rna155, rna155 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna155
Unique Name	rna155
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1926
Alignment location	CM002455.1:401276..403725 +

Link to JBrowse

Properties


Property Name	Value
Product	dnaj domain protein
Orig transcript id	gnl\|cribi\|Naga_100013g66.9783.mrna
Orig protein id	gnl\|cribi\|Naga_100013g66.9783
Gene	Hsp
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:401276..403725 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Hsp	gene147	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna155	rna155-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30495.1	cds155	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:401276..403725+
coding sequence from alignment at CM002455.1:401276..403725+

mRNA sequence

>rna155 ID=rna155|Name=rna155|organism=Nannochloropsis gaditana|type=mRNA|length=1926bp
ATGGCATTTCCGCGTCTCTTAAGTGTACGTGAAGTGAACGCTGTGCTATT
CTACCAATCACATTGCTGTACGATGGCCCACTCCATGGATAGCGTCACAG
AGCGCCGCTTGCGAGAGTTGGCAGGCAACAAGGTTTGCGCGGACTGCCCT
GCTCCCAACCCTCAGTGGGCGAGCGTCTCGTATGGCTCCTTCATTTGCCT
AGACTGCTCGGGGCAACATCGTGCTCTGGGAGTGCATCTCTCTTTCGTCC
GTTCGATCACCATGGACAGTTGGACTGACAAACAGATAAAGCTTATGGAA
AAGGGGGGAAACGACCAGGTCATAAGTTTCTTCCAGCAGCGGGGAATTGC
TAAAAGTGTTCCGATCCAGCAGAAATATAAGACGGCTGAAGCGGAATTGT
ATCGAGAGCGGATAAAGGCGGTGGTAGAAGGAAGAGAGCCGCCGACCGAG
CTGCCTGCTGGCGCGCGAGCTCTTTCAGCCAGTGGCTTGGGACAAGGGCC
CGCTACTAGCAGCGGAGGGGGTCAGGGAGTGTCAGCATTGGAGCCGTTGC
CAGGCGAGACTCAAGATCAGTACGTGGCGCGTCAGCGACAATTGAACGAT
GAGGCGCGACACAGAATGCAAGCGAAATTCGGACCCGGTGGATTCCAAGG
AGGGGGGGGGGGTCGAATGCAGGGTTTTGGGAGCGATCCCGATTACGATC
CCTCCCGCGGGAGGTTTGGAGGTGGGAAGGGACAGGAGTTGGGGAATGAG
ATCATCGGGGCGGTGGGGAAATGGGGGTCGACCGTGCAGGCCCAGCTACA
GGAGGGTCAGCTTGGCAAGAAGCTGCAGGCGAGTTGGAGCACGGTGCAGA
GCCGAGTCCAGGATCCGGAACTCGCCTCGAAAGTGAAGGAGCGGGCGAGT
TCGGGGTGGTCGGCCTTGGCCACGGGGGCAGCGACGTTGTGGAGCAAAAC
GGCCGACTTGACCGTGGATTTGGTCCGGGACATTACCAAGGAGGAGGACG
AGCCCATTCGCTTCTACAACAGGTTGGGGGAAGGCGAGGAAAGGGGAACA
GGAGCTGCAGTAAGGGCAGAGGGCAGGAGTGGTGCTGGCAATGTAGGGGG
GAGAAGGAATATGGGTCGATTTCAGCAAGACTTGCGGAACGGCAGCAGCG
AGGAAGAAACCTCCATGCTGGACAGAGGGGCAGATGCCCCATATCTTGGC
AGCTACGAAAGAGACGGGAGCGGAAGCAGCCGTCTTCAGGCGCCCCTCCA
CGCTGCGACCCAGCCGCAGACCTCAGGCGCCCGGAAACGGGATGGATGGG
ACGACGACGATGAAGACTTTCTCGGAGCCGCAGCTCACGACCAGAACGGG
GGCTGGCAGGAGGCAAGTAGACGGGCTCCGACCGCGGCAGCCTCCATGTC
TATTAGCGGCCTGCGGAATACACCTCCCCCTCGGCCGCTGCCTTCAGGTG
GAAGTGCCCCTGTTCCTTCCTCGTCCTCTTCCTCCGCTGTCGCCGCTGCT
TCCGGTGACGATGCCTTAGACTTGGATGTGGATGCTTTCGTGTCTAATGT
CCGTATCTCTGACACGTCGGCGAAGTCGGCGCAAGGGACGAAAGCCGCCC
TTGCGAAGGACGAGGATTTTTTCTCCACTTTCGGTGTCTATTTTTATCTT
GAAAGCAACTGTGTTGTTTCATATGGTCTCATTGTAGCTTTCAACCATGC
GGATTCTGCGATAATTTGTTTGGGGCCTGGTCAATGGGTGAAAGTGGAAC
AAGGGAGGGCCGAATATCGAGCACAAGGTGGGCGAATAAACAGTAAGGTG
TCGTGTATTTTGTCAGGTATGAGCGCGTCAAAACTGTTAGGTGCCTTTTA
TTCTTCATCTTGTGCTCTTCGAGAACCTACCGCGACAAACGTTTCGCACG
ACTTACTTCTTAGGTGCTCAGGATGA

protein sequence of rna155

>rna155-protein ID=rna155-protein|Name=rna155|organism=Nannochloropsis gaditana|type=polypeptide|length=388bp
MPHLPEDKLRTQKAFQFLTFNRSQRRSSSFMLFSLCLLIFILRGHGAEDY
YKTLGVKRSASQSEIKKAWRKLSLDLHPDKNNSPDAQEKFATASNAYTIL
SNEERREVYDREGEEGLKRMEAREAQGNMDPFGGGIFEAFGFGGFGGGGR
RRDEEAKTPNVVIPLRVSLKQLFTGDLLEVTYIRQVLCMNHKDCTKPAPE
CQGPGIRLRQQQLAPGFIQQVQVRDETCVARGKAWRKGCSACPNGQTQPE
EVKLTVDIQPGMKDGEMITFSDVADEKVGHSAGDLVVHVQAIPHEFYTRH
GDDLRVSLKVGLLDALVGFETTVKQVDGRDVKLNKPTVTSHGEVQRVKGQ
GMPKSGGSGLGDLLITWEVTFPEALTDEQKALLKKALA

mRNA from alignment at CM002455.1:401276..403725+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna155 ID=rna155|Name=rna155|organism=Nannochloropsis gaditana|type=mRNA|length=2450bp|location=Sequence derived from alignment at CM002455.1:401276..403725+ (Nannochloropsis gaditana)
cctccctgcaccCATggccccgctctcctcgcccctaAAATTCACACCAC
CCACGCAATAAATGTAGCACGGAATTCCATTCGCACCCCACAATCTTGTA
TCTGTTTCGTACGTCATTGGCGGTAGCCCCTAGGTATTCGCTCGCCATTT
ATTTCGTGAAAAAGGCTCTCGCGCGGTCCCCGACGACCTCTTCGTCATCA
GCCACCTTTCCACCATGCCGCATCTACCGGAAGACAAGCTACGCACACAG
AAAGCATTCCAATTCCTGACTTTCAACAGAAGTCAAAgacgctcttcttc
tttcatgcTTTTCAGTCTTTGCTTGTTGATCTTTATTCTGCGTGGGCACG
GAGCGGAGGACTACTACAAAACCCTGGTGAGGTTACCTTGGAGTTAATGA
GAGAGGACTGGTAGGATTCAATCTCTCGGAATGAAGCATGTCGCCGCTTT
CAAATGATAGGCCGCCGTAGCAATGCGAATTGTGTACGAGTTGGTCCCAG
GGGGCGCGAAAAGGAGTGATGCCATTCTCAACgaccccccacccctcttc
aTCCTTGTGCTCATCGCTTCAACACTCACACAGGGCGTAAAACGGTCTGC
TTCACAATCGGAAATAAAAAAGGCTTGGCGCAAGTTATCACTAGATCTGC
ACCCCGACAAAAACAACAGGTGCGTGTACATGAACTTGCCTTGGCGTTTT
GCGTCTCTCGAGGGGCGCACGTGAGCTACTAATCTGCAGCCCTTCCTGAC
GACAAGCTTGAGGCTGGGTTATGTAATTGATGTAACAAGTACTATTCGTT
GACTCCAAGCATCCCAATTAAAGTTGGGCTTGGCGAGTCGGTCACAACTT
AtgtcccttctttccctcatttactttcccccttcgccatcGACAGCCCT
GACGCCCAAGAAAAGTTTGCCACTGCCTCGAATGCATACACGATCCTCTC
CAACGAGGAACGCCGGGAGGTGtacgacagggagggagaagaagggttgA
AGCGTatggaggcgcgggaggcccAAGGGAACATGGACCCCTTCGGCGGC
GGAATCTTCGAGGCCTTCGGCTTTGGGGGctttggaggtggcggccgtcg
acgggacgaggaggcgaagacgCCGAACGTGGTGATACCCCTCCGCGTCT
CGCTCAAGCAGCTCTTCACCGGGGATTTGCTGGAGGTCACCTACATTCGG
CAAGTCCTGTGCATGAACCACAAGGACTGCACGAAGCCCGCGCCCGAATG
CCAAGGCCCTGGCATCCGCctgcggcagcagcaactgGCCCCGGGCTTCA
TCCAGCAGGTGCAAGTACGGGACGAGACCTGCGTGGCCCGTGGCAAAgct
tggaggaagggttgcTCGGCTTGCCCGAACGGGCAGACGCAGCCGGAAGA
GGTGAAGCTGACGGTGGACATCCAGCCGGGGatgaaagacggggagaTGA
TTACCTTCTCCGACGTGGCGGACGAGAAGGTCGGGCACAGTGCGGGGGAC
CTGGTGGTGCACGTCCAGGCCATCCCCCACGAGTTCTACACGCGGCACGG
GGACgacctccgggtatccttgAAGGTGGGCCTCTTGGACGCGCTTGTGG
GCTTTGAGACGACCGTGAAGCAGGTGGACGGCAGGGACGTCAAGTTAAAC
AAACCGACCGTAACCTCTCACGGCGAGGTGCAGCGTGTCAAGGGACAGGG
CATGCCTAAGTCAGGCGGATCGGGCCTGGGCGACCTGCTTATCACCTGGG
AAGTGACATTCCCGGAGGCGTTGACGGACGAGCAAAAAGCTCTGTTGAAA
AAGGCTTTGGCTTAAGCTGAACTTCTGGTGGGGGCAAAAAGGGGGCATCT
GAGGGTCCTGGGGCTGGAGCTTGTGCAGCTGTACGAGTTGATTGCAAGAG
TTGGGTAAATTACAGCCGTGACAGAACTTTCAGGAAGGTCCAATAGGTAG
GAACGGAATGGATGCGACGGAGATACCTCACACTGGGTATTGCCGAGAAA
ATAGGAAGGGATCAGAGGGGATAAGTCTCACATGCAACGATGCGGCAAAA
ACAGCTTCGTGGAACATGTACGGTATGGTGGGATGTTAAGAGGTGAGAAA
CTCTGTAGACTGTAGACCGCGTTTTGTAAGCCGAACAacccggcgggggg
gggttaTTTTGTCGAGGATAGATGGCAAAATGCGAAATGGAAACGACGAG
TGAGAAAAGTAGGAAAGCATACGATAGCACGGTCAGCATCGCTAGCCATA
ATAGGATGACTTAAAAAGCTATGGAGCCAACAATCAATAATGGTACAGGT
TCATGTGACTGTTTCCTGTTGCATTCTAGAGACTGCGGGATGGAGACTTT
CTTTGACCTGTCcccgaaaaaaaggaagaggactgTAAGATCTTGTGAGT
TACTGCCCACGTCGATAATCCTCCTCGCAGATGCATTTTTTTAACTTTCT

Coding sequence (CDS) from alignment at CM002455.1:401276..403725+

>rna155 ID=rna155|Name=rna155|organism=Nannochloropsis gaditana|type=CDS|length=3501bp|location=Sequence derived from alignment at CM002455.1:401276..403725+ (Nannochloropsis gaditana)
ATGCCGCATCTACCGGAAGACAAGCTACGCACACAGAAAGCATTCCAATT
CCTGACTTTCAACAGAAGTCAAAgacgctcttcttctttcatgcTTTTCA
GTCTTTGCTTGTTGATCTTTATTCTGCGTGGGCACGGAGCGGAGGACTAC
TACAAAACCCTGGGCGTAAAACGGTCTGCTTCACAATCGGAAATAAAAAA
GGCTTGGCGCAAGTTATCACTAGATCTGCACCCCGACAAAAACAACAGCC
CTGACGCCCAAGAAAAGTTTGCCACTGCCTCGAATGCATACACGATCCTC
TCCAACGAGGAACGCCGGGAGGTGtacgacagggagggagaagaagggtt
gAAGCGTatggaggcgcgggaggcccAAGGGAACATGGACCCCTTCGGCG
GCGGAATCTTCGAGGCCTTCGGCTTTGGGGGctttggaggtggcggccgt
cgacgggacgaggaggcgaagacgCCGAACGTGGTGATACCCCTCCGCGT
CTCGCTCAAGCAGCTCTTCACCGGGGATTTGCTGGAGGTCACCTACATTC
GGCAAGTCCTGTGCATGAACCACAAGGACTGCACGAAGCCCGCGCCCGAA
TGCCAAGGCCCTGGCATCCGCctgcggcagcagcaactgGCCCCGGGCTT
CATCCAGCAGGTGCAAGTACGGGACGAGACCTGCGTGGCCCGTGGCAAAg
cttggaggaagggttgcTCGGCTTGCCCGAACGGGCAGACGCAGCCGGAA
GAGGTGAAGCTGACGGTGGACATCCAGCCGGGGatgaaagacggggagaT
GATTACCTTCTCCGACGTGGCGGACGAGAAGGTCGGGCACAGTGCGGGGG
ACCTGGTGGTGCACGTCCAGGCCATCCCCCACGAGTTCTACACGCGGCAC
GGGGACgacctccgggtatccttgAAGGTGGGCCTCTTGGACGCGCTTGT
GGGCTTTGAGACGACCGTGAAGCAGGTGGACGGCAGGGACGTCAAGTTAA
ACAAACCGACCGTAACCTCTCACGGCGAGGTGCAGCGTGTCAAGGGACAG
GGCATGCCTAAGTCAGGCGGATCGGGCCTGGGCGACCTGCTTATCACCTG
GGAAGTGACATTCCCGGAGGCGTTGACGGACGAGCAAAAAGCTCTGTTGA
AAAAGGCTTTGGCTTAAATGCCGCATCTACCGGAAGACAAGCTACGCACA
CAGAAAGCATTCCAATTCCTGACTTTCAACAGAAGTCAAAgacgctcttc
ttctttcatgcTTTTCAGTCTTTGCTTGTTGATCTTTATTCTGCGTGGGC
ACGGAGCGGAGGACTACTACAAAACCCTGGGCGTAAAACGGTCTGCTTCA
CAATCGGAAATAAAAAAGGCTTGGCGCAAGTTATCACTAGATCTGCACCC
CGACAAAAACAACAGCCCTGACGCCCAAGAAAAGTTTGCCACTGCCTCGA
ATGCATACACGATCCTCTCCAACGAGGAACGCCGGGAGGTGtacgacagg
gagggagaagaagggttgAAGCGTatggaggcgcgggaggcccAAGGGAA
CATGGACCCCTTCGGCGGCGGAATCTTCGAGGCCTTCGGCTTTGGGGGct
ttggaggtggcggccgtcgacgggacgaggaggcgaagacgCCGAACGTG
GTGATACCCCTCCGCGTCTCGCTCAAGCAGCTCTTCACCGGGGATTTGCT
GGAGGTCACCTACATTCGGCAAGTCCTGTGCATGAACCACAAGGACTGCA
CGAAGCCCGCGCCCGAATGCCAAGGCCCTGGCATCCGCctgcggcagcag
caactgGCCCCGGGCTTCATCCAGCAGGTGCAAGTACGGGACGAGACCTG
CGTGGCCCGTGGCAAAgcttggaggaagggttgcTCGGCTTGCCCGAACG
GGCAGACGCAGCCGGAAGAGGTGAAGCTGACGGTGGACATCCAGCCGGGG
atgaaagacggggagaTGATTACCTTCTCCGACGTGGCGGACGAGAAGGT
CGGGCACAGTGCGGGGGACCTGGTGGTGCACGTCCAGGCCATCCCCCACG
AGTTCTACACGCGGCACGGGGACgacctccgggtatccttgAAGGTGGGC
CTCTTGGACGCGCTTGTGGGCTTTGAGACGACCGTGAAGCAGGTGGACGG
CAGGGACGTCAAGTTAAACAAACCGACCGTAACCTCTCACGGCGAGGTGC
AGCGTGTCAAGGGACAGGGCATGCCTAAGTCAGGCGGATCGGGCCTGGGC
GACCTGCTTATCACCTGGGAAGTGACATTCCCGGAGGCGTTGACGGACGA
GCAAAAAGCTCTGTTGAAAAAGGCTTTGGCTTAAATGCCGCATCTACCGG
AAGACAAGCTACGCACACAGAAAGCATTCCAATTCCTGACTTTCAACAGA
AGTCAAAgacgctcttcttctttcatgcTTTTCAGTCTTTGCTTGTTGAT
CTTTATTCTGCGTGGGCACGGAGCGGAGGACTACTACAAAACCCTGGGCG
TAAAACGGTCTGCTTCACAATCGGAAATAAAAAAGGCTTGGCGCAAGTTA
TCACTAGATCTGCACCCCGACAAAAACAACAGCCCTGACGCCCAAGAAAA
GTTTGCCACTGCCTCGAATGCATACACGATCCTCTCCAACGAGGAACGCC
GGGAGGTGtacgacagggagggagaagaagggttgAAGCGTatggaggcg
cgggaggcccAAGGGAACATGGACCCCTTCGGCGGCGGAATCTTCGAGGC
CTTCGGCTTTGGGGGctttggaggtggcggccgtcgacgggacgaggagg
cgaagacgCCGAACGTGGTGATACCCCTCCGCGTCTCGCTCAAGCAGCTC
TTCACCGGGGATTTGCTGGAGGTCACCTACATTCGGCAAGTCCTGTGCAT
GAACCACAAGGACTGCACGAAGCCCGCGCCCGAATGCCAAGGCCCTGGCA
TCCGCctgcggcagcagcaactgGCCCCGGGCTTCATCCAGCAGGTGCAA
GTACGGGACGAGACCTGCGTGGCCCGTGGCAAAgcttggaggaagggttg
cTCGGCTTGCCCGAACGGGCAGACGCAGCCGGAAGAGGTGAAGCTGACGG
TGGACATCCAGCCGGGGatgaaagacggggagaTGATTACCTTCTCCGAC
GTGGCGGACGAGAAGGTCGGGCACAGTGCGGGGGACCTGGTGGTGCACGT
CCAGGCCATCCCCCACGAGTTCTACACGCGGCACGGGGACgacctccggg
tatccttgAAGGTGGGCCTCTTGGACGCGCTTGTGGGCTTTGAGACGACC
GTGAAGCAGGTGGACGGCAGGGACGTCAAGTTAAACAAACCGACCGTAAC
CTCTCACGGCGAGGTGCAGCGTGTCAAGGGACAGGGCATGCCTAAGTCAG
GCGGATCGGGCCTGGGCGACCTGCTTATCACCTGGGAAGTGACATTCCCG
GAGGCGTTGACGGACGAGCAAAAAGCTCTGTTGAAAAAGGCTTTGGCTTA
A

Synonyms

Publications