rna1562, rna1562 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1562
Unique Name	rna1562
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2426
Alignment location	CM002457.1:935508..938083 +

Link to JBrowse

Properties


Property Name	Value
Product	methylenetetrahydrofolate reductase
Orig transcript id	gnl\|cribi\|Naga_100007g11.6489.mrna
Orig protein id	gnl\|cribi\|Naga_100007g11.6489
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:935508..938083 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g11	gene1503	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1562	rna1562-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29162.1	cds1558	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:935508..938083+
coding sequence from alignment at CM002457.1:935508..938083+

mRNA sequence

>rna1562 ID=rna1562|Name=rna1562|organism=Nannochloropsis gaditana|type=mRNA|length=2426bp
ACCTGGGTTTGACGAGGTACAAGGAAATGCCGAAGGAAATTAGAAGACTC
GATTGACACGATGTGGATTTTTAGAGCTGAATCAAGGTGCCAATGTCCCG
TTAGTATGACTGCCGTCGATTCGGACGTCGTCTGGGAGAGCAGCGGCAGG
CGGCGAGCGAGCGAGCAAAAAGAGCCCTCACAAGCTTTATGACATCTTGT
GCCCATTTGGCATGGCTGCATGTATGTCATGCATCTTCATGACGTAGCTC
AGGCCGGACATGGTGATGTGTCGTCCGCGTTGATTTGCGCCAAGATATCT
TTTCCTCCAGAGCACTTTCTCTGCTCGGAGGCATGTGCTGCAGCCCCCAG
CATTGTCCTCACGCTCCGAGGGCAAAACGCCTGACTCGGACTGGGGAAGG
GTAAGACCGTAAGGATATCTTTGCACTGGCAATTGGACAAGAGGCTAGGG
GCTTGATCGGTCTGGCCTTGTCAGTGTCTGACCAGAAGCGTGCCTCTAAT
TGTAATATGCTATAGCCTTCTCCTATCTAACCAACCTAAAAATGGTCAAA
TCTCATATTCATTGCGTGTTTCTGTCTGGGGCGATGTAGTCCTTTAAGCA
TCGTTATATGAGCCGTATGCACTTGTCGGAAGCAGTCGGGGGAAAAAAGT
TGTGCAGACCGACCTGTCAGAGCCATATTGCCTGTATACAGGGAATTTCA
TCTTACCCTTCGTCCTCCCCATCGTATAACCTTCCAAAGGGATGTCGACC
GTCCCCAGGGCAAGCCTTCGATTCACGCGGACACTGCGCGGGCCTGGGCA
GCGTCAGATCAGGGGCCGCAACTCGACCCCGCGGTCTCAATCTCGGCACG
CGCTTACGTACCATTCATCTTTGACTGCCGGCATCGCCTCCTGGGGCCCT
GTCGTAAGGCACGCTGCCTCGCTGGCACCTTTGGCATGCAACGGCCTACC
CCGATCCTCTGCCTGTCGCTGCTCATTCTCCTCCACATCCACCCAGGATG
TGCCACCCTTGCCGCACATGGGGGGCCGGCCCTCCGACGAGGAAATGGCG
GCTGAGGACGCGGCGGCGGCGGCGGAAATGGAAGAGAGTCACATGAAGGA
CGGCTTGGCTATCAAGATGGCGACTTCCAGCTTCACGGGGAGAAGGAGGT
TCTACAAGACGGTGGGAGTGCGCCCCTCCTTGGACCCCTCTGGGCGACAG
GTCCACCACTACGAGGTCACCCTGGACGGCTACCCCCTCAAGACCCCCGG
CACCGAGAAAGCCTACCGCCTCCCTACCGAGGGGCTGGCGCTGGCAGTGG
CCCTGGAGTGGGACCAGCAGGTCACGTACAAAGGGGTGGAGCCTACCTAC
ATGCCCCTCACGGGCATCGCCACCATTGCCTTGGACGAAATCGTCTTCAG
CCGGCACTCCACCATTGACCGCTGCCTCCGTTATTTGGCCACAGATACAG
TTTGCTACTGCTTCCCCGAGGAGGAGGACGATCATAAGCTGTTGCGACGA
CAGCAGAAGACCTGGGAGCCCTTACTCGGCTGGCTCCGAGACGAATTTGG
GGTGCACATCACCAAGCCCGCGCATATGCTGGATGTCTGCCACAACAGCC
CGGAAACGCTTCAAAAGGTGAGGATAATGCTCCAGGAGATGGACCCGTTC
ACGCTAGCGGCCTTCCTCTCCCTCGTACTTGACCTGAAAAGCGTGATCAC
GGCGCTGGCCCTCGTCTTCAGACACGTGACCGTGGAGGAAGCCTGCCAAG
CGAGCGCGCTGGAGGAGGCCCATCAAAAGGCCGCCTGGGGCTCCGTTGAC
CTCTATCACGAGCTTGAAGAGACGGTTCTGTACACGCAGACGGCAGCGGC
GTCGTCGTTTTTGTGGTTGTTGCACGAAGAAGAGGCGGGGGACTCAAAGG
AACTGGGAAAGAATGCAGGAGTGATGCCGCATGTGGAGTTGAAGGCTCGG
GTCAAGGCGAGACTTAAAAAGGAATTTCCGGACAGCACGCCCGAGTAGGC
GTGTCTAGGAAAAGAAAACAAGAGGTCACGTGTGAAATATTTCTCTAAGC
TCCTCATCCTTGCGAGGCCCACAGCCTTCTCGCTGGTTTACCGATTCGCT
ACTTGGTCCTCGAACACGGTACCGCTCGCTTTTGTGGTTAGTGAGACATA
AGACTGACCTCGCTCGATCGCAACTAGAGGAAATTATACTCCAGAAGGGA
CACTACGCGTATAATTATTCACTCATATTTTTAACATGCAGCAAAGGTCA
TTAATTGAAATTGGAACATAGGAATCGCGTGCAATTTATCCTCCATGTAA
CATACTCAACATGGCATTTAGTTAATCGATTAAGGGAATAAAAGAAGCGT
ACATTGTATGTGTGATGAAATAAATGTTGCCAAAGCAGGCGCATCGGACA
ATTAATCGCTCTCAGCCTGTTCATCG

protein sequence of rna1562

>rna1562-protein ID=rna1562-protein|Name=rna1562|organism=Nannochloropsis gaditana|type=polypeptide|length=628bp
MKIIDKIKEAEEAAALNPHQKPPTFCSFEFFPPKTAAGVENLYMRIDRLA
SLEPLYIDITWGAGGSTADLSLQIAATAQRYLGQEVLMHLTCTNLDVEAL
KAILNAARQAGIQNILALRGDPPKGASSWESCQGGLGYAIDLVRLIREEH
GDHFCVAVGGHPEGHHHREGLADEGEGATGVDLDKEIEHLKAKIDAGADF
IVTQFFYDVEVYLDYVARCRAAGITCPIVPGVMPIQNYTLFRRMTSFCRT
RVPAEMWEQLAPIKEDEEAVRRWGVSFLTKLCRRLLDADVTPNLIHFYTL
NLEKSVRLILESLGLTATASIRRQFPWRSSKLSSRAGEDVRPINWANRPK
SYLSRTEEWDEFPNGRWGDGRSPAFGELSDYQFVDTSLGSREDRRAMWGE
APLKDVEVFEAFIKYVRAEIPLLPWCEVPLQAETGTISADLVKINKAGFL
TINSQPAVNGALSDDAVFGWGGAGGRVYQKAYVECFTSQENLKLLMELCE
KKPNLHYYAVDVAGNTYSNGSKKATALTWGVFPQCEILQPTIFDPNTFLV
WKNEAFQLWTSIWASIYDDESASNALIHKIHDTYFLVAIIDNDFSSTASM
WSVFREIIDEKEGTPLGGSQHHPQYSLP

mRNA from alignment at CM002457.1:935508..938083+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1562 ID=rna1562|Name=rna1562|organism=Nannochloropsis gaditana|type=mRNA|length=2576bp|location=Sequence derived from alignment at CM002457.1:935508..938083+ (Nannochloropsis gaditana)
CACCTTGATTCAGCTCTAAAAATCCACATCGTGTCAATCGAGTCTTCTAA
TTTCCTTCGGCATTTCCTTGTACCTCGTCAAACCCAGGTTTGGTAGGAAC
GAGTGTAAGAGAGCAGAACACACTAGAAGCAGCCAGAGGAGTCGCCGCAA
GTATCCCCGGGCGCTCTGGGACTGTACGAGGTCTCCAATCGAGCACACTC
CACATTAAAAAAAGCAGAGAAACTTCAAGGAGGTAGCAGATTCACTGAGC
CTTTTTCGTCTATCCCGTGGTCATGAAGATAATCGACAAGATCAAAGAGG
TCCGTTGATGCTCGATCCTAGTGCTGCACTTCCATACACCCTACTCTAAG
TCCATACACCCTACCCTGAGTCCTCCCGTGGTCATCTCGCACTCCATTTC
GTTCATGAATCGTTATAAAATCTGCACATGTCATGAAACAGGCCGAGGAA
GCCGCTGCCCTCAATCCTCATCAGAAGCCGCCCACCTTCTGTTCGTTTGa
gtttttccctcccaagACCGCCGCAGGTGTCGAGAATTTATACATGCGAA
TCGACCGACTGGCCTCGTTGGAGCCCCTTTACATTGACATCACatggggg
gcaggcggcagTACCGCGGATCTAAGTCTGCAGATCGCGGCAACTGCCCA
ACGGTACCTTGGGCAGGAGGTGCTGATGCACTTGACGTGCACGAAtttgg
acgtggaggcgctCAAAGCTATCCTGAACGCTGCCCGACAAGCAGGCATA
CAAAATATACTTGCCTTACGAGGCGATCCTCCAAAAggggcctcctcctg
ggaAAGTTGTCAGGGTGGCCTCGGGTACGCGATTGACTTGGTGCGCCTGA
TCCGGGAGGAGCATGGAGACCACTTCTGTGTGGCGGTTGGCGGGCACCCG
GAGGGTCATCATCATAGGGAGGGGCTcgcggacgagggggagggagcaac
aGGCGTCGACCTTGACAAGGAGATTGAGCATTTGAAGGCGAAAATTGACG
CGGGCGCAGATTTCATTGTCACGCAGTTTTTTTATGACGTGGAGGTGTAC
CTGGACTACGTGGCTCGGTGCCGTGCCGCGGGTATTACCTGCCCCATCGT
CCCAGGCGTCATGCCCATCCAAAATTACACCTTGTTTCGGCGCATGACCT
CTTTCTGCCGGACCCGCGTCCCGGCGGAGATGTGGGAGCAACTGGCACCC
atcaaggaggacgaggaagcggtTCGTCGGTGGGGGGTGAGCTTCTTGAC
CAAGCTCTGCCGGCGGCTTTTGGACGCGGATGTCACCCCGAACCTCATCC
ATTTCTACACCCTGAACCTGGAGAAGTCCGTCCGCTTGATCCTCGAGTCC
CTGGGGCTGACCGCCACGGCCTCGATCCGCCGGCAGTTCCCCTGGCGGTC
CTCCAAGCTGAGCTCtcgcgcgggggaggacgtgcggCCCATCAATTGGG
CGAACCGGCCTAAGTCGTACTTGTCGCGGACGGAGGAGTGGGACGAATTT
CCGAAcgggcggtggggggacGGGCGCTCGCCGGCCTTCGGGGAGCTCAG
CGACTACCAGTTCGTCGACACATCGTTGGGATCGCGGGAAGACCGACGGG
CCATGTGGGGGGAGGCCCCCttgaaggacgtggaggtctTCGAGGCCTTC
ATCAAGTACGTCCGAGCCGAGATCCCCCTGTTGCCGTGGTGCGAAGTGCC
CTTGCAGGCGGAGACTGGGACGATCAGCGCGGACCTGGTCAAGATCAACA
AGGCGGGCTTCCTGACCATCAACAGCCAGCCGGCCGTGAATGGCGCGCTC
AGCGACGACGCGGTCTTtggatgggggggggcagggggacgGGTGTATCA
AAAGGCGTACGTGGAATGCTTCACGTCGCAAGAGAACTTGAAATTGTTGA
TGGAGCTCTGTGAGAAAAAACCAAATTTGCATTACTACGCGGTGGATGTG
GCCGGCAACACCTATTCCAATGGTTCCAAAAAGGCGACAGCTTTGACCTG
GGGGGTATTCCCGCAGTGCGAGATCCTGCAGCCGACGATATTTGACCCAA
ACACTTTCCTTGTATGGAAGAACGAGGCCTTCCAATTGTGGACCTCAATC
TGGGCGTCTATCTACGACGACGAGTCCGCCTCAAACGCCCTTATCCACAA
AATCCACGATACTTATTTCCTGGTTGCCATTATCGACAACGACTTCTCGA
GTACTGCGTCGATGTGGTCGGTCTTCAGGGAAATTATagatgagaaagag
ggaacGCCACTGGGTGGCAGTCAGCACCACCCCCAGTACTCCCTACCATA
GTTTgtcgaggggggaaaggggatcCAAGGATTGAAAGATATGCTTGGAA
TCTTGCGAAGGGCATGTATTTGCAATGTCTTAACATTTCACCCGTTGAAA
CCTGAGCGTCtaaaaattgaaaaaatAACGTTTAACTTTTGAGTGGTACC
GTTTTTAAACCTTAGCCCCTTAGTTTCGTGATGAGGACATGTCGCTCGCT
CTTCCACCTACAAGACAAATTCGGCATCAAGCAAGCAGAGTAGGACACCT
GGATTCTCCTGGAAAAACCGAGTCAT

Coding sequence (CDS) from alignment at CM002457.1:935508..938083+

>rna1562 ID=rna1562|Name=rna1562|organism=Nannochloropsis gaditana|type=CDS|length=3774bp|location=Sequence derived from alignment at CM002457.1:935508..938083+ (Nannochloropsis gaditana)
ATGAAGATAATCGACAAGATCAAAGAGGCCGAGGAAGCCGCTGCCCTCAA
TCCTCATCAGAAGCCGCCCACCTTCTGTTCGTTTGagtttttccctccca
agACCGCCGCAGGTGTCGAGAATTTATACATGCGAATCGACCGACTGGCC
TCGTTGGAGCCCCTTTACATTGACATCACatggggggcaggcggcagTAC
CGCGGATCTAAGTCTGCAGATCGCGGCAACTGCCCAACGGTACCTTGGGC
AGGAGGTGCTGATGCACTTGACGTGCACGAAtttggacgtggaggcgctC
AAAGCTATCCTGAACGCTGCCCGACAAGCAGGCATACAAAATATACTTGC
CTTACGAGGCGATCCTCCAAAAggggcctcctcctgggaAAGTTGTCAGG
GTGGCCTCGGGTACGCGATTGACTTGGTGCGCCTGATCCGGGAGGAGCAT
GGAGACCACTTCTGTGTGGCGGTTGGCGGGCACCCGGAGGGTCATCATCA
TAGGGAGGGGCTcgcggacgagggggagggagcaacaGGCGTCGACCTTG
ACAAGGAGATTGAGCATTTGAAGGCGAAAATTGACGCGGGCGCAGATTTC
ATTGTCACGCAGTTTTTTTATGACGTGGAGGTGTACCTGGACTACGTGGC
TCGGTGCCGTGCCGCGGGTATTACCTGCCCCATCGTCCCAGGCGTCATGC
CCATCCAAAATTACACCTTGTTTCGGCGCATGACCTCTTTCTGCCGGACC
CGCGTCCCGGCGGAGATGTGGGAGCAACTGGCACCCatcaaggaggacga
ggaagcggtTCGTCGGTGGGGGGTGAGCTTCTTGACCAAGCTCTGCCGGC
GGCTTTTGGACGCGGATGTCACCCCGAACCTCATCCATTTCTACACCCTG
AACCTGGAGAAGTCCGTCCGCTTGATCCTCGAGTCCCTGGGGCTGACCGC
CACGGCCTCGATCCGCCGGCAGTTCCCCTGGCGGTCCTCCAAGCTGAGCT
CtcgcgcgggggaggacgtgcggCCCATCAATTGGGCGAACCGGCCTAAG
TCGTACTTGTCGCGGACGGAGGAGTGGGACGAATTTCCGAAcgggcggtg
gggggacGGGCGCTCGCCGGCCTTCGGGGAGCTCAGCGACTACCAGTTCG
TCGACACATCGTTGGGATCGCGGGAAGACCGACGGGCCATGTGGGGGGAG
GCCCCCttgaaggacgtggaggtctTCGAGGCCTTCATCAAGTACGTCCG
AGCCGAGATCCCCCTGTTGCCGTGGTGCGAAGTGCCCTTGCAGGCGGAGA
CTGGGACGATCAGCGCGGACCTGGTCAAGATCAACAAGGCGGGCTTCCTG
ACCATCAACAGCCAGCCGGCCGTGAATGGCGCGCTCAGCGACGACGCGGT
CTTtggatgggggggggcagggggacgGGTGTATCAAAAGGCGTACGTGG
AATGCTTCACGTCGCAAGAGAACTTGAAATTGTTGATGGAGCTCTGTGAG
AAAAAACCAAATTTGCATTACTACGCGGTGGATGTGGCCGGCAACACCTA
TTCCAATGGTTCCAAAAAGGCGACAGCTTTGACCTGGGGGGTATTCCCGC
AGTGCGAGATCCTGCAGCCGACGATATTTGACCCAAACACTTTCCTTGTA
TGGAAGAACGAGGCCTTCCAATTGTGGACCTCAATCTGGGCGTCTATCTA
CGACGACGAGTCCGCCTCAAACGCCCTTATCCACAAAATCCACGATACTT
ATTTCCTGGTTGCCATTATCGACAACGACTTCTCGAGTACTGCGTCGATG
TGGTCGGTCTTCAGGGAAATTATagatgagaaagagggaacGCCACTGGG
TGGCAGTCAGCACCACCCCCAGTACTCCCTACCATAGATGAAGATAATCG
ACAAGATCAAAGAGGCCGAGGAAGCCGCTGCCCTCAATCCTCATCAGAAG
CCGCCCACCTTCTGTTCGTTTGagtttttccctcccaagACCGCCGCAGG
TGTCGAGAATTTATACATGCGAATCGACCGACTGGCCTCGTTGGAGCCCC
TTTACATTGACATCACatggggggcaggcggcagTACCGCGGATCTAAGT
CTGCAGATCGCGGCAACTGCCCAACGGTACCTTGGGCAGGAGGTGCTGAT
GCACTTGACGTGCACGAAtttggacgtggaggcgctCAAAGCTATCCTGA
ACGCTGCCCGACAAGCAGGCATACAAAATATACTTGCCTTACGAGGCGAT
CCTCCAAAAggggcctcctcctgggaAAGTTGTCAGGGTGGCCTCGGGTA
CGCGATTGACTTGGTGCGCCTGATCCGGGAGGAGCATGGAGACCACTTCT
GTGTGGCGGTTGGCGGGCACCCGGAGGGTCATCATCATAGGGAGGGGCTc
gcggacgagggggagggagcaacaGGCGTCGACCTTGACAAGGAGATTGA
GCATTTGAAGGCGAAAATTGACGCGGGCGCAGATTTCATTGTCACGCAGT
TTTTTTATGACGTGGAGGTGTACCTGGACTACGTGGCTCGGTGCCGTGCC
GCGGGTATTACCTGCCCCATCGTCCCAGGCGTCATGCCCATCCAAAATTA
CACCTTGTTTCGGCGCATGACCTCTTTCTGCCGGACCCGCGTCCCGGCGG
AGATGTGGGAGCAACTGGCACCCatcaaggaggacgaggaagcggtTCGT
CGGTGGGGGGTGAGCTTCTTGACCAAGCTCTGCCGGCGGCTTTTGGACGC
GGATGTCACCCCGAACCTCATCCATTTCTACACCCTGAACCTGGAGAAGT
CCGTCCGCTTGATCCTCGAGTCCCTGGGGCTGACCGCCACGGCCTCGATC
CGCCGGCAGTTCCCCTGGCGGTCCTCCAAGCTGAGCTCtcgcgcggggga
ggacgtgcggCCCATCAATTGGGCGAACCGGCCTAAGTCGTACTTGTCGC
GGACGGAGGAGTGGGACGAATTTCCGAAcgggcggtggggggacGGGCGC
TCGCCGGCCTTCGGGGAGCTCAGCGACTACCAGTTCGTCGACACATCGTT
GGGATCGCGGGAAGACCGACGGGCCATGTGGGGGGAGGCCCCCttgaagg
acgtggaggtctTCGAGGCCTTCATCAAGTACGTCCGAGCCGAGATCCCC
CTGTTGCCGTGGTGCGAAGTGCCCTTGCAGGCGGAGACTGGGACGATCAG
CGCGGACCTGGTCAAGATCAACAAGGCGGGCTTCCTGACCATCAACAGCC
AGCCGGCCGTGAATGGCGCGCTCAGCGACGACGCGGTCTTtggatggggg
ggggcagggggacgGGTGTATCAAAAGGCGTACGTGGAATGCTTCACGTC
GCAAGAGAACTTGAAATTGTTGATGGAGCTCTGTGAGAAAAAACCAAATT
TGCATTACTACGCGGTGGATGTGGCCGGCAACACCTATTCCAATGGTTCC
AAAAAGGCGACAGCTTTGACCTGGGGGGTATTCCCGCAGTGCGAGATCCT
GCAGCCGACGATATTTGACCCAAACACTTTCCTTGTATGGAAGAACGAGG
CCTTCCAATTGTGGACCTCAATCTGGGCGTCTATCTACGACGACGAGTCC
GCCTCAAACGCCCTTATCCACAAAATCCACGATACTTATTTCCTGGTTGC
CATTATCGACAACGACTTCTCGAGTACTGCGTCGATGTGGTCGGTCTTCA
GGGAAATTATagatgagaaagagggaacGCCACTGGGTGGCAGTCAGCAC
CACCCCCAGTACTCCCTACCATAG

Synonyms

Publications