rna1534, rna1534 (mRNA) Nannochloropsis gaditana

Overview
Namerna1534
Unique Namerna1534
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length897
Alignment locationCM002457.1:881150..882337 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g37.6515.mrna
Orig protein idgnl|cribi|Naga_100007g37.6515
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:881150..882337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g37gene1478Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1534rna1534-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29188.1cds1531Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1534 ID=rna1534|Name=rna1534|organism=Nannochloropsis gaditana|type=mRNA|length=897bp
ATGCTGAGACGGATAGCTTTGGGTTTGTCAGGAGTTGCGGTATTGCTATC
GGTGTTAAATTGCGATGCCGGCAACCCAAGGAGCCGGCGGGTCCAGTTCG
ATTCGAAAGCCCAGACGTTGCAAGACATTGAAGATTGGAAAGAAGTTGTT
GATCCTGATACATGCCCTGTGAAGCAGTACTCAGTCGCGTTGACGCTAAC
AGCAGTAACTTTGGCCGATGGTCTTTCGTGTTTTAGTGCTGAGGGCGGCG
TCAGTCCATTTGTACAGTTTGAAATGGGAGGGAAGACTATACGCAGCAGA
ACCGAGGAAGACCAACAATTTCCTGTGTATCTTGAAACATTCCAGTTGGG
TTGCCAAGACATTCAAGAGCCTTTAGTCATTTCTGTGGTGAATTCTCAAA
CTGGTCAGACATGCTTCTCGAATACGGTCAGGCACTGGTCCTACGGCCGT
ACAGGCGTTTACACAGATACACAGCCCGCACTCAGTGAAAATGCTCGCTC
GGGTGGTACTGGTCTCATCAAAGACACGCAGCAGAGCTATTCGTACGTGC
TTAAGACGGGCCCCAGTACCATGGATTTGACCATTAATGCCCTTCCGGGT
CCCCAAGAGACAGCTTCCAAATGGAACGTCCACACCCCCGCGGATATCTT
TGGAATCGTCTTCGGCATGATGATCTTCGTTGGTGTTGTGGGTTATTTTG
TGTGGAAAATTCGCAACTCCGCCTCCGGACCTGCACCTGCTCCTGCGCCT
CCCTCTGCGCCCGAAGCTCTGGCAATGTCCTCCCACGGGACCGAAAACCG
GAAAAAGGACCAGAAGACGGGAAAGTCGCACACGGTCGGCGAGATACGAT
TGTTTGGCTGGGATGACCAGGAGCGAGAGAATCAAGATGGATTGTAG
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protein sequence of rna1534

>rna1534-protein ID=rna1534-protein|Name=rna1534|organism=Nannochloropsis gaditana|type=polypeptide|length=331bp
MPSSSHVFAQKQTIVQSSDKMELKTPSPRPLDSIHASEAASVPTDVPSDE
PQDAARLKANTSVDVIEVKGLLRQALGQAGILDYVMSMLRASAYVAIDGT
RPAQSAEASASDLRLIHPNQDLLSLREMDEGRLLLNLTAELLKSMNMQQT
LSVFEREAHLHPNGPILSEEDEITAEKERLSWFSSVREEGAQVLGLDAHA
TGPLLLQLMRRHQQHVVSRLHQGRGEEKEMLDGTVHRDIQQSPAQTAAVE
RENGGENVNQGADEDTTHAEGEMADRNRCSARNEESMSARKSKLSKSNDA
RSIGSETLGNGESGGHGRLERSINDNCMKSD
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mRNA from alignment at CM002457.1:881150..882337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1534 ID=rna1534|Name=rna1534|organism=Nannochloropsis gaditana|type=mRNA|length=1188bp|location=Sequence derived from alignment at CM002457.1:881150..882337- (Nannochloropsis gaditana)
ATGCCGTCCTCGTCTCATGTATTTGCACAAAAACAGACGATTGTGCAGAG
TAGCGACAAGATGGAGTTGAAAACGCCCTCACCACGACCACTTGACTCAA
TTCACGCCTCAGAGGCGGCCTCGGTGCCTACTGATGTGCCTTCCGACGAA
CCTCAGGACGCGGCGCGTCTCAAAGCCAACACAAGTGTTGACGTGATAGA
GGTGAAGGGCCTATTGCGACAGGCGCTAGGTCAAGCCGGCATCTTGGACT
ACGTGATGGTACGCACTACGTCCCCAGCTAGCCTCGCATCCGGGCAGGTT
TAAATCCTCAATTACTAAATCCTCGATCATTCAACTTGCAAATCAAAACA
GTCTATGCTTCGAGCCAGTGCATACGTAGCAATCGATGGAACTCGGCCGG
CACAGAGTGCTGAGGCTAGTGCGTCGGATTTACGCCTGATACATCCCAAC
CAAGACTTACTGTCTTTACGAGAAATGGATGAGGGCCGATTGCTATTAAA
TCTTACGGCTGAGCTGCTTAAAAGTATGAATATGCAGCAGACGTTGAGCG
TATTCGAACGAGAAGCCCACCTACACCCCAACGGTCCCATACTTTCAGAG
GAGGACGAGATCACCGCGGAGAAGGAGCGATTATCGTGGTTCTCTTCTGT
ACGGGAAGAGGGTGCGCAGGTGCTCGGGCTCGACGCTCATGCAACCGGTC
CTCTTCTCTTACAGCTCATGCGACGACACCAGCAACACGTGGTGAGCAGG
CTTCATCAGGGCAGAGGGGAAGAAAAGGAAATGCTCGACGGCACAGTGCA
CCGTGACATTCAGCAGTCGCCGGCCCAAACAGCAGCTGTGGAGAGGGAAA
ATGGCGGAGAGAATGTGAATCAAGGCGCTGACGAGGATACAACGCATGCA
GAGGGCGAGATGGCCGATAGGAACAGGTGAGCGGATGTGCTCCGTCCCCT
GTTTGGGGGGAAATTGGACACTTGAGAGCAATCCATTCCATCTGATCTGA
ATCCATTTTCATTGGCGTCCATCAGATGTAGCGCTAGGAATGAAGAGTCT
ATGAGTGCAAGGAAGTCGAAGTTGAGCAAAAGCAATGATGCCAGGAGTAT
CGGCAGCGAAACACTCGGAAATGGCGAAAGCGGAGGGCATGGGAGGCTTG
AGCGGTCCATCAATGATAACTGTATGAAATCTGATTGA
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Coding sequence (CDS) from alignment at CM002457.1:881150..882337-

>rna1534 ID=rna1534|Name=rna1534|organism=Nannochloropsis gaditana|type=CDS|length=2988bp|location=Sequence derived from alignment at CM002457.1:881150..882337- (Nannochloropsis gaditana)
ATGTAGCGCTAGGAATGAAGAGTCTATGAGTGCAAGGAAGTCGAAGTTGA
GCAAAAGCAATGATGCCAGGAGTATCGGCAGCGAAACACTCGGAAATGGC
GAAAGCGGAGGGCATGGGAGGCTTGAGCGGTCCATCAATGATAACTGTAT
GAAATCTGATTGATCTATGCTTCGAGCCAGTGCATACGTAGCAATCGATG
GAACTCGGCCGGCACAGAGTGCTGAGGCTAGTGCGTCGGATTTACGCCTG
ATACATCCCAACCAAGACTTACTGTCTTTACGAGAAATGGATGAGGGCCG
ATTGCTATTAAATCTTACGGCTGAGCTGCTTAAAAGTATGAATATGCAGC
AGACGTTGAGCGTATTCGAACGAGAAGCCCACCTACACCCCAACGGTCCC
ATACTTTCAGAGGAGGACGAGATCACCGCGGAGAAGGAGCGATTATCGTG
GTTCTCTTCTGTACGGGAAGAGGGTGCGCAGGTGCTCGGGCTCGACGCTC
ATGCAACCGGTCCTCTTCTCTTACAGCTCATGCGACGACACCAGCAACAC
GTGGTGAGCAGGCTTCATCAGGGCAGAGGGGAAGAAAAGGAAATGCTCGA
CGGCACAGTGCACCGTGACATTCAGCAGTCGCCGGCCCAAACAGCAGCTG
TGGAGAGGGAAAATGGCGGAGAGAATGTGAATCAAGGCGCTGACGAGGAT
ACAACGCATGCAGAGGGCGAGATGGCCGATAGGAACAGATGCCGTCCTCG
TCTCATGTATTTGCACAAAAACAGACGATTGTGCAGAGTAGCGACAAGAT
GGAGTTGAAAACGCCCTCACCACGACCACTTGACTCAATTCACGCCTCAG
AGGCGGCCTCGGTGCCTACTGATGTGCCTTCCGACGAACCTCAGGACGCG
GCGCGTCTCAAAGCCAACACAAGTGTTGACGTGATAGAGGTGAAGGGCCT
ATTGCGACAGGCGCTAGGTCAAGCCGGCATCTTGGACTACGTGATGATGT
AGCGCTAGGAATGAAGAGTCTATGAGTGCAAGGAAGTCGAAGTTGAGCAA
AAGCAATGATGCCAGGAGTATCGGCAGCGAAACACTCGGAAATGGCGAAA
GCGGAGGGCATGGGAGGCTTGAGCGGTCCATCAATGATAACTGTATGAAA
TCTGATTGATCTATGCTTCGAGCCAGTGCATACGTAGCAATCGATGGAAC
TCGGCCGGCACAGAGTGCTGAGGCTAGTGCGTCGGATTTACGCCTGATAC
ATCCCAACCAAGACTTACTGTCTTTACGAGAAATGGATGAGGGCCGATTG
CTATTAAATCTTACGGCTGAGCTGCTTAAAAGTATGAATATGCAGCAGAC
GTTGAGCGTATTCGAACGAGAAGCCCACCTACACCCCAACGGTCCCATAC
TTTCAGAGGAGGACGAGATCACCGCGGAGAAGGAGCGATTATCGTGGTTC
TCTTCTGTACGGGAAGAGGGTGCGCAGGTGCTCGGGCTCGACGCTCATGC
AACCGGTCCTCTTCTCTTACAGCTCATGCGACGACACCAGCAACACGTGG
TGAGCAGGCTTCATCAGGGCAGAGGGGAAGAAAAGGAAATGCTCGACGGC
ACAGTGCACCGTGACATTCAGCAGTCGCCGGCCCAAACAGCAGCTGTGGA
GAGGGAAAATGGCGGAGAGAATGTGAATCAAGGCGCTGACGAGGATACAA
CGCATGCAGAGGGCGAGATGGCCGATAGGAACAGATGCCGTCCTCGTCTC
ATGTATTTGCACAAAAACAGACGATTGTGCAGAGTAGCGACAAGATGGAG
TTGAAAACGCCCTCACCACGACCACTTGACTCAATTCACGCCTCAGAGGC
GGCCTCGGTGCCTACTGATGTGCCTTCCGACGAACCTCAGGACGCGGCGC
GTCTCAAAGCCAACACAAGTGTTGACGTGATAGAGGTGAAGGGCCTATTG
CGACAGGCGCTAGGTCAAGCCGGCATCTTGGACTACGTGATGATGTAGCG
CTAGGAATGAAGAGTCTATGAGTGCAAGGAAGTCGAAGTTGAGCAAAAGC
AATGATGCCAGGAGTATCGGCAGCGAAACACTCGGAAATGGCGAAAGCGG
AGGGCATGGGAGGCTTGAGCGGTCCATCAATGATAACTGTATGAAATCTG
ATTGATCTATGCTTCGAGCCAGTGCATACGTAGCAATCGATGGAACTCGG
CCGGCACAGAGTGCTGAGGCTAGTGCGTCGGATTTACGCCTGATACATCC
CAACCAAGACTTACTGTCTTTACGAGAAATGGATGAGGGCCGATTGCTAT
TAAATCTTACGGCTGAGCTGCTTAAAAGTATGAATATGCAGCAGACGTTG
AGCGTATTCGAACGAGAAGCCCACCTACACCCCAACGGTCCCATACTTTC
AGAGGAGGACGAGATCACCGCGGAGAAGGAGCGATTATCGTGGTTCTCTT
CTGTACGGGAAGAGGGTGCGCAGGTGCTCGGGCTCGACGCTCATGCAACC
GGTCCTCTTCTCTTACAGCTCATGCGACGACACCAGCAACACGTGGTGAG
CAGGCTTCATCAGGGCAGAGGGGAAGAAAAGGAAATGCTCGACGGCACAG
TGCACCGTGACATTCAGCAGTCGCCGGCCCAAACAGCAGCTGTGGAGAGG
GAAAATGGCGGAGAGAATGTGAATCAAGGCGCTGACGAGGATACAACGCA
TGCAGAGGGCGAGATGGCCGATAGGAACAGATGCCGTCCTCGTCTCATGT
ATTTGCACAAAAACAGACGATTGTGCAGAGTAGCGACAAGATGGAGTTGA
AAACGCCCTCACCACGACCACTTGACTCAATTCACGCCTCAGAGGCGGCC
TCGGTGCCTACTGATGTGCCTTCCGACGAACCTCAGGACGCGGCGCGTCT
CAAAGCCAACACAAGTGTTGACGTGATAGAGGTGAAGGGCCTATTGCGAC
AGGCGCTAGGTCAAGCCGGCATCTTGGACTACGTGATG
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Synonyms
Publications