rna156, rna156 (mRNA) Nannochloropsis gaditana

Overview
Namerna156
Unique Namerna156
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2016
Alignment locationCM002455.1:404715..405332 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100013g64.9774.mrna
Orig protein idgnl|cribi|Naga_100013g64.9774
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:404715..405332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g64gene148Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30486.1cds156Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna156rna156-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna156 ID=rna156|Name=rna156|organism=Nannochloropsis gaditana|type=mRNA|length=2016bp
CCTCCCTGCACCCATGGCCCCGCTCTCCTCGCCCCTAAAATTCACACCAC
CCACGCAATAAATGTAGCACGGAATTCCATTCGCACCCCACAATCTTGTA
TCTGTTTCGTACGTCATTGGCGGTAGCCCCTAGGTATTCGCTCGCCATTT
ATTTCGTGAAAAAGGCTCTCGCGCGGTCCCCGACGACCTCTTCGTCATCA
GCCACCTTTCCACCATGCCGCATCTACCGGAAGACAAGCTACGCACACAG
AAAGCATTCCAATTCCTGACTTTCAACAGAAGTCAAAGACGCTCTTCTTC
TTTCATGCTTTTCAGTCTTTGCTTGTTGATCTTTATTCTGCGTGGGCACG
GAGCGGAGGACTACTACAAAACCCTGGGCGTAAAACGGTCTGCTTCACAA
TCGGAAATAAAAAAGGCTTGGCGCAAGTTATCACTAGATCTGCACCCCGA
CAAAAACAACAGCCCTGACGCCCAAGAAAAGTTTGCCACTGCCTCGAATG
CATACACGATCCTCTCCAACGAGGAACGCCGGGAGGTGTACGACAGGGAG
GGAGAAGAAGGGTTGAAGCGTATGGAGGCGCGGGAGGCCCAAGGGAACAT
GGACCCCTTCGGCGGCGGAATCTTCGAGGCCTTCGGCTTTGGGGGCTTTG
GAGGTGGCGGCCGTCGACGGGACGAGGAGGCGAAGACGCCGAACGTGGTG
ATACCCCTCCGCGTCTCGCTCAAGCAGCTCTTCACCGGGGATTTGCTGGA
GGTCACCTACATTCGGCAAGTCCTGTGCATGAACCACAAGGACTGCACGA
AGCCCGCGCCCGAATGCCAAGGCCCTGGCATCCGCCTGCGGCAGCAGCAA
CTGGCCCCGGGCTTCATCCAGCAGGTGCAAGTACGGGACGAGACCTGCGT
GGCCCGTGGCAAAGCTTGGAGGAAGGGTTGCTCGGCTTGCCCGAACGGGC
AGACGCAGCCGGAAGAGGTGAAGCTGACGGTGGACATCCAGCCGGGGATG
AAAGACGGGGAGATGATTACCTTCTCCGACGTGGCGGACGAGAAGGTCGG
GCACAGTGCGGGGGACCTGGTGGTGCACGTCCAGGCCATCCCCCACGAGT
TCTACACGCGGCACGGGGACGACCTCCGGGTATCCTTGAAGGTGGGCCTC
TTGGACGCGCTTGTGGGCTTTGAGACGACCGTGAAGCAGGTGGACGGCAG
GGACGTCAAGTTAAACAAACCGACCGTAACCTCTCACGGCGAGGTGCAGC
GTGTCAAGGGACAGGGCATGCCTAAGTCAGGCGGATCGGGCCTGGGCGAC
CTGCTTATCACCTGGGAAGTGACATTCCCGGAGGCGTTGACGGACGAGCA
AAAAGCTCTGTTGAAAAAGGCTTTGGCTTAAGCTGAACTTCTGGTGGGGG
CAAAAAGGGGGCATCTGAGGGTCCTGGGGCTGGAGCTTGTGCAGCTGTAC
GAGTTGATTGCAAGAGTTGGGTAAATTACAGCCGTGACAGAACTTTCAGG
AAGGTCCAATAGGTAGGAACGGAATGGATGCGACGGAGATACCTCACACT
GGGTATTGCCGAGAAAATAGGAAGGGATCAGAGGGGATAAGTCTCACATG
CAACGATGCGGCAAAAACAGCTTCGTGGAACATGTACGGTATGGTGGGAT
GTTAAGAGGTGAGAAACTCTGTAGACTGTAGACCGCGTTTTGTAAGCCGA
ACAACCCGGCGGGGGGGGGTTATTTTGTCGAGGATAGATGGCAAAATGCG
AAATGGAAACGACGAGTGAGAAAAGTAGGAAAGCATACGATAGCACGGTC
AGCATCGCTAGCCATAATAGGATGACTTAAAAAGCTATGGAGCCAACAAT
CAATAATGGTACAGGTTCATGTGACTGTTTCCTGTTGCATTCTAGAGACT
GCGGGATGGAGACTTTCTTTGACCTGTCCCCGAAAAAAAGGAAGAGGACT
GTAAGATCTTGTGAGTTACTGCCCACGTCGATAATCCTCCTCGCAGATGC
ATTTTTTTAACTTTCT
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protein sequence of rna156

>rna156-protein ID=rna156-protein|Name=rna156|organism=Nannochloropsis gaditana|type=polypeptide|length=205bp
MLRGAYHHHRALPRNPSPRGRDSPSSSLPGGPRRGGGRHALSEYPVVRAQ
PPCQQIAVEDAEGGKGEQGNTGHDRVDDEDCLVRDCPAQGTLDHGGYFFG
GVEPVGEEKDADQALERKLEGAGQREEEEEKVVPVAEGGGGSKSVDQKGE
RSTQSPLTHMHPRRFPLPSMQAYRAPMQVLSHRQWWSSPGTDFRQEAQYR
ECACV
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mRNA from alignment at CM002455.1:404715..405332-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna156 ID=rna156|Name=rna156|organism=Nannochloropsis gaditana|type=mRNA|length=618bp|location=Sequence derived from alignment at CM002455.1:404715..405332- (Nannochloropsis gaditana)
ATGCTCCGTGGAGCCTACCACCACCACAGAGCCCTGCCTCGCAACCCTTC
CCCCCGGGGCCGGGACAGTCCGTCTTCCTCGCTCCCAGGAGGTCCCCGAC
GAGGCGGAGGAAGGCACGCGCTGTCGGAGTATCCAGTCGTACGTGCCCAG
CCCCCTTGTCAACAGATAGCCGTGGAAGACGCAGAGGGAGGCAAAGGAGA
GCAGGGCAATACCGGACATGACCGTGTGGATGATGAGGATTGCCTGGTAC
GTGACTGCCCGGCCCAAGGTACGTTGGACCATGGCGGGTACTTCTTCGGT
GGTGTTGAGCCAGTGGGTGAGGAGAAGGATGCTGATCAGGCTCTGGAGCG
CAAACTGGAGGGTGCCGGCCAAAGAGAGGAGGAAGAAGAAAAAGTAGTTC
CTGTGGCGGAAGGGGGAGGCGGGTCGAAAAGTGTAGATCAGAAAGGCGAA
CGAAGCACCCAGTCCCCGCTCACCCACATGCATCCCCGGCGCTTTCCTCT
GCCCTCAATGCAGGCGTACCGTGCACCGATGCAGGTGTTAAGCCATAGGC
AGTGGTGGTCGAGTCCGGGAACCGATTTTCGGCAGGAAGCACAGTACCGG
GAGTGCGCTTGTGTGTAA
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Coding sequence (CDS) from alignment at CM002455.1:404715..405332-

>rna156 ID=rna156|Name=rna156|organism=Nannochloropsis gaditana|type=CDS|length=618bp|location=Sequence derived from alignment at CM002455.1:404715..405332- (Nannochloropsis gaditana)
ATGCTCCGTGGAGCCTACCACCACCACAGAGCCCTGCCTCGCAACCCTTC
CCCCCGGGGCCGGGACAGTCCGTCTTCCTCGCTCCCAGGAGGTCCCCGAC
GAGGCGGAGGAAGGCACGCGCTGTCGGAGTATCCAGTCGTACGTGCCCAG
CCCCCTTGTCAACAGATAGCCGTGGAAGACGCAGAGGGAGGCAAAGGAGA
GCAGGGCAATACCGGACATGACCGTGTGGATGATGAGGATTGCCTGGTAC
GTGACTGCCCGGCCCAAGGTACGTTGGACCATGGCGGGTACTTCTTCGGT
GGTGTTGAGCCAGTGGGTGAGGAGAAGGATGCTGATCAGGCTCTGGAGCG
CAAACTGGAGGGTGCCGGCCAAAGAGAGGAGGAAGAAGAAAAAGTAGTTC
CTGTGGCGGAAGGGGGAGGCGGGTCGAAAAGTGTAGATCAGAAAGGCGAA
CGAAGCACCCAGTCCCCGCTCACCCACATGCATCCCCGGCGCTTTCCTCT
GCCCTCAATGCAGGCGTACCGTGCACCGATGCAGGTGTTAAGCCATAGGC
AGTGGTGGTCGAGTCCGGGAACCGATTTTCGGCAGGAAGCACAGTACCGG
GAGTGCGCTTGTGTGTAA
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Synonyms
Publications