rna1546, rna1546 (mRNA) Nannochloropsis gaditana

Overview
Namerna1546
Unique Namerna1546
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1380
Alignment locationCM002457.1:904267..904956 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g25.6520.mrna
Orig protein idgnl|cribi|Naga_100007g25.6520
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:904267..904956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g25gene1490Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29193.1cds1542Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1546rna1546-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1546 ID=rna1546|Name=rna1546|organism=Nannochloropsis gaditana|type=mRNA|length=1380bp
ATGACAGAGCAAAGGAGGGCCAGTTTTAGAGGTCTGACTATAGATACAAA
TACACCACAACATGTCAATCCTCAATTAAGCCCCGCCGTAACTCCAACGG
GGTCTCAAGGCACTCCTCGGAGTTGGTTTGGCACCTCTTCCGGACTGACG
GATCCTCGCTCTTGGCTGCAGTCCCCACGCAAATGGGCCAACAATCGAAC
TCCCACCAACCAAGGTGGTAACTCGACTCCTAACACAAGGAAACTGGTTG
CCTATTTTAATACCCTACATAAGCCGAAGGTTGAAGAGTTCTTGAACGAG
TGTGATGACGAGGGGAATGGAAGACCCTCATGTAGTACCAGCAAAAAGGA
TTCAGCGACCGCCACGGCAACAGCGTCCCCGATTCCCTCTACTCTGGCAA
ATATTATGCACCAAACTGATAAGGACGGCAAATCCCAACACGTTGCCGCT
CAACTGCCCTCTTCTTGTCAGGAAAGCGAGCATCAAGAGGTGGAGCCTGC
GCCGGAGACGTCCTTCTTCAGCCGCGTGGTGGGGCGCATGGCCCGTCTGA
ATTTTTCAGATGGTCACGACTTAGAAGTACGTGCATCGACTGCACCTTCC
TCAACTTTGATGAAGAACGGCGGGCATCGTCGTCAAGTTTCGCCAAAGCC
AGTCAAGATGTCCGGTCCCAAAGGTCAAAGCCAGAGTCCCGATTTACTTG
GAGAAGTACACGCGGCAGACAGGGGGAAAAAATGCCTCGTACTAGACTTA
GATGAGACTTTGATTCACTCGTCTTTTCAGCCTGTTGAAGACGCTGACTT
TGTCATACCCATTGTCATCGAAGGGAGTCAGTATCAGGTATACGTCCTAA
AGCGGCCAGGCGTAGATGGCTTCCTGGAGCGCGTAGGCAGGGACTACGAG
GTCGTCATCTTCACTGCATCTCTAAGCCTCTACGCAGATCCTCTCCTAGA
TGAACTGGACGTCCATAAGGTCATACGTCACCGCCTATACCGTGAAAGTT
GCACCTTTTTCCAAGGCAGCTACGTGAAGGATATGAGGCGTTTGGGTCGG
GACATTAGTCAGGTCATTCTGGTTGACAACTCGCCGCTTTCCTACATGTT
TCAGCCAGAAAATGCAATTGGATGTTCTTCATACATTGATGCAACCTCCG
ATGTGGAGCTCGGTGTGATTGCGGCTTTCTTGGAGGACGTAAAGGAGTGC
GAGGATGTTCGGGAGCACTGCCGCAACTGGCGAAAATGGGGTGATTTGGG
AATCATTTTTAATACTCCGCTATGCAACATCGTTTCATGCAGAAGCCAAG
GACAGAAGCGGGGCCACACTAACATGTGCAATTTGTGCTGCCATGAAAAT
CAAAGTCATAAAACATACTTTTTGCAGTGA
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protein sequence of rna1546

>rna1546-protein ID=rna1546-protein|Name=rna1546|organism=Nannochloropsis gaditana|type=polypeptide|length=229bp
MTNEGQVDICNLTISIAGLDTATYKTPAWLPTYPKDKSFKAGTYFPFTAI
LPINADSLASYRYPTVDVRTGFFACDAALRALPEDQVVPAPGTSRSSIEA
DDDFPGSNSGNSNNFGSKIRWSGLRTSAGAQMDCLGTCLANLHKQGDDCA
AAAYVLHSGCLQNCPDTVPQWMVDACTKASCAAAQCALKTSASGPRRGGV
GGSFAYFYYLMLGLIVYVGLWSLRNEGSF
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mRNA from alignment at CM002457.1:904267..904956-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1546 ID=rna1546|Name=rna1546|organism=Nannochloropsis gaditana|type=mRNA|length=690bp|location=Sequence derived from alignment at CM002457.1:904267..904956- (Nannochloropsis gaditana)
ATGACGAATGAGGGGCAGGTCGACATATGTAATCTCACCATCAGCATTGC
TGGGCTAGACACAGCCACATACAAGACGCCCGCCTGGCTTCCAACGTACC
CCAAAGACAAGAGCTTCAAAGCAGGGACGTACTTTCCTTTTACAGCAATT
CTGCCAATCAACGCAGACTCGCTGGCATCTTACAGGTATCCCACTGTTGA
TGTGCGCACTGGTTTTTTCGCGTGTGACGCTGCTTTGCGTGCTTTACCGG
AGGATCAAGTGGTGCCGGCGCCCGGGACAAGCCGATCTTCTATTGAGGCC
GATGATGACTTTCCCGGTTCAAACTCTGGCAATAGCAATAACTTTGGCTC
CAAGATCAGGTGGTCGGGCTTGCGAACATCCGCAGGTGCGCAGATGGACT
GTTTGGGTACCTGCTTGGCCAATCTACATAAACAAGGAGACGATTGTGCG
GCCGCGGCATACGTGCTACACTCTGGATGTCTTCAAAATTGTCCAGACAC
AGTTCCTCAATGGATGGTCGATGCTTGCACTAAGGCCAGCTGTGCTGCCG
CGCAGTGTGCTCTCAAGACATCGGCATCCGGACCTCGTCGTGGTGGCGTC
GGAGGTAGCTTCGCATATTTTTATTACCTCATGTTAGGGTTGATAGTTTA
TGTAGGTTTGTGGTCATTGAGGAATGAAGGATCATTCTGA
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Coding sequence (CDS) from alignment at CM002457.1:904267..904956-

>rna1546 ID=rna1546|Name=rna1546|organism=Nannochloropsis gaditana|type=CDS|length=690bp|location=Sequence derived from alignment at CM002457.1:904267..904956- (Nannochloropsis gaditana)
ATGACGAATGAGGGGCAGGTCGACATATGTAATCTCACCATCAGCATTGC
TGGGCTAGACACAGCCACATACAAGACGCCCGCCTGGCTTCCAACGTACC
CCAAAGACAAGAGCTTCAAAGCAGGGACGTACTTTCCTTTTACAGCAATT
CTGCCAATCAACGCAGACTCGCTGGCATCTTACAGGTATCCCACTGTTGA
TGTGCGCACTGGTTTTTTCGCGTGTGACGCTGCTTTGCGTGCTTTACCGG
AGGATCAAGTGGTGCCGGCGCCCGGGACAAGCCGATCTTCTATTGAGGCC
GATGATGACTTTCCCGGTTCAAACTCTGGCAATAGCAATAACTTTGGCTC
CAAGATCAGGTGGTCGGGCTTGCGAACATCCGCAGGTGCGCAGATGGACT
GTTTGGGTACCTGCTTGGCCAATCTACATAAACAAGGAGACGATTGTGCG
GCCGCGGCATACGTGCTACACTCTGGATGTCTTCAAAATTGTCCAGACAC
AGTTCCTCAATGGATGGTCGATGCTTGCACTAAGGCCAGCTGTGCTGCCG
CGCAGTGTGCTCTCAAGACATCGGCATCCGGACCTCGTCGTGGTGGCGTC
GGAGGTAGCTTCGCATATTTTTATTACCTCATGTTAGGGTTGATAGTTTA
TGTAGGTTTGTGGTCATTGAGGAATGAAGGATCATTCTGA
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Synonyms
Publications