rna1536, rna1536 (mRNA) Nannochloropsis gaditana

Overview
Namerna1536
Unique Namerna1536
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2312
Alignment locationCM002457.1:883959..885119 -

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Properties
Property NameValue
Productserine racemase
Orig transcript idgnl|cribi|Naga_100007g34.6521.mrna
Orig protein idgnl|cribi|Naga_100007g34.6521
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:883959..885119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g34gene1480Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29194.1cds1533Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1536rna1536-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1536 ID=rna1536|Name=rna1536|organism=Nannochloropsis gaditana|type=mRNA|length=2312bp
GCTCAACGTCTGCTGCATATTCATACTTTTAAGCAGCTCAGCCGTAAGAT
TTAATAGCAATCGGCCCTCATCCATTTCTCGTAAAGACAGTAAGTCTTGG
TTGGGATGTATCAGGCGTAAATCCGACGCACTAGCCTCAGCACTCTGTGC
CGGCCGAGTTCCATCGATTGCTACGTATGCACTGGCTCGAAGCATAGACT
GTTTTGATTTGCAAGTTGAATGATCGAGGATTTAGTAATTGAGGATTTAA
ACCTGCCCGGATGCGAGGCTAGCTGGGGACGTAGTGCGTACCATCACGTA
GTCCAAGATGCCGGCTTGACCTAGCGCCTGTCGCAATAGGCCCTTCACCT
CTATCACGTCAACACTTGTGTTGGCTTTGAGACGCGCCGCGTCCTGAGGT
TCGTCGGAAGGCACATCAGTAGGCACCGAGGCCGCCTCTGAGGCGTGAAT
TGAGTCAAGTGGTCGTGGTGAGGGCGTTTTCAACTCCATCTTGTCGCTAC
TCTGCACAATCGTCTGTTTTTGTGCAAATACATGAGACGAGGACGGCATG
GCAGTCTAGCAAGTGCTGTGATGTGCGTCGTCCGCCCCAACCGGAGGCAG
GCGGAGAGGAACATTCCCCCTCGCGAACAAGCGACAGGCGTGCGAGACGA
CCACCCCTGCGAGTCGCCATCTTCTGATTGACCCACCTGTTTCCTCGTCC
CCAGGGAAATCAGGCGAATTGGGGTATACAACGCCATCAGCGGGCACCCA
ACAATCAAGTTCGTCCTTGCTTGGCGTGATATTGGCCTCCTTTAAGACGG
CGCCTTCCAGGGATCGGTAGCAGGCGCGTCTGGAATTGCATTGTAGCTCA
CACGATAAAAAATCCCCTCCTCCTCCCGTGAAGAGCGGATCTGCATTTCT
TAACTTCTTCAAACCATCCTTAGTATGGCCGGACGCCTATGCGTTGCGCC
GGTTATCATTTTTTTGGTAGTGGGGATGGCACTCACAGGTGAAGGCTTTC
TCTTCAAGTTGCCCCTACTGACACGCAGCGAAACCCGCGGTCACGCCACT
AGCGGCGGTACAGGGAATCGAATCATAGCGTTTAAAATGCAATCACCTTC
CCGTTCAATGAATTCATGGGTGCCGAAAGACCGCCGGAATATGCTGGAGA
CATTATCCACCGCGACCCAGCACCTGGAGGACCTGGGTATTGAGGAGGAC
GCTCACGGCTTTCAAGAGCAACAGGAGCAACAAAGAAGATGGAGGAGACA
ACAACAAAAGCCAAAAGAGTACAAGGTGGGTGTGATCGTCGTCGACCATG
GCTCCCGTCGGAAAGAGGCCAACGAGGCTCTCGAGAGTGTGGCCTCCGAA
TTCAAAGCACTGAGTGGGTACGAGCTCGTGGAGCCTGCGCACATGGAGCT
TTGTGAGCCCTCGATCGCCACAGCATTTGGTCGGTGCGTTGAACGCGGGG
CCACTTTCATAATCTGCCATCCCTTCTTCCTATCCCGCGGGCGGCACGTG
GCAGAGGACATCCCCAACCTCTTAGAGGAAGCCGCTTCCATCTTCCCGGG
TGTGGAGTGGGCCCTATCGCAGCCACTGGGGTTGCAGGCTGATATCCCCC
GCTTAATGCAGCAAGCCGTTGAGGAATGCATCGCGGAGAAGAACATCCAG
TCGGAGGACCACGCAGACGGGCTGCCCATGCCGGAGTTCAATATTTAGGG
TCTTGAACCGGAGCGACAGGAGCAGGCCTTGATGGGAAAAGAATAAGCAA
TGGACAGTCGACTTAACGTCCATGGAGCATTTTTGTTTCGTGTAGGTAGG
ACATGGAAGAAAAGCTGTTGCTGCCGTGGTAGGCGTTCGGCCTCCGTGCG
AGATTTTTGCAAATTGAGGTGCTGCGGATCATCCCGGCTGCTGAGTCGTG
GGAGAGGGAACTTTTCCTCGGAATTAAAGTGGATACCTGTACAATTGATT
GGCATAATGTGAAGGACTTTGGTTTGCTTGAGTGCAGTACAGCAATGCGT
GTGCAAGAAAAAGCAGAAAACAGAAACTTGTAAGTACATCAGTGTGATCG
GGTCATAGACTCGTACGATTATTACTTGGCTCAGAGGTCAATTAACCGGC
TTCGCATGCTGTCGTGCACACTGTGGATGGAGCGTGCACAAAGCCCCAGA
AAGGGCCTCCCGCGGTCCCTTTACTTGGTGTCAACCCCGTCTTGGTCGTT
TCTCTCTCCTCTCTCCGACCCTTCCCTATCCCTCATCACGTCGTCCTCTC
CTCTCGCTAAGCGCCATATCCCGCCCAGCCTATCCATGTCGAGATTGCCA
CCGCACAGTATC
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protein sequence of rna1536

>rna1536-protein ID=rna1536-protein|Name=rna1536|organism=Nannochloropsis gaditana|type=polypeptide|length=386bp
MSAKAMSVALPTAPPVASAGLDIDLALVQEAAQTIKASVHRTPVLRCHAI
ENAALRNDSNLSFRPEFFFKCELFQKTGSFKVRGALNAVAHLPSTVTDVV
THSSGNHAQALAWAARTKGLRAHIVMPRTAPKVKVDAVKGYGGQVYLCEP
TVEARWAMAGELVASTGGALVHPSDDYSVMAGQGTVALEFLEQVEEETGG
MSLDALIIPVGGGGLLGGMAVAAKALQPHIKIIGAEPSMVDDAFRSKAAG
HLCLHPSPTPRSIADGLLTVLGQRTYPIVSSDKVDAIITVSEQEIAQAMR
LVYERMKLVIEPSAGVGVAVAMRGDELEAVLGIGCRRVGVILCGGNLDMD
RLGGIWRLARGEDDVMRDREGSERGERNDQDGVDTK
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mRNA from alignment at CM002457.1:883959..885119-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1536 ID=rna1536|Name=rna1536|organism=Nannochloropsis gaditana|type=mRNA|length=1161bp|location=Sequence derived from alignment at CM002457.1:883959..885119- (Nannochloropsis gaditana)
ATGTCTGCAAAAGCTATGTCGGTGGCGCTGCCCACTGCTCCGCCTGTGGC
GTCAGCGGGCTTGGACATCGACCTCGCGCTTGTCCAAGAGGCCGCTCAGA
CCATCAAAGCTTCCGTGCACCGCACGCCTGTCCTACGATGCCACGCTATT
GAAAATGCGGCGTTAAGGAATGATTCAAATTTATCTTTCAGGCCGGAGTT
CTTTTTCAAGTGCGAGCTTTTCCAGAAGACGGGTTCTTTTAAGGTCCGCG
GCGCCTTGAACGCCGTGGCCCACTTGCCGTCAACTGTGACCGACGTCGTC
ACACACAGCAGTGGAAACCATGCACAAGCCCTCGCTTGGGCCGCCCGTAC
TAAAGGACTACGTGCCCATATCGTGATGCCGCGTACAGCCCCCAAGGTAA
AAGTTGATGCTGTTAAAGGCTACGGTGGACAGGTTTATTTGTGTGAGCCT
ACAGTAGAGGCCCGATGGGCCATGGCAGGAGAGCTGGTCGCATCAACAGG
AGGCGCATTGGTGCATCCATCGGATGACTATTCCGTTATGGCAGGACAGG
GTACGGTAGCTTTGGAATTTCTTGAGCAGGTCGAGGAAGAAACGGGGGGA
ATGTCTCTCGACGCCCTCATCATTCCGGTGGGCGGAGGGGGGCTACTTGG
TGGCATGGCAGTGGCAGCCAAAGCGCTCCAACCCCACATTAAGATTATTG
GGGCGGAACCTTCGATGGTCGATGATGCGTTCCGGTCCAAAGCTGCGGGC
CATTTGTGCCTGCACCCGTCCCCCACACCACGGAGCATTGCGGACGGTCT
ACTCACTGTATTGGGGCAACGCACGTATCCCATCGTGTCTTCAGACAAAG
TGGACGCAATAATAACAGTATCGGAGCAAGAGATTGCGCAAGCCATGCGT
CTGGTGTACGAAAGGATGAAGTTGGTGATAGAGCCAAGTGCGGGAGTAGG
GGTGGCCGTTGCGATGAGAGGCGACGAGCTCGAGGCCGTGCTCGGCATCG
GATGCCGGCGGGTCGGTGTGATACTGTGCGGTGGCAATCTCGACATGGAT
AGGCTGGGCGGGATATGGCGCTTAGCGAGAGGAGAGGACGACGTGATGAG
GGATAGGGAAGGGTCGGAGAGAGGAGAGAGAAACGACCAAGACGGGGTTG
ACACCAAGTAA
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Coding sequence (CDS) from alignment at CM002457.1:883959..885119-

>rna1536 ID=rna1536|Name=rna1536|organism=Nannochloropsis gaditana|type=CDS|length=1161bp|location=Sequence derived from alignment at CM002457.1:883959..885119- (Nannochloropsis gaditana)
ATGTCTGCAAAAGCTATGTCGGTGGCGCTGCCCACTGCTCCGCCTGTGGC
GTCAGCGGGCTTGGACATCGACCTCGCGCTTGTCCAAGAGGCCGCTCAGA
CCATCAAAGCTTCCGTGCACCGCACGCCTGTCCTACGATGCCACGCTATT
GAAAATGCGGCGTTAAGGAATGATTCAAATTTATCTTTCAGGCCGGAGTT
CTTTTTCAAGTGCGAGCTTTTCCAGAAGACGGGTTCTTTTAAGGTCCGCG
GCGCCTTGAACGCCGTGGCCCACTTGCCGTCAACTGTGACCGACGTCGTC
ACACACAGCAGTGGAAACCATGCACAAGCCCTCGCTTGGGCCGCCCGTAC
TAAAGGACTACGTGCCCATATCGTGATGCCGCGTACAGCCCCCAAGGTAA
AAGTTGATGCTGTTAAAGGCTACGGTGGACAGGTTTATTTGTGTGAGCCT
ACAGTAGAGGCCCGATGGGCCATGGCAGGAGAGCTGGTCGCATCAACAGG
AGGCGCATTGGTGCATCCATCGGATGACTATTCCGTTATGGCAGGACAGG
GTACGGTAGCTTTGGAATTTCTTGAGCAGGTCGAGGAAGAAACGGGGGGA
ATGTCTCTCGACGCCCTCATCATTCCGGTGGGCGGAGGGGGGCTACTTGG
TGGCATGGCAGTGGCAGCCAAAGCGCTCCAACCCCACATTAAGATTATTG
GGGCGGAACCTTCGATGGTCGATGATGCGTTCCGGTCCAAAGCTGCGGGC
CATTTGTGCCTGCACCCGTCCCCCACACCACGGAGCATTGCGGACGGTCT
ACTCACTGTATTGGGGCAACGCACGTATCCCATCGTGTCTTCAGACAAAG
TGGACGCAATAATAACAGTATCGGAGCAAGAGATTGCGCAAGCCATGCGT
CTGGTGTACGAAAGGATGAAGTTGGTGATAGAGCCAAGTGCGGGAGTAGG
GGTGGCCGTTGCGATGAGAGGCGACGAGCTCGAGGCCGTGCTCGGCATCG
GATGCCGGCGGGTCGGTGTGATACTGTGCGGTGGCAATCTCGACATGGAT
AGGCTGGGCGGGATATGGCGCTTAGCGAGAGGAGAGGACGACGTGATGAG
GGATAGGGAAGGGTCGGAGAGAGGAGAGAGAAACGACCAAGACGGGGTTG
ACACCAAGTAA
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Synonyms
Publications