rna1533, rna1533 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1533
Unique Name	rna1533
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1882
Alignment location	CM002457.1:879086..880232 -

Link to JBrowse

Properties


Property Name	Value
Product	C2 calcium-dependent membrane targeting
Orig transcript id	gnl\|cribi\|Naga_100007g38.6510.mrna
Orig protein id	gnl\|cribi\|Naga_100007g38.6510
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:879086..880232 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g38	gene1477	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1533	rna1533-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29183.1	cds1530	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:879086..880232-
coding sequence from alignment at CM002457.1:879086..880232-

mRNA sequence

>rna1533 ID=rna1533|Name=rna1533|organism=Nannochloropsis gaditana|type=mRNA|length=1882bp
AATACTCTTTTCTGGCCCACACAGGAGGGTTTGCGGTGTTTCATCGGTGC
AGGGGAAAAAAATCAAGCAAAGGTGGAGACGCGAGGCTCCTGGAGGACAG
CGCTCGCAGAAGAGCTCCATACACTCGTCCCCTCCCGCAGACAACTCCGA
GGGTGGCTGGTCGGATTGAAGCATACCGCCAGTAATATATCCTGAGGTGG
AAGCGTTTAAGACCTTGGGAGGAGATCAGTTGGAAGTAGTCCTTGCTCTG
GGACATGGAGCAGATAATTGCCTTTCTAGTGTCCGGAGGCAGGCAGACGG
CTCCTGCTGAGTGCCACGGCATTGGAGGGGGAGATGCGGATTTGGATTGG
GAAGACTGGGATCCCAAGACAGGATCGTTTGTGCACCACATGATTGCGGG
GAGTATTGCGGGCATCGCAGAACACACACTGATGTATCCGGTGGACACGA
TCAAGACCTTCATGCAGTGTCAAGAGTGCAGCTTGACAGCCAATTGCCTG
AAGCAGCGGACAGTGGTGGCAGCTGCGGCGGCTGTCAGCGGAAGAGAAGG
GCTAGGAGAAGCGGCGGCGCGAGGGGCGTCGGTAGTGGAAGGCAGCGTAG
GCCTGACTTCATTTGAGGCGGCCTTTCGGTTGGTCCAGAAAGAGGGAACC
CTCCGGCTATGGCGGGGGGTGAGCACCATGCTCTCTGCATGCGTGCCAGC
CCACGCCGCGTATTTCAGCGCGCTTGAGTCCTGCAAGGAGCGTTTTGGTG
TGAATGGGCGCGAGCACAACGTAATGGGGGCGGCTGCTGCGGGGGCTGTG
GCCACCCTGTTTCACGATTCGATCATGACGCCAATGGACGTGATCAAGCA
GAGGCTGCAGCTGGGGTACTATAAAGGGCTCGCACACTGTGCTGTGTCCA
TTGTCCGCCAAGAAGGCGTCCGAGCATTTTACCTGAGCCTGCCCGTGACC
CTCTTCATGAATTTGCCCTACGGTGGCGTGATGGTTGCAGCTAACGAGAG
CATCAAACGCTTGCTCAAGCCAGCGGGAGACTATACTACCGGGACCTACT
TGCTCGCGGGTTCAGGCGCCGGGGCTTTGGCAGCGGCTGCCACGACACCC
TTGGATCTGATAAAAACGCGGCTCCAAACGCAAGTGACCATCCAAACGAC
GCGCTCGACAGGCCACGCCCCCCACGGGAGGCCTCCGGGGGCCGGCGAGG
TAGGACGCGGTAATGGTGCTCTACACACAGTCTCGCCTGGCTTCCATCGA
CCGACGTCGGCCTCCATGTCCCCCCTGGCTGCCGCTCACGAAGCGATGAG
TCCCGCAGGCTCCAGGGTCAGCCCCTCTGTGCCCCCCTCCCTCCCTCCTG
TCCCTCCTTTGCGAAGCCACGTGACCTCCTCCTCGGACGGGGGCTGTCGT
CGTGCAGAGCACACACGCTTACGATACAAAGGTATCATGGACGCAGCCAA
GCAGATACATGCGGCGGAAGGGGCGATGGGCTTCTTCCGAGGAATGGTAC
CACGGCTCCTGGTGCACACTCCATCCGTGGCGATTAGCTGGACCACGTAC
GAGACGGTTAAGGACATGTTAAGTATGGGGTATTTTTCAACCGGTACCCC
CCCCTCGCCCCCCTCAGTCCCGCCAGAAACGGGATAGTGGCCAGTACAAA
AGAAAGGGGAAAGACGAAAAAGGGAGGGGTAATGTCGCCTCTCCCAAGAT
GCGAACAAGACCATGTCCAGGTGAATATACTGGGGTGGTCATGAATCATG
AGAACAAAAGATGCAAAGAATGAAGGATCACGTCTGACTGCAATGAAGAA
CTGATGCATGGCCGATCGGGAGGTTCTGTGCACCTGCTCAGGGCGGACTG
CAAGGTGCTCGTTCACACCAATATTGAGGACT

protein sequence of rna1533

>rna1533-protein ID=rna1533-protein|Name=rna1533|organism=Nannochloropsis gaditana|type=polypeptide|length=298bp
MLRRIALGLSGVAVLLSVLNCDAGNPRSRRVQFDSKAQTLQDIEDWKEVV
DPDTCPVKQYSVALTLTAVTLADGLSCFSAEGGVSPFVQFEMGGKTIRSR
TEEDQQFPVYLETFQLGCQDIQEPLVISVVNSQTGQTCFSNTVRHWSYGR
TGVYTDTQPALSENARSGGTGLIKDTQQSYSYVLKTGPSTMDLTINALPG
PQETASKWNVHTPADIFGIVFGMMIFVGVVGYFVWKIRNSASGPAPAPAP
PSAPEALAMSSHGTENRKKDQKTGKSHTVGEIRLFGWDDQERENQDGL

mRNA from alignment at CM002457.1:879086..880232-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1533 ID=rna1533|Name=rna1533|organism=Nannochloropsis gaditana|type=mRNA|length=1147bp|location=Sequence derived from alignment at CM002457.1:879086..880232- (Nannochloropsis gaditana)
ATGCTGAGACGGATAGCTTTGGGTTTGTCAGGAGTTGCGGTATTGCTATC
GGTGTTAAATTGCGATGCCGGCAACCCAAGGGTGAGTAGAATTACTTCTA
CGCGTGAAACAAGCGTTATGCTGCCTGCACGCTCAAACCACATTTCTCAG
CCAATATTCTTATTTAATCGCTTATATTGCTATGTTCAAGGCTCGAGAAC
ATTGTACTATTCATTATGTCTCAAATCAGCACATCCCTTGTCTTTTCCCG
TTTCAGAGCCGGCGGGTCCAGTTCGATTCGAAAGCCCAGACGTTGCAAGA
CATTGAAGATTGGAAAGAAGTTGTTGATCCTGATACATGCCCTGTGAAGC
AGTACTCAGTCGCGTTGACGCTAACAGCAGTAACTTTGGCCGATGGTCTT
TCGTGTTTTAGTGCTGAGGGCGGCGTCAGTCCATTTGTACAGTTTGAAAT
GGGAGGGAAGACTATACGCAGCAGAACCGAGGAAGACCAACAATTTCCTG
TGTATCTTGAAACATTCCAGTTGGGTTGCCAAGACATTCAAGAGCCTTTA
GTCATTTCTGTGGTGAATTCTCAAACTGGTCAGACATGCTTCTCGAATAC
GGTCAGGCACTGGTCCTACGGCCGTACAGGCGTTTACACAGATACACAGC
CCGCACTCAGTGAAAATGCTCGCTCGGGTGGTACTGGTCTCATCAAAGAC
ACGCAGCAGAGCTATTCGTACGTGCTTAAGACGGGCCCCAGTACCATGGA
TTTGACCATTAATGCCCTTCCGGGTCCCCAAGAGACAGCTTCCAAATGGA
ACGTCCACACCCCCGCGGATATCTTTGGAATCGTCTTCGGCATGATGATC
TTCGTTGGTGTTGTGGGTTATTTTGTGTGGAAAATTCGCAACTCCGCCTC
CGGACCTGCACCTGCTCCTGCGCCTCCCTCTGCGCCCGAAGCTCTGGCAA
TGTCCTCCCACGGGACCGAAAACCGGAAAAGTAAGAAGATGACCGAGCCT
GCCGCGGATTTGGCAGCCGCATAAGCAACAACATGTGCACAGAATCTGCC
GTGAGAGGACCAGAAGACGGGAAAGTCGCACACGGTCGGCGAGATACGAT
TGTTTGGCTGGGATGACCAGGAGCGAGAGAATCAAGATGGATTGTAG

Coding sequence (CDS) from alignment at CM002457.1:879086..880232-

>rna1533 ID=rna1533|Name=rna1533|organism=Nannochloropsis gaditana|type=CDS|length=2691bp|location=Sequence derived from alignment at CM002457.1:879086..880232- (Nannochloropsis gaditana)
AGGACCAGAAGACGGGAAAGTCGCACACGGTCGGCGAGATACGATTGTTT
GGCTGGGATGACCAGGAGCGAGAGAATCAAGATGGATTGTAGAGCCGGCG
GGTCCAGTTCGATTCGAAAGCCCAGACGTTGCAAGACATTGAAGATTGGA
AAGAAGTTGTTGATCCTGATACATGCCCTGTGAAGCAGTACTCAGTCGCG
TTGACGCTAACAGCAGTAACTTTGGCCGATGGTCTTTCGTGTTTTAGTGC
TGAGGGCGGCGTCAGTCCATTTGTACAGTTTGAAATGGGAGGGAAGACTA
TACGCAGCAGAACCGAGGAAGACCAACAATTTCCTGTGTATCTTGAAACA
TTCCAGTTGGGTTGCCAAGACATTCAAGAGCCTTTAGTCATTTCTGTGGT
GAATTCTCAAACTGGTCAGACATGCTTCTCGAATACGGTCAGGCACTGGT
CCTACGGCCGTACAGGCGTTTACACAGATACACAGCCCGCACTCAGTGAA
AATGCTCGCTCGGGTGGTACTGGTCTCATCAAAGACACGCAGCAGAGCTA
TTCGTACGTGCTTAAGACGGGCCCCAGTACCATGGATTTGACCATTAATG
CCCTTCCGGGTCCCCAAGAGACAGCTTCCAAATGGAACGTCCACACCCCC
GCGGATATCTTTGGAATCGTCTTCGGCATGATGATCTTCGTTGGTGTTGT
GGGTTATTTTGTGTGGAAAATTCGCAACTCCGCCTCCGGACCTGCACCTG
CTCCTGCGCCTCCCTCTGCGCCCGAAGCTCTGGCAATGTCCTCCCACGGG
ACCGAAAACCGGAAAAATGCTGAGACGGATAGCTTTGGGTTTGTCAGGAG
TTGCGGTATTGCTATCGGTGTTAAATTGCGATGCCGGCAACCCAAGGAGG
ACCAGAAGACGGGAAAGTCGCACACGGTCGGCGAGATACGATTGTTTGGC
TGGGATGACCAGGAGCGAGAGAATCAAGATGGATTGTAGAGCCGGCGGGT
CCAGTTCGATTCGAAAGCCCAGACGTTGCAAGACATTGAAGATTGGAAAG
AAGTTGTTGATCCTGATACATGCCCTGTGAAGCAGTACTCAGTCGCGTTG
ACGCTAACAGCAGTAACTTTGGCCGATGGTCTTTCGTGTTTTAGTGCTGA
GGGCGGCGTCAGTCCATTTGTACAGTTTGAAATGGGAGGGAAGACTATAC
GCAGCAGAACCGAGGAAGACCAACAATTTCCTGTGTATCTTGAAACATTC
CAGTTGGGTTGCCAAGACATTCAAGAGCCTTTAGTCATTTCTGTGGTGAA
TTCTCAAACTGGTCAGACATGCTTCTCGAATACGGTCAGGCACTGGTCCT
ACGGCCGTACAGGCGTTTACACAGATACACAGCCCGCACTCAGTGAAAAT
GCTCGCTCGGGTGGTACTGGTCTCATCAAAGACACGCAGCAGAGCTATTC
GTACGTGCTTAAGACGGGCCCCAGTACCATGGATTTGACCATTAATGCCC
TTCCGGGTCCCCAAGAGACAGCTTCCAAATGGAACGTCCACACCCCCGCG
GATATCTTTGGAATCGTCTTCGGCATGATGATCTTCGTTGGTGTTGTGGG
TTATTTTGTGTGGAAAATTCGCAACTCCGCCTCCGGACCTGCACCTGCTC
CTGCGCCTCCCTCTGCGCCCGAAGCTCTGGCAATGTCCTCCCACGGGACC
GAAAACCGGAAAAATGCTGAGACGGATAGCTTTGGGTTTGTCAGGAGTTG
CGGTATTGCTATCGGTGTTAAATTGCGATGCCGGCAACCCAAGGAGGACC
AGAAGACGGGAAAGTCGCACACGGTCGGCGAGATACGATTGTTTGGCTGG
GATGACCAGGAGCGAGAGAATCAAGATGGATTGTAGAGCCGGCGGGTCCA
GTTCGATTCGAAAGCCCAGACGTTGCAAGACATTGAAGATTGGAAAGAAG
TTGTTGATCCTGATACATGCCCTGTGAAGCAGTACTCAGTCGCGTTGACG
CTAACAGCAGTAACTTTGGCCGATGGTCTTTCGTGTTTTAGTGCTGAGGG
CGGCGTCAGTCCATTTGTACAGTTTGAAATGGGAGGGAAGACTATACGCA
GCAGAACCGAGGAAGACCAACAATTTCCTGTGTATCTTGAAACATTCCAG
TTGGGTTGCCAAGACATTCAAGAGCCTTTAGTCATTTCTGTGGTGAATTC
TCAAACTGGTCAGACATGCTTCTCGAATACGGTCAGGCACTGGTCCTACG
GCCGTACAGGCGTTTACACAGATACACAGCCCGCACTCAGTGAAAATGCT
CGCTCGGGTGGTACTGGTCTCATCAAAGACACGCAGCAGAGCTATTCGTA
CGTGCTTAAGACGGGCCCCAGTACCATGGATTTGACCATTAATGCCCTTC
CGGGTCCCCAAGAGACAGCTTCCAAATGGAACGTCCACACCCCCGCGGAT
ATCTTTGGAATCGTCTTCGGCATGATGATCTTCGTTGGTGTTGTGGGTTA
TTTTGTGTGGAAAATTCGCAACTCCGCCTCCGGACCTGCACCTGCTCCTG
CGCCTCCCTCTGCGCCCGAAGCTCTGGCAATGTCCTCCCACGGGACCGAA
AACCGGAAAAATGCTGAGACGGATAGCTTTGGGTTTGTCAGGAGTTGCGG
TATTGCTATCGGTGTTAAATTGCGATGCCGGCAACCCAAGG

Synonyms

Publications