|
|
Properties
| Property Name | Value |
|---|
| Product | protein kinase c binding protein |
| Orig transcript id | gnl|cribi|Naga_100007g18.6532.mrna |
| Orig protein id | gnl|cribi|Naga_100007g18.6532 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:923602..925414 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1554 ID=rna1554|Name=rna1554|organism=Nannochloropsis gaditana|type=mRNA|length=243bp
ATGATATCTCATCGAGCATGGAAAAAATTGAGCGCTGGCTTGCCGTTGCT
CGTCTTTTTGACAGGTGGTTCTCTCTTCTTGGCCAAGTTTGTACAGGGTC
GGGTGGAGGCCAAAGATAGCAAGCTGCAAAGTCGTAGTGAAAGGGAGTTC
AGTATTGAGGAGGAACACAAACGAATGATGGCCAAACTAGATCCAGAGAA
CGCCTACAAGGTGGTTCGTATCCATCGGCCAGAGGATGACTGA back to topprotein sequence of rna1554 >rna1554-protein ID=rna1554-protein|Name=rna1554|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MSQRLVRLSQHLLVHRTSLHATSIAVRLSRTTRRCLVTGNQANTMADEVA
ESRKAAAKKMEEAADAGEPTVFDKIVKKEIPSNFIYEDDDCVAFHDLSPQ
GPVHFLVIPKDRAGLSRLSKAEESHKALLGHLLYVAQQVAKQEGLVPGGF
RVVINDGPDGSQSVYHLHIHVIGGRQNMCTPASHLHRWDGRLDDLQLIFS
ACPDLHCRYLGCLRTLE back to topmRNA from alignment at CM002457.1:923602..925414+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1554 ID=rna1554|Name=rna1554|organism=Nannochloropsis gaditana|type=mRNA|length=1813bp|location=Sequence derived from alignment at CM002457.1:923602..925414+ (Nannochloropsis gaditana)
TGTACAGAGATAACGTGACATTGTTGGTGGGAACgtgtgaggagggaggt
tatCCGAGGGGAGGTCGAGATAAGCCATAAGATAACAAGCAGAGTCAGCT
CATAAGTCTTGAACTCTGATCATGTTATGAACGTGACTGGCCGTCCATAT
GTATCGTCCAAGCTCTCTTATGCAATACTTTGGCATAAACTACGTCGCGG
CGCGGCGTCAGCACTTGTAGCACTACTGATTATTACCTGGTACCTCAGTG
AAAGCAGCTCTCAGCAGGCGATGGAGAAGTAATTATGGGGAATTCACCAG
CAAAACATAAGACTTGACACCCACGTACACACGCACAGAGATATTGTCCA
CGTGGTCTGCATCATTTGCGTTCCGTGTGGCGTGCAGTGAGCTCACGGCC
TTGCCTGCTCTATGAGCCAACGTCTTGTCCGCCTCTCTCAACACTTGCTG
GTACATCGTACGTCCTTGCACGCAACTTCCATCGCAGTCAGATTATCTCG
CACGACTAGACGGTGTCTTGTCACCGGTAACCAGGCAAATACCATGGCTG
ATGAGGTAGCCGAGTCCAGGAAAGCGGCAGCcaaaaagatggaggaggca
gcggatGCGGGCGAGGTAGGTGGTAGAGAGCTCGTAAGAACAAGGTCATG
GTTTTTAAAAGTCGCATGGGGCATTTGTGCTTTCGTCGTACGATGCGGTT
GACGTCAAGTGCTCAGAAATTTTAAAAACTTATCTCTTGGACGGAGAACC
ATCACGATCGTGTCGTGACGAACGTATGCGTGCAGCACATTTTATATTGT
TTCTCCAACATGACAACGTATGGCAACATCTCCGGAAGTCGTTATTCTAT
TTCACTGACTACCCGGCTTCTGCCTTTTCGATTTCGTTTTTACAGCCGAC
AGTCTTCGACAAGATCGTAAAGAAAGAAATCCCCTCAAACTTCATCTACG
AAGACGACGACTGCGTAGCCTTTCATGACTTGAGTCCGCAAGGGCCCGTT
CATTTCTTGGTTATCCCCAAGGACAGGGCCGGTTTGTCTCGCCTAAGCAA
AGCGGAAGAGAGCCACAAGGCCTTGCTAGGCCATTTGTTGTACGTTGCGC
AGCAGGTTGCGAAACAGGAAGGTTTAGTCCCAGGTGGTTTCCGAGTGGTC
ATCAATGACGGTCCCGACGGGAGTCAGTCTGTTTATCATTTGCATATCCA
CGTTATTGGTGGGCGACAGGTGGGTActtttcattttcctcctgaaTTAA
TAGAGAGTAATGAATATGTTTACGTTACGCGCTTACAGAATATGTGTACT
CCCGCCTCACACTTGCACAGATGGGATGGCCGCCTGGATGATCTACAGCT
CATATTTTCTGCGTGTCCAGATCTGCATTGTCGTTATTTGGGGTGTCTTC
GTACTCTGGAATGATGAGGTGTATGAGCTATATCATGCTGTGTTGAGTAA
CGGGTGAAGGGTTTTGGGTAAAGAGGTTTCGAAGCTTACATGATTGGCAA
AAATCTAAAGAAGATTAAAAAGTTGTGCAAATTCAGCAAAGCTTGTGCTG
TTCATTTATACAATTGTATCGTAGCCAACACGTGTGGGTCTCGGTGCGAT
ATTCGAGCTCGCCTCCCGTCATGAGTATGCCCAACGGCCCATTCAAAAAG
ACGTTGAGCGCGGCTGCTTCCTCACCAGCAGCCGGGTGCGACAGTGTAAT
TGTCCAAAGCAAACTTCATTGGCAGTGCGTAGCTTGGAGATACAAATCCT
TTTCCTGTGTGTATTTAGCATCACGATTCCCTTCTCTGATCGTCCCTTTT
TGAAGTACACTGC back to topCoding sequence (CDS) from alignment at CM002457.1:923602..925414+ >rna1554 ID=rna1554|Name=rna1554|organism=Nannochloropsis gaditana|type=CDS|length=1962bp|location=Sequence derived from alignment at CM002457.1:923602..925414+ (Nannochloropsis gaditana)
ATGAGCCAACGTCTTGTCCGCCTCTCTCAACACTTGCTGGTACATCGTAC
GTCCTTGCACGCAACTTCCATCGCAGTCAGATTATCTCGCACGACTAGAC
GGTGTCTTGTCACCGGTAACCAGGCAAATACCATGGCTGATGAGGTAGCC
GAGTCCAGGAAAGCGGCAGCcaaaaagatggaggaggcagcggatGCGGG
CGAGCCGACAGTCTTCGACAAGATCGTAAAGAAAGAAATCCCCTCAAACT
TCATCTACGAAGACGACGACTGCGTAGCCTTTCATGACTTGAGTCCGCAA
GGGCCCGTTCATTTCTTGGTTATCCCCAAGGACAGGGCCGGTTTGTCTCG
CCTAAGCAAAGCGGAAGAGAGCCACAAGGCCTTGCTAGGCCATTTGTTGT
ACGTTGCGCAGCAGGTTGCGAAACAGGAAGGTTTAGTCCCAGGTGGTTTC
CGAGTGGTCATCAATGACGGTCCCGACGGGAGTCAGTCTGTTTATCATTT
GCATATCCACGTTATTGGTGGGCGACAGAATATGTGTACTCCCGCCTCAC
ACTTGCACAGATGGGATGGCCGCCTGGATGATCTACAGCTCATATTTTCT
GCGTGTCCAGATCTGCATTGTCGTTATTTGGGGTGTCTTCGTACTCTGGA
ATGAATGAGCCAACGTCTTGTCCGCCTCTCTCAACACTTGCTGGTACATC
GTACGTCCTTGCACGCAACTTCCATCGCAGTCAGATTATCTCGCACGACT
AGACGGTGTCTTGTCACCGGTAACCAGGCAAATACCATGGCTGATGAGGT
AGCCGAGTCCAGGAAAGCGGCAGCcaaaaagatggaggaggcagcggatG
CGGGCGAGCCGACAGTCTTCGACAAGATCGTAAAGAAAGAAATCCCCTCA
AACTTCATCTACGAAGACGACGACTGCGTAGCCTTTCATGACTTGAGTCC
GCAAGGGCCCGTTCATTTCTTGGTTATCCCCAAGGACAGGGCCGGTTTGT
CTCGCCTAAGCAAAGCGGAAGAGAGCCACAAGGCCTTGCTAGGCCATTTG
TTGTACGTTGCGCAGCAGGTTGCGAAACAGGAAGGTTTAGTCCCAGGTGG
TTTCCGAGTGGTCATCAATGACGGTCCCGACGGGAGTCAGTCTGTTTATC
ATTTGCATATCCACGTTATTGGTGGGCGACAGAATATGTGTACTCCCGCC
TCACACTTGCACAGATGGGATGGCCGCCTGGATGATCTACAGCTCATATT
TTCTGCGTGTCCAGATCTGCATTGTCGTTATTTGGGGTGTCTTCGTACTC
TGGAATGAATGAGCCAACGTCTTGTCCGCCTCTCTCAACACTTGCTGGTA
CATCGTACGTCCTTGCACGCAACTTCCATCGCAGTCAGATTATCTCGCAC
GACTAGACGGTGTCTTGTCACCGGTAACCAGGCAAATACCATGGCTGATG
AGGTAGCCGAGTCCAGGAAAGCGGCAGCcaaaaagatggaggaggcagcg
gatGCGGGCGAGCCGACAGTCTTCGACAAGATCGTAAAGAAAGAAATCCC
CTCAAACTTCATCTACGAAGACGACGACTGCGTAGCCTTTCATGACTTGA
GTCCGCAAGGGCCCGTTCATTTCTTGGTTATCCCCAAGGACAGGGCCGGT
TTGTCTCGCCTAAGCAAAGCGGAAGAGAGCCACAAGGCCTTGCTAGGCCA
TTTGTTGTACGTTGCGCAGCAGGTTGCGAAACAGGAAGGTTTAGTCCCAG
GTGGTTTCCGAGTGGTCATCAATGACGGTCCCGACGGGAGTCAGTCTGTT
TATCATTTGCATATCCACGTTATTGGTGGGCGACAGAATATGTGTACTCC
CGCCTCACACTTGCACAGATGGGATGGCCGCCTGGATGATCTACAGCTCA
TATTTTCTGCGTGTCCAGATCTGCATTGTCGTTATTTGGGGTGTCTTCGT
ACTCTGGAATGA back to top
|