATCCAGGATTGACGACTCGGAGTCGCCGAATGGTTAGGGATGTTTTTTTT
TAGCTCAACTTTCTTAACCATCCTTAGCAATGGCGTGAGTGCGAACCCTG
AGCCACGGTACAACGATCCTACAAGGCCGCGTACCCTCCATGCCGTTTTC
GCCTTCCTCCGCATTCACGTGGAGCACTTGACGCGCTTCACGGCCGACGA
AATAAAAATTCTTGTGGAGAGTACCCTTTCGTCCCCGGCTTGGGGCGTAC
GGGTGAGAAATCACACTGCCGAAGCTCGTGGATGTTTTCTTTCCCACCCT
TCAGACGGTTGAGGATGCTTTTCGCGTCCTCTGCGTCTGCGCGGGTTTCG
ATGTGATCCCCCCGTGAGTGCATGCGGCCGCCGCTGCTGCTGTGGAAGTC
AAGCGAGGCGACGTCCGACAGGTCTATGCCGGCGTGGTCTGCGAGCGCAT
TGTGCTGGGCGCTTGCAACGCCGAGCGCCATCTTGCTCCGTGAAAGGCGA
GAACGGGGCAATTTTTAAAGGTTGTACAGGGTCCGGAGAGCAAGACAAAC
ACCGATGATTTCCCCCATTGTGTTGGTCCTCCGGACCATCTCCCGCTGCT
GCTCTCCCAAAGCCGCCTCCTCAATCGAGATCCTTTGCTCTGTAGGGATG
GCGTCCATAAATGAGCGGAACGAGCAACCAGAAATGCATGCACGGAAGGG
TAAGATGTCCAATCATGGATGTGCGCTTACTTGTTCTTTATCACAGCCAC
GTGCTGGAAGAGGGTTTCTATTCCACTGGATGCTACCAGGGCTTTCGTGG
CGCCAACATCCAAGGATGGCGCTATGTAGCCCGCCTCCACCGCCCGGTCC
TGTGTCTAGAAGAGGTGCGTCTGGACGTTGTGAGCATGCACGAACACCAA
GCGGAGTGGGCCTCGAAACAAAAACGCACCATGTCGTCTCCCCCCGATTG
AGTGCGGTTCGCATCGGCCCACTTCTTGCACAGCTGCCACAGGCTCCCGC
CCCAAAAGAACACCTTGAAATCCTGCCCATTGGTAAACTTGTATTCATCG
ACCCACACGATCTGCTCGTGTTGCTTGGGCCGGGGTCGTTCAAAGCTGGA
CCTTCGATTATGATGCGAAGACCAAGCCAGGACTCAAATTTTGTGGCACT
CCGCGCACGGCCAAGTTCCAAGAAGCCCTTGTCCTGTGTACGCTCGTACG
TCACGTTTAGGTCACCGCGGAGTAGAGGCGAATTGTGCTTGTGCGCCTCT
GCATTGCGTTTGTTGACAAGCTCAGGGGAGACGAAGGGCTTGTAGTAGTC
CGGCTCGATGTCGGCGCGGTTAAGGGGGTCGCGTGTACGGACGGGGAGTC
TTCCGGCGTTGTCGGAAAGCGTGTTGTGCGTGTTAGGGGTACGAGGTGTT
GGTATTCGGGCAACAAGGTACAAGGTATTAGAATTGCGTTTGGGTGGAAG
GAGGTGGGAAACGACACATTGACCAAGAAACACTCCCAGGAGGACGTGAT
GTTCCTCCAATTCTGCATCGGCGAAGTTGATCGCATTGTTGATCTTGCCT
TCCTTGTCCGCCGTGTTGCGGGGGTGAAAATTGAGGACATAAACAACGCA
GTCGGTGTCGTCTTCTGTGTCCTTCACGTCGTGAAGAGGGCCGGTCATGC
CATGGCTAGGGAGGTCCTTCCAGCGTCACCACCAGCTTGGTCCTCCCTTT
CGGTCCCCTGGGAGGCATGGCCTTCCACGGCTGAGTGCGTCGTGGCAGCG
TCCGCGAAGTTCATCGTGCGTCGACTGTCGAGGAAGGGTAAGGATATTTG
AGTATAGAGATGAAAGAACCGGCGAGTGCTTTGATGGGCGTGACCAATCA
TTCCCGTGGCGCGATATCGGAGCGTAAAATGCCGTAATGTACGAGCGTGT
GAAATGTACGTGCTTGGTGGCTTGCATGGAGTCCCTCAGACCCCTCTGGA
CGTAGATCAGTCGTGGGGGCCAGAAAATACAAGCCCTGGACCACAAAGCC
ATCTTCCGGCTACAAATACCAAGCAAAAGACCTCCCAGAGTTAGCCATCT
ATCCTTTGCTCAGATCGTTGTACGTTTTCTGGTTGAACGCTGTTGCGGAG
ATTACAATCGCAATCCTATGAGATGCGGGCAAGAAATAGAATCGAATATC
ACCAAAGGTCTGATCA back to topCoding sequence (CDS) from alignment at CM002457.1:944726..947491- >rna1564 ID=rna1564|Name=rna1564|organism=Nannochloropsis gaditana|type=CDS|length=741bp|location=Sequence derived from alignment at CM002457.1:944726..947491- (Nannochloropsis gaditana)
ATGATTTCCCCCATTGTGTTGGTCCTCCGGACCATCTCCCGCTGCTGCTC
TCCCAAAGCCGCCTCCTCAATCGAGATCCTTTGCTCTGTAGGGATGGCGT
CCATAAATGAGCGGAACGAGCAACCAGAAATGCATGCACGGAAGGGTAAG
ATGTCCAATCATGGATGTGCGCTTACTTGTTCTTTATCACAGCCACGTGC
TGGAAGAGGGTTTCTATTCCACTGGATGCTACCAGGGCTTTCGTGGCGCC
AACATCCAAGGATGGCGCTATGTAGCCCGCCTCCACCGCCCGGTCCTGTG
TCTAGAAGAGGTGCGTCTGGACGTTGTGAGCATGCACGAACACCAAGCGG
AGTGGGCCTCGAAACAAAAACGCACCATGTCGTCTCCCCCCGATTGAGTG
CGGTTCGCATCGGCCCACTTCTTGCACAGCTGCCACAGGCTCCCGCCCCA
AAAGAACACCTTGAAATCCTGCCCATTGGTAAACTTGTATTCATCGACCC
ACACGATCTGCTCGTGTTGCTTGGGCCGGGGTCGTTCAAAGCTGGACCTT
CGATTATGATGCGAAGACCAAGCCAGGACTCAAATTTTGTGGCACTCCGC
GCACGGCCAAGTTCCAAGAAGCCCTTGTCCTGTGTACGCTCGTACGTCAC
GTTTAGGTCACCGCGGAGTAGAGGCGAATTGTGCTTGTGCGCCTCTGCAT
TGCGTTTGTTGACAAGCTCAGGGGAGACGAAGGGCTTGTAG back to top
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