rna1551, rna1551 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1551
Unique Name	rna1551
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	219
Alignment location	CM002457.1:916233..918617 -

Link to JBrowse

Properties


Property Name	Value
Product	phosphate metabolism protein 7
Orig transcript id	gnl\|cribi\|Naga_100007g21.6476.mrna
Orig protein id	gnl\|cribi\|Naga_100007g21.6476
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:916233..918617 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g21	gene1494	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29149.1	cds1547	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1551	rna1551-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:916233..918617-
coding sequence from alignment at CM002457.1:916233..918617-

mRNA sequence

>rna1551 ID=rna1551|Name=rna1551|organism=Nannochloropsis gaditana|type=mRNA|length=219bp
ATGCATTTGGCAAGAGAGTGGGACGAAGCATTCACAGAATCTGACTCCGC
CAGGATGGGACTTAGGCGTAGTCTCCTGCATGGGCGATGGATCGCAAAGG
GATTACAAAATCAATATAAGGCGAGGTCGTCAATGGAAGCCAAACACGGG
ATCTATCAGGAAAGGTGTAGTTTTTCCCTTCAAACTGAATACAAATTTCC
GTTGAGTAAACCGAAATAA

protein sequence of rna1551

>rna1551-protein ID=rna1551-protein|Name=rna1551|organism=Nannochloropsis gaditana|type=polypeptide|length=794bp
MDLEAPPSELEIPSASQFLAAFYPAIATAIICLVAFPLLRPHSPDVYDAK
RERVRLGGSTHQRGDLANIPPELPKFTVDWLRLLASFSDDDILRFVGADG
LMFIRYLRVCFQASCLMLVYGLCVLVPINASGTNKATQFERFSASNVADG
SQTLWAHFAGAYLFSFLLMYLLYREYQRYVELRQQYMKSPTVQSYSIVIR
DIPKDVDQDTVERYLTSLLGDESIAIHLVEDPRPYDKLIEEKDRALFGLE
SARAKMARNPTARPMHKVGFMGLWGEKVDSLGHYEKEVAEVNGRIKELRS
KEQGFAHAAIVTFETIRVATAFQNIPMQQQVRFMKVLPAPARTDLLWGNL
GEPAVARWVRSLLVAGVVFFVIFCYIIPITFVASLANLNALARTKGLGWL
QPVADYNPDFTAFLQGFVPPLITSIFFSMVPTLMAFLARQESLPAESDVQ
STAIWYVFLFVLFDYFLVYTIAGSVAAKMDLLKHYAESPAEIVNLFATSL
PAQSTFFMNLIMLAALSMQPIELLRVGPLFVTKLKRRFLASSIYDHLRAM
TDDVYFHELYAFPMLVFLVMCAYASLAPFLMVFVLAYYGISYVVSLNQLL
YIYNVPFHTGAKQFPTVFRCSMVAIVISQLLMIGVLGLKRMAIPSTLMIP
LVAFTVWWGYEMSHQFRFVGNTLTLENLLATDSADMPTDTREALKQAYQL
HQDAGEGMELSHKALQPLTEPFAITRDGLLDSLVEGSDDVELGEEAKEEG
MPRPLGRERKGEEGTGAEKGLLEKLTARGSQILNMAKRESNGGK

mRNA from alignment at CM002457.1:916233..918617-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1551 ID=rna1551|Name=rna1551|organism=Nannochloropsis gaditana|type=mRNA|length=2385bp|location=Sequence derived from alignment at CM002457.1:916233..918617- (Nannochloropsis gaditana)
ATGGATCTCGAGGCGCCTCCAAGCGAGCTCGAAATCCCTTCCGCGTCGCA
ATTTTTGGCGGCCTTCTACCCCGCCATCGCGACTGCAATTATATGCTTGG
TTGCTTTCCCATTACTGCGACCGCATTCCCCGGATGTTTACGACGCCAAA
CGGGAGCGCGTGCGTCTAGGTGGCTCCACGCACCAACGCGGAGACTTGGC
AAATATACCTCCCGAGCTGCCCAAATTTACCGTGGACTGGCTTCGGCTCT
TGGCTTCTTTTTCCGACGACGACATACTTCGCTTCGTGGGCGCGGACGGC
CTGATGTTTATCCGCTATCTGCGCGTATGCTTTCAAGCCTCCTGCCTCAT
GCTCGTGTACGGACTCTGCGTCCTCGTTCCTATCAACGCCTCTGGCACGA
ACAAAGCGACGCAGTTCGAGAGATTTTCAGCTTCTAATGTCGCAGACGGA
TCCCAAACACTGTGGGCTCACTTCGCGGGAGCCTATCTGTTCTCTTTCCT
CCTTATGTACCTTCTTTACCGGGAGTACCAGAGATACGTTGAACTGCGAC
AGCAGTACATGAAGTCCCCCACTGTGCAGTCCTACTCGATCGTGATCCGT
GACATTCCCAAGGACGTGGACCAAGACACGGTGGAGCGGTATCTGACAAG
CCTCCTTGGGGACGAGTCCATCGCGATCCACTTGGTGGAGGACCCCCGTC
CCTACGACAAGCTGATCGAGGAGAAGGACCGCGCGCTCTTCGGCCTGGAA
AGCGCGCGGGCCAAAATGGCGCGAAACCCAACAGCGCGGCCCATGCACAA
AGTGGGGTTTATGGGCTTGTGGGGGGAGAAGGTGGATAGCCTGGGGCACT
ACGAAAAGGAGGTAGCGGAGGTGAACGGGCGAATCAAGGAGCTGCGAAGC
AAGGAGCAGGGCTTCGCACACGCGGCCATCGTCACCTTCGAGACGATCCG
GGTAGCCACTGCCTTTCAGAACATACCCATGCAGCAGCAGGTGCGGTTCA
TGAAGGTCTTGCCCGCGCCCGCCCGCACGGACCTGCTTTGGGGGAACCTC
GGGGAGCCGGCCGTGGCCCGCTGGGTCCGAAGCCTCCTGGTGGCCGGCGT
CGTCTTCTTCGTGATCTTCTGCTACATCATCCCCATCACTTTCGTGGCCT
CCCTGGCGAACCTGAACGCGCTGGCTCGGACCAAGGGCCTGGGCTGGTTG
CAGCCTGTGGCCGACTACAACCCCGACTTCACCGCCTTTCTGCAGGGTTT
CGTGCCCCCCCTCATCACCTCCATCTTCTTCTCGATGGTCCCCACCCTGA
TGGCCTTTCTGGCGCGGCAGGAGAGCCTGCCTGCGGAGTCGGACGTGCAG
AGTACGGCTATCTGGTACGTATTCCTCTTCGTCCTCTTCGACTACTTCTT
AGTCTACACCATCGCAGGGTCCGTGGCCGCCAAGATGGACCTGCTCAAGC
ACTACGCCGAGTCCCCCGCCGAGATCGTCAACCTCTTCGCCACCTCCCTC
CCCGCTCAGTCCACCTTCTTCATGAATCTCATCATGCTTGCGGCCCTCTC
CATGCAGCCCATCGAGCTCCTGCGCGTAGGCCCCCTCTTTGTCACCAAAC
TCAAACGCCGCTTCCTCGCCTCCTCCATCTACGACCACCTGCGGGCCATG
ACCGACGACGTCTACTTCCACGAGCTCTACGCCTTCCCGATGCTCGTCTT
CCTCGTCATGTGCGCCTACGCCTCCCTGGCCCCCTTCCTCATGGTCTTCG
TCCTCGCCTACTACGGGATCAGCTACGTGGTCAGCCTGAACCAGCTCCTT
TACATCTACAACGTCCCCTTCCACACGGGCGCCAAGCAATTCCCGACCGT
CTTCCGCTGCTCCATGGTGGCCATCGTCATCTCCCAGCTCCTCATGATAG
GCGTGCTGGGCCTGAAGCGCATGGCCATCCCCTCCACCCTCATGATCCCC
CTGGTCGCCTTCACGGTCTGGTGGGGCTACGAAATGTCGCACCAGTTCCG
CTTCGTCGGCAACACGCTCACCCTCGAGAACCTCCTTGCCACGGATTCCG
CGGACATGCCGACCGACACCCGCGAGGCCCTCAAGCAGGCGTACCAGCTG
CACCAGGACGCGGGGGAGGGCATGGAGCTTTCGCACAAGGCCCTGCAGCC
TCTGACGGAGCCCTTCGCCATCACGCGCGACGGGCTGCTGGACAGCTTGG
TGGAGGGGTCGGACGATGTGGAGCTGGGGGAGGAGGCGAAGGAGGAAGGG
ATGCCGCGGCCCTTGGGGAGGGAAAGAAAGGGTGAAGAGGGAACGGGGGC
CGAGAAGGGACTGCTGGAGAAGCTGACAGCGAGGGGCAGCCAAATTTTGA
ACATGGCAAAACGCGAGAGTAACGGCGGGAAGTAA

Coding sequence (CDS) from alignment at CM002457.1:916233..918617-

>rna1551 ID=rna1551|Name=rna1551|organism=Nannochloropsis gaditana|type=CDS|length=2385bp|location=Sequence derived from alignment at CM002457.1:916233..918617- (Nannochloropsis gaditana)
ATGGATCTCGAGGCGCCTCCAAGCGAGCTCGAAATCCCTTCCGCGTCGCA
ATTTTTGGCGGCCTTCTACCCCGCCATCGCGACTGCAATTATATGCTTGG
TTGCTTTCCCATTACTGCGACCGCATTCCCCGGATGTTTACGACGCCAAA
CGGGAGCGCGTGCGTCTAGGTGGCTCCACGCACCAACGCGGAGACTTGGC
AAATATACCTCCCGAGCTGCCCAAATTTACCGTGGACTGGCTTCGGCTCT
TGGCTTCTTTTTCCGACGACGACATACTTCGCTTCGTGGGCGCGGACGGC
CTGATGTTTATCCGCTATCTGCGCGTATGCTTTCAAGCCTCCTGCCTCAT
GCTCGTGTACGGACTCTGCGTCCTCGTTCCTATCAACGCCTCTGGCACGA
ACAAAGCGACGCAGTTCGAGAGATTTTCAGCTTCTAATGTCGCAGACGGA
TCCCAAACACTGTGGGCTCACTTCGCGGGAGCCTATCTGTTCTCTTTCCT
CCTTATGTACCTTCTTTACCGGGAGTACCAGAGATACGTTGAACTGCGAC
AGCAGTACATGAAGTCCCCCACTGTGCAGTCCTACTCGATCGTGATCCGT
GACATTCCCAAGGACGTGGACCAAGACACGGTGGAGCGGTATCTGACAAG
CCTCCTTGGGGACGAGTCCATCGCGATCCACTTGGTGGAGGACCCCCGTC
CCTACGACAAGCTGATCGAGGAGAAGGACCGCGCGCTCTTCGGCCTGGAA
AGCGCGCGGGCCAAAATGGCGCGAAACCCAACAGCGCGGCCCATGCACAA
AGTGGGGTTTATGGGCTTGTGGGGGGAGAAGGTGGATAGCCTGGGGCACT
ACGAAAAGGAGGTAGCGGAGGTGAACGGGCGAATCAAGGAGCTGCGAAGC
AAGGAGCAGGGCTTCGCACACGCGGCCATCGTCACCTTCGAGACGATCCG
GGTAGCCACTGCCTTTCAGAACATACCCATGCAGCAGCAGGTGCGGTTCA
TGAAGGTCTTGCCCGCGCCCGCCCGCACGGACCTGCTTTGGGGGAACCTC
GGGGAGCCGGCCGTGGCCCGCTGGGTCCGAAGCCTCCTGGTGGCCGGCGT
CGTCTTCTTCGTGATCTTCTGCTACATCATCCCCATCACTTTCGTGGCCT
CCCTGGCGAACCTGAACGCGCTGGCTCGGACCAAGGGCCTGGGCTGGTTG
CAGCCTGTGGCCGACTACAACCCCGACTTCACCGCCTTTCTGCAGGGTTT
CGTGCCCCCCCTCATCACCTCCATCTTCTTCTCGATGGTCCCCACCCTGA
TGGCCTTTCTGGCGCGGCAGGAGAGCCTGCCTGCGGAGTCGGACGTGCAG
AGTACGGCTATCTGGTACGTATTCCTCTTCGTCCTCTTCGACTACTTCTT
AGTCTACACCATCGCAGGGTCCGTGGCCGCCAAGATGGACCTGCTCAAGC
ACTACGCCGAGTCCCCCGCCGAGATCGTCAACCTCTTCGCCACCTCCCTC
CCCGCTCAGTCCACCTTCTTCATGAATCTCATCATGCTTGCGGCCCTCTC
CATGCAGCCCATCGAGCTCCTGCGCGTAGGCCCCCTCTTTGTCACCAAAC
TCAAACGCCGCTTCCTCGCCTCCTCCATCTACGACCACCTGCGGGCCATG
ACCGACGACGTCTACTTCCACGAGCTCTACGCCTTCCCGATGCTCGTCTT
CCTCGTCATGTGCGCCTACGCCTCCCTGGCCCCCTTCCTCATGGTCTTCG
TCCTCGCCTACTACGGGATCAGCTACGTGGTCAGCCTGAACCAGCTCCTT
TACATCTACAACGTCCCCTTCCACACGGGCGCCAAGCAATTCCCGACCGT
CTTCCGCTGCTCCATGGTGGCCATCGTCATCTCCCAGCTCCTCATGATAG
GCGTGCTGGGCCTGAAGCGCATGGCCATCCCCTCCACCCTCATGATCCCC
CTGGTCGCCTTCACGGTCTGGTGGGGCTACGAAATGTCGCACCAGTTCCG
CTTCGTCGGCAACACGCTCACCCTCGAGAACCTCCTTGCCACGGATTCCG
CGGACATGCCGACCGACACCCGCGAGGCCCTCAAGCAGGCGTACCAGCTG
CACCAGGACGCGGGGGAGGGCATGGAGCTTTCGCACAAGGCCCTGCAGCC
TCTGACGGAGCCCTTCGCCATCACGCGCGACGGGCTGCTGGACAGCTTGG
TGGAGGGGTCGGACGATGTGGAGCTGGGGGAGGAGGCGAAGGAGGAAGGG
ATGCCGCGGCCCTTGGGGAGGGAAAGAAAGGGTGAAGAGGGAACGGGGGC
CGAGAAGGGACTGCTGGAGAAGCTGACAGCGAGGGGCAGCCAAATTTTGA
ACATGGCAAAACGCGAGAGTAACGGCGGGAAGTAA

Synonyms

Publications