rna1537, rna1537 (mRNA) Nannochloropsis gaditana

Overview
Namerna1537
Unique Namerna1537
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1161
Alignment locationCM002457.1:885330..886375 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g33.6534.mrna
Orig protein idgnl|cribi|Naga_100007g33.6534
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:885330..886375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g33gene1481Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1537rna1537-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29207.1cds1534Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1537 ID=rna1537|Name=rna1537|organism=Nannochloropsis gaditana|type=mRNA|length=1161bp
ATGTCTGCAAAAGCTATGTCGGTGGCGCTGCCCACTGCTCCGCCTGTGGC
GTCAGCGGGCTTGGACATCGACCTCGCGCTTGTCCAAGAGGCCGCTCAGA
CCATCAAAGCTTCCGTGCACCGCACGCCTGTCCTACGATGCCACGCTATT
GAAAATGCGGCGTTAAGGAATGATTCAAATTTATCTTTCAGGCCGGAGTT
CTTTTTCAAGTGCGAGCTTTTCCAGAAGACGGGTTCTTTTAAGGTCCGCG
GCGCCTTGAACGCCGTGGCCCACTTGCCGTCAACTGTGACCGACGTCGTC
ACACACAGCAGTGGAAACCATGCACAAGCCCTCGCTTGGGCCGCCCGTAC
TAAAGGACTACGTGCCCATATCGTGATGCCGCGTACAGCCCCCAAGGTAA
AAGTTGATGCTGTTAAAGGCTACGGTGGACAGGTTTATTTGTGTGAGCCT
ACAGTAGAGGCCCGATGGGCCATGGCAGGAGAGCTGGTCGCATCAACAGG
AGGCGCATTGGTGCATCCATCGGATGACTATTCCGTTATGGCAGGACAGG
GTACGGTAGCTTTGGAATTTCTTGAGCAGGTCGAGGAAGAAACGGGGGGA
ATGTCTCTCGACGCCCTCATCATTCCGGTGGGCGGAGGGGGGCTACTTGG
TGGCATGGCAGTGGCAGCCAAAGCGCTCCAACCCCACATTAAGATTATTG
GGGCGGAACCTTCGATGGTCGATGATGCGTTCCGGTCCAAAGCTGCGGGC
CATTTGTGCCTGCACCCGTCCCCCACACCACGGAGCATTGCGGACGGTCT
ACTCACTGTATTGGGGCAACGCACGTATCCCATCGTGTCTTCAGACAAAG
TGGACGCAATAATAACAGTATCGGAGCAAGAGATTGCGCAAGCCATGCGT
CTGGTGTACGAAAGGATGAAGTTGGTGATAGAGCCAAGTGCGGGAGTAGG
GGTGGCCGTTGCGATGAGAGGCGACGAGCTCGAGGCCGTGCTCGGCATCG
GATGCCGGCGGGTCGGTGTGATACTGTGCGGTGGCAATCTCGACATGGAT
AGGCTGGGCGGGATATGGCGCTTAGCGAGAGGAGAGGACGACGTGATGAG
GGATAGGGAAGGGTCGGAGAGAGGAGAGAGAAACGACCAAGACGGGGTTG
ACACCAAGTAA
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protein sequence of rna1537

>rna1537-protein ID=rna1537-protein|Name=rna1537|organism=Nannochloropsis gaditana|type=polypeptide|length=155bp
MVLTQKNVALALMAICLLGAAMTQAFVVPAPGRALSLHTRSSTSQHKRSQ
QYNFMHLLSGTSSCKRKRDLIKMEVDPAVIGGVIAGVVGVSLGVGAMIFT
EKQTLRREERKAADKEKAARAQRAAAAAAASTAAQSSEGGSQGGDGGIAE
DEDGW
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mRNA from alignment at CM002457.1:885330..886375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1537 ID=rna1537|Name=rna1537|organism=Nannochloropsis gaditana|type=mRNA|length=1046bp|location=Sequence derived from alignment at CM002457.1:885330..886375+ (Nannochloropsis gaditana)
AATCACACGAATATTGTAGCAGAAAAAGAATGGTGGAGTCTTGATCTGGG
ATACTTTCAATTGTGCTCGAGACATAATTTTCATGCCTGCGTCGGAAGCA
TGAGGTGGCGAGTTGTTGAGATAATATAAGTCGTCCGCTGGAATACACGC
TAGGGAGTCTCCGGTTCTTGCCCTGCCCTTTCCAACCCAAACAACTTATA
CCATGTGAAACCACTCTAATAATGTGATTATTTTACAATTTTCACAGACA
CTGCGCCACGATGGTCTTAACACAAAAAAATGTTGCCCTCGCCTTGATGG
CAATCTGCCTCCTAGGAGCCGCGATGACTCAAGCCTTCGTCGTTCCAGCC
CCAGGTCGAGCGCTCAGCTTGCATACAAGGTCGTCCACATCTCAGCATAA
GAGATCACAGCAGTATAATTTCATGCATCTTTTGAGTGGTACCTCTTCAT
GTAAACGCAAGCGCGATCTCATAAAGATGGAAGTCGATCCCGCTGTCATC
GGGGGCGTGATCGCAGGTGTGGTGGGAGTTAGTCTGGGAGTGGGCGCGAT
GATTTTCACGGAGAAGCAAACACTGCGGCGTGAAGAGCGAAAGGCGGCCG
ATAAAGAAAAGGCTGCAAGGGCACAACgggcagcggcagctgccgccgcc
tcgaCAGCCGCACAATCATCTGAAGGAGGCtcgcaaggaggggatggagg
gattgcagaggatgaggacggtTGGTAAAGCACTGGTTGATGAGAAGCTG
AAGAATTGGTCTTTTACAGTTGTTAAGTGGAGACAAAAGGATATGAAACC
TacgaggggaggttgagaaaGGGGATGTTGACGCCCAGGGAGGCGATAAA
CCTGTGCTCGGCTGGTCAGTGTTTATTTGATTGCGTAGCCACTTGCGCCC
TCAACGCAGGGGGACAAGACTGTGATGTACGACGTGCGAAGCAAATCGAA
AGGAATAACAAGCGCTTTAGGGCGACAAATCGAAAGTGACGCTTCAGAGG
GGGtctgcgaggaggacggctgAAAGAAATGCATTCTTGGGTTTCC
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Coding sequence (CDS) from alignment at CM002457.1:885330..886375+

>rna1537 ID=rna1537|Name=rna1537|organism=Nannochloropsis gaditana|type=CDS|length=468bp|location=Sequence derived from alignment at CM002457.1:885330..886375+ (Nannochloropsis gaditana)
ATGGTCTTAACACAAAAAAATGTTGCCCTCGCCTTGATGGCAATCTGCCT
CCTAGGAGCCGCGATGACTCAAGCCTTCGTCGTTCCAGCCCCAGGTCGAG
CGCTCAGCTTGCATACAAGGTCGTCCACATCTCAGCATAAGAGATCACAG
CAGTATAATTTCATGCATCTTTTGAGTGGTACCTCTTCATGTAAACGCAA
GCGCGATCTCATAAAGATGGAAGTCGATCCCGCTGTCATCGGGGGCGTGA
TCGCAGGTGTGGTGGGAGTTAGTCTGGGAGTGGGCGCGATGATTTTCACG
GAGAAGCAAACACTGCGGCGTGAAGAGCGAAAGGCGGCCGATAAAGAAAA
GGCTGCAAGGGCACAACgggcagcggcagctgccgccgcctcgaCAGCCG
CACAATCATCTGAAGGAGGCtcgcaaggaggggatggagggattgcagag
gatgaggacggtTGGTAA
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Synonyms
Publications