rna1560, rna1560 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1560
Unique Name	rna1560
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1708
Alignment location	CM002457.1:931886..932964 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100007g13.6472.mrna
Orig protein id	gnl\|cribi\|Naga_100007g13.6472
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:931886..932964 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g13	gene1501	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29145.1	cds1556	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1560	rna1560-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:931886..932964-
coding sequence from alignment at CM002457.1:931886..932964-

mRNA sequence

>rna1560 ID=rna1560|Name=rna1560|organism=Nannochloropsis gaditana|type=mRNA|length=1708bp
AATGGCTGAAATAGAGCCAGCAAAGATGCTCTAACTATAGCTTCATATAA
AATTATGAAGTGTCATGCGCGGGGCCGCTGGCTGGGATGATATACTTCAG
CATCGGCGTGCAGATTCACTCGATCTCTCTTGCAGCCCGCCACCTAGCCT
CATGATTACACTCACCAGACTACTCTCCCTCGCCACTTTACCTACCATCA
CTCAGATGTTGGATATGACGACAATATTCGCCATGTTCGGCAACGTGGGC
TCTGTCGTGGGTGTGGTGATCATGAACAAGTACATCGTCGCCGTCGACGC
CTTCAATTTCATGATCTTCCTCTCCTTCACCCACTTCGTCTTCACCTACC
TGGGGTGCTCCGTCCTCCTCCACCTCGGATTCTTCAACTACAAACCGGCC
CCTATCCGCGGCGTCCTCCCCGTAGCCCTGGGCTCCTTGGGCTCTGTCGC
CTTCATGAATTTGAATCTGGCGCATAATTCCGTTGGCTTCTACCAGCTCT
CTAAGCTAGCTTGCATCCCTGTGACGATCGCCCTTGAGCGTGCCTTCTAT
GGCAAAACAGTCCCAGGCCCCGTCCTTGTCACGCTGATTCCCATCACGAT
CGGGGTGGGCATCGCGACCGTGAACGACGTGAGCGTCAACCTAGTGGGTA
CCGCCTTCGCCGCCCTGGCCGTCCTCTTCACCTCCCTGGCCCAAATCTTC
ACATCCACCTACCAGAAGCAGCTGGACTGCGACGCCCTCCAGCTCCTCTA
CCACTCGTCGCCCCTCATCGCGGCCGGCTCCTTCCTCATGATCCCTTTCT
TCGACAACGTCCGCTACCTGGTCCAGACCTCAATCTCCCTCTCCCTCCTC
AACCACGTCCTCTCCTCCTGCGTCCTCGCCCTGGGCGTCAACATCTCCAA
CTACCTAGTGCTAGGCAAGACGTCTCCCCTCACCTACCAGGTGCTGGGGC
ACCTCAAGACCATCCTCATTTTGGTGCTTGGCTTCGTGGTGTTCAAGTAC
AAGTCCAACGCCCGCGCCGTCGTCGGCATCCTGATCGCCTTGGGCGGCGT
CATTGCCTACACCGAGTTGAAGCGCCGGATGTCTCTGCAGCAAGGCGGTA
GGGCTGGAATGAGCAGCAGTCACAGCGGGCTACGGAGGGGCTTTGAGGGC
CTGTCCTACAGTAAGGTGGCGGCCGACGAGGAAATCCCCGACGGCGAGAT
AGGTGGCGCCGGTCGGTTGGAGCTGATGGGCGCGATGAAGGTGTGAGGAG
GATGAGGAAGCGCCGGCGGAGGCTGTAGGGGTCCGTAAAGTACCTGCCGT
GTGGCCCGGGAGGCGGCCCACGGGACCATGGACTCGGAAGGGCGGATGGC
GCGGATGGAGGCTACCGGATGCACCGTGTATTGCGGCCATGGGCCGTGAG
CAAAAAGTATGAAGAAAGGGAAGAATGCCGGAGACCCGGTGGGTGGAGTG
GGGGGCAGAAGGGGCGCGACGCCTCGCGCAGGCCTCGAACAGAGTCTGTA
ATGTACGACGTAATAGCGAATTTAGAGCCCAAGTCGGCAAGTCATGCTAG
CTTGCTTGTAGTGGCTTGTCGTTGAGCGCGCGGCGAAGGATAAGAAACAG
GCGCGAGGAAGAAATTGGTACGAAAAAGCGTAGAAGCACGAGAAACTGAA
CGATCCTTTCCGACGCTTTAACACGCGACAGAAATTATTTTAACGACAAT
GTTTCTCT

protein sequence of rna1560

>rna1560-protein ID=rna1560-protein|Name=rna1560|organism=Nannochloropsis gaditana|type=polypeptide|length=155bp
MAKSARSKSRKHWASERRRTLGVPVETKQLMEQSQRLAANLSKQTSQPSI
MKLKSVFKRPGSNSYAMSVQRRLAISRKRKSGTEGKHKASAVERESEGEM
ETVESAGAVSEDPVEEVDGMEVVPGKRPTGKARIVSRFKKSGQAFSAKKQ
KRVKS

mRNA from alignment at CM002457.1:931886..932964-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1560 ID=rna1560|Name=rna1560|organism=Nannochloropsis gaditana|type=mRNA|length=1079bp|location=Sequence derived from alignment at CM002457.1:931886..932964- (Nannochloropsis gaditana)
TCACGGGTCTCACGAGTCCGTCCAACTAGCAACGTCACTGTTTTCTCGCG
CGCAGAGAGGCAGACCCTCTTTTCGTGAGCAGGCACATTGCAGAGGCTCG
TAACAAAAGCATTACGGCATTACATGCCATCAAACTCCTCCAGATCATGA
ACATTAAGTTGAATGATAGATACATGTTATTTTCATCTATTAACGAGAAT
TTTGTGACGTTCGACCGAACACAATACGCGGTACCGCGTTCAAGGATCTC
CCCGCTACCACTAAACAAAGATACATACGTTTGAAACAGTTTTTGTGTCG
AGCCTTTCACGGCTCTATCTATCCTTCGATCATAGTTATAAAAATGATTT
CATTTTATTATGAGATACATGTCTTTTGACGACTGGGCTCATATTCCTGG
AAACGTATGGCGGGGAAGTGAGTCGGTTCACCTCCTCATCCTTATGCTCC
CTCCTTACATTAAACCCTGCAGTCGAGCATGGCTAAATCTGCTAGGTCTA
AGAGCCGCAAGCACTGGGCATCAGAGCGTAGGCGGACGCTGGGTGTACCC
GTGGAGACTAAACAACTGATGGAGCAGTCCCAGCGCTTGGCGGCAAACCT
ATCGAAACAGACATCACAGCCCTCAATTATGAAACTCAAATCTGTTTTCA
AGCGCCCTGGGAGTAATTCTTATGCCATGTCCGTGCAGCGACGCTTGGCC
ATAAGTCGTAAGCGCAAAAGCGGCACCGAAGGTAAGCACAAGGCGTCCGC
AGTGGAAAGAGAAAGTGAAGGGGAGATGGAGACTGTTGAGAGCGCGGGCG
CCGTGTCTGAGGATCCAGTGGAGGAAGTGGATGGCATGGAGGTGGTACCC
GGAAAAAGGCCCACTGGCAAAGCGCGAATCGTTTCACGCTTCAAGAAATC
GGGACAGGCGTTCAGTGCTAAGAAGCAAAAACGCGTGAAGTCCTGATACA
GGAGATGGAAATGTGTAAAAAAATAAAGGCTTTGCACTGGAGGCTGACCC
TTTGCATTTTAAGTGCGTCTGTAACGAAAGGAAAAGCAAAAGATCACTAC
CTGGGTAGTAGTCAAGAGAAACATTGTCG

Coding sequence (CDS) from alignment at CM002457.1:931886..932964-

>rna1560 ID=rna1560|Name=rna1560|organism=Nannochloropsis gaditana|type=CDS|length=468bp|location=Sequence derived from alignment at CM002457.1:931886..932964- (Nannochloropsis gaditana)
ATGGCTAAATCTGCTAGGTCTAAGAGCCGCAAGCACTGGGCATCAGAGCG
TAGGCGGACGCTGGGTGTACCCGTGGAGACTAAACAACTGATGGAGCAGT
CCCAGCGCTTGGCGGCAAACCTATCGAAACAGACATCACAGCCCTCAATT
ATGAAACTCAAATCTGTTTTCAAGCGCCCTGGGAGTAATTCTTATGCCAT
GTCCGTGCAGCGACGCTTGGCCATAAGTCGTAAGCGCAAAAGCGGCACCG
AAGGTAAGCACAAGGCGTCCGCAGTGGAAAGAGAAAGTGAAGGGGAGATG
GAGACTGTTGAGAGCGCGGGCGCCGTGTCTGAGGATCCAGTGGAGGAAGT
GGATGGCATGGAGGTGGTACCCGGAAAAAGGCCCACTGGCAAAGCGCGAA
TCGTTTCACGCTTCAAGAAATCGGGACAGGCGTTCAGTGCTAAGAAGCAA
AAACGCGTGAAGTCCTGA

Synonyms

Publications