rna1525, rna1525 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1525
Unique Name	rna1525
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1859
Alignment location	CM002457.1:851767..854248 -

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Properties


Property Name	Value
Product	Protein kinase, ATP binding site
Orig transcript id	gnl\|cribi\|Naga_100007g50.6526.mrna
Orig protein id	gnl\|cribi\|Naga_100007g50.6526
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:851767..854248 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g50	gene1470	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29199.1	cds1522	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1525	rna1525-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:851767..854248-
coding sequence from alignment at CM002457.1:851767..854248-

mRNA sequence

>rna1525 ID=rna1525|Name=rna1525|organism=Nannochloropsis gaditana|type=mRNA|length=1859bp
GGGGACGTTGGTGTAAGTAGACTCTGGGGCCTTCCGTCGCGGTCAGACTC
GCCGCAGCGCGATCGAAAGAAAAGAGTAACGTGGTAGAGGCGTCATCAAC
GTTTGTAAATTTTTGACGGCCACGTATGAGAAAGTGCTGAGAAACGAGAA
TACTGGGCGCCTGAAACCGCTTTTTTGTTTTTTTCAGTGGCGGCGCCGCC
CTTTTTCAAGTCGTAATGTTTCGAAGGGTAATCATGAAATAGGCTGGCCG
ACACCACAAGTCATAAGAGATTACCATGGATTTGGTCCCAAAAGGCCTTT
ATCTTATGATATATTATGCCAATGTCTCTGCTTATGGACCTACTCAAAAT
CTCTTCGTTTCTGTCTCCAACGCTCAGGCCCCGAATTGGGACGAGCAGGG
TAAGAGGAAGTACCAACTTCCTTTGCAGAGCTTGCCCTTATCCTACCATC
TCCGTCTGCTGCGATCATTAATCAAGCGTGTGGCCCTGGTCTCTAATAGG
TTTCATCATGCTTTTGGCGCCCGTGCTCGTACTGTTGATGAGCAGCACTC
ATGCTTTTACTGGCAGGCCCCGAGACATAAGCCCGGCCTACCGCACCACC
ACACGGATGCGAGGATCTATCGAAGAACTCTACAGCGGTGAACCCCTCGA
TCCTAACAGGCGGAAACTCCGTCTTGCTTTTCTATCCACCTCACGTCCCA
AGCAACCGCCCAAGACCGAGAAAGAGCGCCAGCTGGACGAGAAGGTCTGG
GGTCGATGGCGCCTTGAGGAGGAATCCATCGACCGGCCACCGGCGGCTGA
CTTGGCTAAGTACGGGAAGAAACTCAAACCTACATATTCGAGATTTGAGG
AGGACTTATTTCTGGACATGTACAATGGCTTGATGCTTACAAAGGAGGAC
ACGTGCGCCTTCGGAATGGGCTGGCAGTGGACGAACTTGAAGGATGTTTA
TTCCGCGCCCATGATCCGGTTTCGAATCAACCGAAAAGAGGTAGGAATCG
ACTTCGACGAGTATGAGAGCGTGGATCACATGCCGTCGGTCTCTTTTTAC
TCAGGGACCTTCAAGGACGGCTCCATGGACGTTATCGAGGGGACAATCCA
GCGGAACAGGGACGCAGCCCCGCCCGAGGACGGATCCGCGCCCGTGGTCG
TCACGGTCGGCACATTCAGGATGGTTAAAGTCGCATCCCTTGTCTTGTAG
ATCAACTCAACTCTTAATATGTGAGGAAGCGATTGAGCGGAGAACTTGTA
GAGTGCAAAAAGGTGTGCTGGTAATACGTTTGTGCCAGGGACAGAAGGCT
GGTAAGATAGCAGGGATGGCAGCCATGGCGGGAGAAGAAGCGGTGTACAT
AGGAAAAAAATGAAAGAATTGTGTTAGACATTAGTAATCTTAACTGAAAG
CGAACATGAAGCAAGGACCATAAGGATAAATGTTTGTAAAAGGAAGCGTA
GGTAATTATCTGTTTTGATGCTTGTTACGGCGGAAAAAGCTGTACTGAGA
TTTGAACAAAGACTGCAAAGGTTGCTGTCAACGGAGGCTTCGTAGACAAA
GGACGATGCGTTTGTAGAGAGAAAGCACCTAGAAGGGGGCGACGAGGTCC
GCGCCAGGCTGCTCTAGGGTCCATAAAACGTGGATTTTTGAGATATGTTC
AATACATTTAATAACGATAAAGTTCATGCTTACTAGCCACATGATTGCAC
AGATATTATATATCGCTCTCTTTTTCTTTAGATTTGATTTGACGGCACTT
CGAATGAAACCTGATCCCGCGTCGGGAGGTGACGAGGGTCACTAGACTCC
GTTTTTTTCATCGTTTCCTTGACTACGACTGACCTTTCCTTGTCCATACC
AGGTTCCGG

protein sequence of rna1525

>rna1525-protein ID=rna1525-protein|Name=rna1525|organism=Nannochloropsis gaditana|type=polypeptide|length=448bp
MPEGGDWPSCVEQFPLEKKIGQGAFATVYKAHCPAKANVAVAIKVMDLEN
INSSFEDIRQEVQMMRMSDHPNILRCYCSFVHECQLWLVMQMMEKGSCLH
VMTQAKRMGMGEGMREEWLAYILKESLQGLKYFHDQGQIHRDVKAGNILL
DGEGHVRLADFGVSGWLINSGDRRQTTKTFVGTPCWMAPEVMEQIDGYDY
KADIWSFGITALELAKGYAPYAHFAPMKVLIMTIQQEAPSLKSYPDDKSV
DGEPFSRGFREIVRLCLQKDPKKRPTCTTLLNHKYFGKRSKDSLVSELLA
KVETVGEQDVENTPRLPGTGPAYVSHDGAETLRAGAAGIARGEGGGKGEY
QDTVKAGKEERLADGSKKGPAAEEEFVRGTTWVFDDGSQVILRAEAQDGK
GAAEGSEGQKGTDGTKNRENKGGGDDDASFYDDFEKLTKGENFKDGDA

mRNA from alignment at CM002457.1:851767..854248-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1525 ID=rna1525|Name=rna1525|organism=Nannochloropsis gaditana|type=mRNA|length=2482bp|location=Sequence derived from alignment at CM002457.1:851767..854248- (Nannochloropsis gaditana)
ACGGACCGGAAGCGCAGCTAATTCGTCGTGTTGCTCTTCCTTATCAAAAG
GCTTGCCCTTGATTTTTTACGCGGTCCTTGTTTATTGCCTAATGCTTCCA
AACGTGTTCCACTACCACAGACGGAATTCGCAGAAGCACTGGTTTCATCT
ATCGTCAGTTACTGCGCGGTGTTATCACTTGGAAGTTTGGATTCTGTGGA
GTTATTTGGCCGAGGCAATACGCGCGGCTCCGGTCTGTCGTCATCAACGT
GAACACGGGACTAGGCAGCACGCGTGTCTTGATTTGAAGCTGCGACGAAA
GGCCTCGCACAAGAAGCTGTACACGGAAAGTACGCAGGAAATTGCGTGAC
TTATCAGCATCTGTAGGGGCAGTCGCCGGCGCAGTGTTCTAGCAAAGCAG
CAACCTGTAAAGATCAGCTGCTACAGATCTCTCGTTCATAAGTACACACA
GAAATCAGAACAGTATCCGAGAACTCAAGCGGCGGAAACCAATGTGCATC
TGGGTGTGTCTGTAAGATTCTTCCTCAAACATCTTGATTCGACAAGGCCA
CTTGAAGCGTCCCATTCGCGCTCTCGACCCCTTCATTGAGGGGTCCTTGG
ATTCAACGCAAAGTTTAAACCCGTTCGTCAGGAGAACTCCTCACTTTTCA
AGATGCCGGAAGGAGGTGACTGGCCTAGTTGCGTTGAGCAATTTCCTCTG
GAAAAGAAAATTGGGCAAGGAGCCTTCGCCACAGTGTACAAAGCGCATTG
CCCGGCCAAGGCGAACGTTGCTGTCGCCATCAAGGTCATGGACTTGGAGA
ATATCAACTCCTCCTTCGAGGACATCCGCCAAGAGGTGCAAATGATGCGT
ATGTCAGACCATCCGAACATTTTGCGCTGCTACTGTTCGTTCGTCCACGA
ATGTCAATTGTGGTTGGTGATGCAGATGATGGAGAAAGGGTCCTGCCTGC
ACGTGATGACCCAGGCGAAGCGCATGGGGATGGGGGAGGGAATGCGGGAA
GAATGGCTGGCCTACATTTTGAAAGAGTCTCTACAGGGTCTGAAATACTT
CCACGACCAAGGCCAGATCCACCGCGACGTGAAGGCCGGCAACATTTTGC
TGGACGGGGAGGGGCACGTGCGTCTCGCCGACTTTGGCGTCTCTGGCTGG
CTTATTAACTCGGGCGACCGCCGGCAGACGACCAAGACCTTTGTGGGTAC
CCCCTGCTGGATGGCTCCCGAGGTGATGGAGCAGATCGACGGCTACGACT
ACAAGGCAGACATCTGGTCCTTCGGCATCACCGCCCTCGAGCTCGCCAAG
GGGTACGCCCCGTACGCGCACTTTGCCCCCATGAAGGTACTGATCATGAC
GATCCAGCAGGAAGCGCCGTCGCTTAAGTCCTACCCGGATGACAAGTCCG
TGGATGGCGAGCCGTTTTCCCGGGGTTTTCGGGAGATCGTCCGCCTGTGC
CTGCAAAAGGACCCGAAGAAACGCCCGACGTGCACTACCTTACTGAACCA
CAAGTATTTCGGCAAGCGGTCCAAAGATTCACTGGTCTCTGAGCTTTTGG
CCAAGGTGGAGACGGTGGGGGAGCAGGACGTGGAGAACACGCCCCGCCTA
CCTGGCACGGGCCCCGCGTACGTCTCTCACGATGGGGCAGAGACGTTGCG
TGCGGGCGCGGCGGGCATCGCGAGAGGAGAGGGGGGGGGGAAAGGGGAAT
ATCAAGACACCGTCAAGGCAGGGAAGGAAGAGAGACTGGCAGATGGTTCA
AAGAAAGGGCCCGCGGCGGAGGAGGAATTCGTGCGAGGTACGACATGGGT
TTTCGATGATGGCTCTCAAGTGATTCTGCGGGCAGAAGCGCAGGACGGAA
AAGGTGCGGCGGAAGGTAGCGAGGGACAGAAAGGGACGGATGGAACGAAA
AATCGGGAAAATAAGGGAGGAGGGGACGATGATGCTAGCTTTTATGATGA
TTTTGAAAAGCTGACCAAAGGCGAAAATTTCAAAGACGGCGACGCTTAGA
GGCGTGGGATTTCGACACGAGGCGGGAGGGAGATAGGGGAAAGCGCTCTG
GAAGGAGATTGACAGGAAACTGTGCCATATCTGTGTCTTGCCCTTTCTCA
ACGTGCTTCGCTCGCTTTTCCCGTGGCACCTTCAATTGAAGGGGGGACCT
CTTGCTGTTTCTGAAGCTTGGACTTTGTGAATCATGGTACAACAAGGATT
AAAGACAGTGTGTGGTGAGGCGGCCTGAGGTAAAAGAGACCGGAACCTGG
TATGGACAAGGAAAGGTCAGTCGTAGTCAAGGAAACGATGAAAAAAACGG
AGTCTAGTGACCCTCGTCACCTCCCGACGCGGGATCAGGTTTCATTCGAA
GTGCCGTCAAATCAAATCTAAAGAAAAAGAGAGCGATATATAATATCTGT
GCAATCATGTGGCTAGTAAGCATGAACTTTATCGTTATTAAATGTATTGA
ACATATCTCAAAAATCCACGTTTTATGGACCC

Coding sequence (CDS) from alignment at CM002457.1:851767..854248-

>rna1525 ID=rna1525|Name=rna1525|organism=Nannochloropsis gaditana|type=CDS|length=1347bp|location=Sequence derived from alignment at CM002457.1:851767..854248- (Nannochloropsis gaditana)
ATGCCGGAAGGAGGTGACTGGCCTAGTTGCGTTGAGCAATTTCCTCTGGA
AAAGAAAATTGGGCAAGGAGCCTTCGCCACAGTGTACAAAGCGCATTGCC
CGGCCAAGGCGAACGTTGCTGTCGCCATCAAGGTCATGGACTTGGAGAAT
ATCAACTCCTCCTTCGAGGACATCCGCCAAGAGGTGCAAATGATGCGTAT
GTCAGACCATCCGAACATTTTGCGCTGCTACTGTTCGTTCGTCCACGAAT
GTCAATTGTGGTTGGTGATGCAGATGATGGAGAAAGGGTCCTGCCTGCAC
GTGATGACCCAGGCGAAGCGCATGGGGATGGGGGAGGGAATGCGGGAAGA
ATGGCTGGCCTACATTTTGAAAGAGTCTCTACAGGGTCTGAAATACTTCC
ACGACCAAGGCCAGATCCACCGCGACGTGAAGGCCGGCAACATTTTGCTG
GACGGGGAGGGGCACGTGCGTCTCGCCGACTTTGGCGTCTCTGGCTGGCT
TATTAACTCGGGCGACCGCCGGCAGACGACCAAGACCTTTGTGGGTACCC
CCTGCTGGATGGCTCCCGAGGTGATGGAGCAGATCGACGGCTACGACTAC
AAGGCAGACATCTGGTCCTTCGGCATCACCGCCCTCGAGCTCGCCAAGGG
GTACGCCCCGTACGCGCACTTTGCCCCCATGAAGGTACTGATCATGACGA
TCCAGCAGGAAGCGCCGTCGCTTAAGTCCTACCCGGATGACAAGTCCGTG
GATGGCGAGCCGTTTTCCCGGGGTTTTCGGGAGATCGTCCGCCTGTGCCT
GCAAAAGGACCCGAAGAAACGCCCGACGTGCACTACCTTACTGAACCACA
AGTATTTCGGCAAGCGGTCCAAAGATTCACTGGTCTCTGAGCTTTTGGCC
AAGGTGGAGACGGTGGGGGAGCAGGACGTGGAGAACACGCCCCGCCTACC
TGGCACGGGCCCCGCGTACGTCTCTCACGATGGGGCAGAGACGTTGCGTG
CGGGCGCGGCGGGCATCGCGAGAGGAGAGGGGGGGGGGAAAGGGGAATAT
CAAGACACCGTCAAGGCAGGGAAGGAAGAGAGACTGGCAGATGGTTCAAA
GAAAGGGCCCGCGGCGGAGGAGGAATTCGTGCGAGGTACGACATGGGTTT
TCGATGATGGCTCTCAAGTGATTCTGCGGGCAGAAGCGCAGGACGGAAAA
GGTGCGGCGGAAGGTAGCGAGGGACAGAAAGGGACGGATGGAACGAAAAA
TCGGGAAAATAAGGGAGGAGGGGACGATGATGCTAGCTTTTATGATGATT
TTGAAAAGCTGACCAAAGGCGAAAATTTCAAAGACGGCGACGCTTAG

Synonyms

Publications