rna1532, rna1532 (mRNA) Nannochloropsis gaditana

Overview
Namerna1532
Unique Namerna1532
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length981
Alignment locationCM002457.1:876785..878829 +

Link to JBrowse

Properties
Property NameValue
Productmitoferrin-like protein
Orig transcript idgnl|cribi|Naga_100007g40.6531.mrna
Orig protein idgnl|cribi|Naga_100007g40.6531
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:876785..878829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g40gene1476Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1532rna1532-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29204.1cds1529Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1532 ID=rna1532|Name=rna1532|organism=Nannochloropsis gaditana|type=mRNA|length=981bp
AAGCGAGCCTCCGACATAGCAGAGCCTGTTAGTATTCTTCACACTATTTA
GCGACGTATGAATTGCCTTTCTGTCAACTTTACCTCTCATGATAGAGACA
GTCAGATGAGAGGCTTGCTTCCGCGTCGAGATGGCCGCTGAGGAGCGCCA
ACGATTATCATCTATTCTTTCCGCATTAACCCCTCAAAACAGACTTAAGC
CCGTCTTCCTTGCGATTCTCATCGACCTACAACGACGCAAGTAATGGACT
TTGGACTCAAGGGACGTGAGCTTTTGCAAGACTTAAAACGAAGTGATTGG
TTGCCTTTGTACAATGAAGATGCCGTGAGCCGCTGCTTGCAAGAGTGTCA
AGGGCATATGGCCCAAATCCGGCCAGCGTTAGCACAAGAGATGACCGAAG
TGCCGCCCGAATACTTAGTAGCGCTCACGGTGCACCTGCAACACATTCTT
CGGAACAAACGATGCTTACTGGCTTACATGCAGTATCGCCTTGACAAGGT
TCGGGACCTGCGTTGGGAAACAGGGGGTGCCATCATCCCAACGCGCTTAC
AACGGAAGTTATCCGCAAAGGAAAGCGAGTTCTTTGCTTCTTACGACAAG
ATTCTTTCTGACTACATGGGCAACTACCCTTTGCTTGACCTTACTGGCTC
GACCTTGCCTCCGAAGGAAATATGCATTGAAGTTCGCGTGTTGGCCGATT
GCGGGGAAATCATGACTGATCAGGGCCCTGTTAATTTGGAGAGAGGTACA
AATCATTTTTTGCGGCGCGCTGATGTCGAAGGCCTTATTCGACAGGGCTT
CCTGCTTCATATAGCCCCGTCGGCAAGGCAAGGCTCTTCCTGAATAAAAC
TGTGTTGACAGACCAGTAAATATCGCCTTCGCGAAGCCTGCAATTGAAAG
CTGAAATGTAGATACTGGAAATTTCGGAAGACAATCATAACAACTACAAT
AAACGAAAAGATGTAATTGGCGCAACAAATG
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protein sequence of rna1532

>rna1532-protein ID=rna1532-protein|Name=rna1532|organism=Nannochloropsis gaditana|type=polypeptide|length=460bp
MEQIIAFLVSGGRQTAPAECHGIGGGDADLDWEDWDPKTGSFVHHMIAGS
IAGIAEHTLMYPVDTIKTFMQCQECSLTANCLKQRTVVAAAAAVSGREGL
GEAAARGASVVEGSVGLTSFEAAFRLVQKEGTLRLWRGVSTMLSACVPAH
AAYFSALESCKERFGVNGREHNVMGAAAAGAVATLFHDSIMTPMDVIKQR
LQLGYYKGLAHCAVSIVRQEGVRAFYLSLPVTLFMNLPYGGVMVAANESI
KRLLKPAGDYTTGTYLLAGSGAGALAAAATTPLDLIKTRLQTQVTIQTTR
STGHAPHGRPPGAGEVGRGNGALHTVSPGFHRPTSASMSPLAAAHEAMSP
AGSRVSPSVPPSLPPVPPLRSHVTSSSDGGCRRAEHTRLRYKGIMDAAKQ
IHAAEGAMGFFRGMVPRLLVHTPSVAISWTTYETVKDMLSMGYFSTGTPP
SPPSVPPETG
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mRNA from alignment at CM002457.1:876785..878829+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1532 ID=rna1532|Name=rna1532|organism=Nannochloropsis gaditana|type=mRNA|length=2045bp|location=Sequence derived from alignment at CM002457.1:876785..878829+ (Nannochloropsis gaditana)
AATACTCTTTTCTGGCCCACACAGGAGGGTTTGCGGTGTTTCATCGGTgc
aggggaaaaaaatcaagCAAAGGTGGAGACGCGAGGCTCCTGGAGGACAG
CGCTCGCAGAAGAGCTCCATACActcgtcccctcccgcaGACAACTCCGA
GGGTGGCTGGTCGGATTGAAGCATACCGCCAGGTAATGCCTTTTACATCG
TTCTTTGTTAAAAATGTGCCGCTGTGATGCAGTCACTTAGAATTTtgcgg
aggaaaaagcgggggaggggggaatggataTTTGCTTCCTTCTGGGTACA
TCTCTCGACATCACTCTCACACGAGCATGCACAAATTTTGAACAGTAATA
TATCCTGAGGTGGAAGCGTTTAAGACCTTGGGAGGAGATCAGTTGGAAGT
AGTCCTTGCTCTGGGACATGGAGCAGATAATTGCCTTTCTAGTGTCCGGA
GGCAGGCAGACGGCTCCTGCTGAGTGCCACGGcattggagggggagatgc
gGATTTGGATTGGGAAGACTGGGATCCCAAGACAGGATCGTTTGTGCACC
ACATGATTGCGGGGAGTATTGCGGGCATCGCAGAACACACACTGATGTAT
CCGGTGGACACGATCAAGACCTTCATGCAGTGTCAAGAGTGCAGCTTGAC
AGCCAATTGCCTGAAGCAGCGGACAGTGGTGGCAGCTGCGGCGGCTGTCa
gcggaagagaagggcTAGGAGAAGCGGCGGCGCGAGGGGCGTCGGTAGTG
GAAGGCAGCGTAGGCCTGACTTCATTTGAGGCGGCCTTTCGGTTGGTCCA
GAAAGAGGGAACCCTCCGGCTATGGCGGGGGGTGAGCACCATGCTCTCTG
CATGCGTGCCAGCCCACGCCGCGTATTTCAGCGCGCTTGAGTCCTGCAAG
GAGCGTTTTGGTGTGAATGGGCGCGAGCACAACGTAATGGGGGCGGCTGC
TGCGGGGGCTGTGGCCACCCTGTTTCACGATTCGATCATGACGCCAATGG
ACGTGATCAAGCAGAGGCTGCAGCTGGGGTACTATAAAGGGCTCGCACAC
TGTGCTGTGTCCATTGTCCGCCAAGAAGGCGTCCGAGCATTTTACCTGAG
CCTGCCCGTGACCCTCTTCATGAATTTGCCCTACGGTGGCGTGATGGTTG
CAGCTAACGAGAGCATCAAACGCTTGCTCAAGCCAGCGGGAGACTATACT
ACCGGGACCTACTTGCTCGCGGGTTCAGGCGCCGGGGCTTTGGCAGCGGC
TGCCACGACACCCTTGGATCTGATAAAAACGCGGCTCCAAACGCAAGTGA
CCATCCAAACGACGCGCTCGACAGGCCACGCCCCCCACGGGAGGCCTCCG
GGGGCCGGCGAGGTAGGACGCGGTAATGGTGCTCTACACACAGTCTCGCC
TGGCTTCCATCGACCGACGTcggcctccatgtccccccTGGCTGCCGCTC
ACGAAGCGATGAGTCCCGCAGGCTCCAGGGTCAGCCCCTctgtgcccccc
tccctccctcctgtccctcctttgcgAAGCCAcgtgacctcctcctcgga
cggGGGCTGTCGTCGTGCAGAGCACACACGCTTACGATACAAAGGTATCA
TGGACGCAGCCAAGCAGATACATGCGGCGGAAGGGGCGATGGGCTTCTTC
CGAGGAATGGTACCACGGCTCCTGGTGCACACTCCATCCGTGGCGATTAG
CTGGACCACGTACGAGACGGTTAAGGACATGTTAAGTATGGGGTATTTTT
CAACCGGtacccccccctcgcccccctcagTCCCGCCAGAAACGGGATAG
TGGCCAGTacaaaagaaaggggaaagacgaaaaagggaggggtaaTGTCG
CCTCTCCCAAGATGCGAACAAGACCATGTCCAGGTGAATATACTGGGGTG
GTCATGAATCATGAGAACAAAAGATGCAAAGAATGAAGGATCACGTCTGA
CTGCAATGAAGAACTGATGCATGGCCGATCGGGAGGTTCTGTGCACCTGC
TCAGGGCGGACTGCAAGGTGCTCGTTCACACCAATATTGAGGACT
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Coding sequence (CDS) from alignment at CM002457.1:876785..878829+

>rna1532 ID=rna1532|Name=rna1532|organism=Nannochloropsis gaditana|type=CDS|length=1383bp|location=Sequence derived from alignment at CM002457.1:876785..878829+ (Nannochloropsis gaditana)
ATGGAGCAGATAATTGCCTTTCTAGTGTCCGGAGGCAGGCAGACGGCTCC
TGCTGAGTGCCACGGcattggagggggagatgcgGATTTGGATTGGGAAG
ACTGGGATCCCAAGACAGGATCGTTTGTGCACCACATGATTGCGGGGAGT
ATTGCGGGCATCGCAGAACACACACTGATGTATCCGGTGGACACGATCAA
GACCTTCATGCAGTGTCAAGAGTGCAGCTTGACAGCCAATTGCCTGAAGC
AGCGGACAGTGGTGGCAGCTGCGGCGGCTGTCagcggaagagaagggcTA
GGAGAAGCGGCGGCGCGAGGGGCGTCGGTAGTGGAAGGCAGCGTAGGCCT
GACTTCATTTGAGGCGGCCTTTCGGTTGGTCCAGAAAGAGGGAACCCTCC
GGCTATGGCGGGGGGTGAGCACCATGCTCTCTGCATGCGTGCCAGCCCAC
GCCGCGTATTTCAGCGCGCTTGAGTCCTGCAAGGAGCGTTTTGGTGTGAA
TGGGCGCGAGCACAACGTAATGGGGGCGGCTGCTGCGGGGGCTGTGGCCA
CCCTGTTTCACGATTCGATCATGACGCCAATGGACGTGATCAAGCAGAGG
CTGCAGCTGGGGTACTATAAAGGGCTCGCACACTGTGCTGTGTCCATTGT
CCGCCAAGAAGGCGTCCGAGCATTTTACCTGAGCCTGCCCGTGACCCTCT
TCATGAATTTGCCCTACGGTGGCGTGATGGTTGCAGCTAACGAGAGCATC
AAACGCTTGCTCAAGCCAGCGGGAGACTATACTACCGGGACCTACTTGCT
CGCGGGTTCAGGCGCCGGGGCTTTGGCAGCGGCTGCCACGACACCCTTGG
ATCTGATAAAAACGCGGCTCCAAACGCAAGTGACCATCCAAACGACGCGC
TCGACAGGCCACGCCCCCCACGGGAGGCCTCCGGGGGCCGGCGAGGTAGG
ACGCGGTAATGGTGCTCTACACACAGTCTCGCCTGGCTTCCATCGACCGA
CGTcggcctccatgtccccccTGGCTGCCGCTCACGAAGCGATGAGTCCC
GCAGGCTCCAGGGTCAGCCCCTctgtgcccccctccctccctcctgtccc
tcctttgcgAAGCCAcgtgacctcctcctcggacggGGGCTGTCGTCGTG
CAGAGCACACACGCTTACGATACAAAGGTATCATGGACGCAGCCAAGCAG
ATACATGCGGCGGAAGGGGCGATGGGCTTCTTCCGAGGAATGGTACCACG
GCTCCTGGTGCACACTCCATCCGTGGCGATTAGCTGGACCACGTACGAGA
CGGTTAAGGACATGTTAAGTATGGGGTATTTTTCAACCGGtacccccccc
tcgcccccctcagTCCCGCCAGAAACGGGATAG
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Synonyms
Publications