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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100007g51.6542.mrna |
| Orig protein id | gnl|cribi|Naga_100007g51.6542 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:850151..852009 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1524 ID=rna1524|Name=rna1524|organism=Nannochloropsis gaditana|type=mRNA|length=6403bp
ATTATTATAATAATAGGCCCAAATTTTGTCGATGATGGAGACCAAGGTCC
GTGTTGGGGTGCGGGTGAGGCCGTTGCTGCCGAGCGAAAAGGCGGTGGGC
TCGGAGATGGTCATAAAATACCCTGGGACTAACAACACTCAGATCGGAAT
GGGTGAGCGGGCTTTTACCTACGATCACGTCTTTCGACCCGAGGTGGACC
AGTCTTCTCTTTATGGAATGTCAGTGAAGCCTATGCTGAAGCCGTTTCTG
GACGGATACAACGTGACGGTCATCGCGTACGGCCAGACCGGCAGCGGCAA
GACTTACACCATGGGGTCCGAGGTAGCTTACGCCGGAGGCGATCGTTGCA
ATCATGCCGGGAAAAGTGAAAGCTCTCCCGTAGGCTTAATTCCGCGTTTT
GTGGATGACCTTTTCGTGCATCTCGACGAAGAGCAACGCCAAAGATCTCA
GCAGCAGCAGGCGAGGAACGCTGTCGTGTCCGCCTCCTTTCTCGAGATCT
ATGGGGAAGACGTGTACGACCTGCTGGACGACTCAGCCGACGGCCGTGGC
CGACCATCGTTGCCCATTCGCGAAGATGCGAACGCGGGCGTGCTCGTGTC
AGGACTGAAGGATATGGTGGTGCATTCCCGCGACGAGGCCCTCCAGGTCT
TGCGGAAGGGGACTTTGAATAGGACGACCGCTGCCACGCTGATGAACGTC
GTCTCGAGTCGTTCTCATGCCGTTTTCACAGTAACGATGCAGCAGATCCT
GAAACCTGATAGTGGAAGCGGGGACAGGGAGGATCTGGGAGGCCTTAAGG
ATGGAGCCGAGGAAGGGGAAGAGGAGGGCCAAGTGGTCATGTCCAAATTG
ACCTTCGTGGATCTGGCGGGCAGCGAGCGGTTGAAACGGACGGGCGCCGA
GGGGGAGCGCCGGCGGGAGGGCATCCAGATCAATGCGGGGCTCCTGGCGC
TGGGCAGCGTCATCAACGCCTTGGCGGACGAGGAGCGTTTGGTAAAAGGG
AAGAAGGCGGTCCACGTGCCCTACCGGCAGTCCAAGCTGACACGCCTCCT
GCAGGACGCCCTGGGGGGGAACAGCCAGACCTTGTTCTTGGCTTGCGTCT
CCCCGGCAGCAATCAATGCCAGCGAGACCCTTTCCACGCTCTACTATGCC
AACCGGGCCCGCAACATCCGGAACAAGCCCGTCAAAAACACGGACTCGGC
CAAGGAGGAGCTGCGCTGCCTGCGACAGACAGCTCGTTTTCTGAAGGCGG
AGGTCGTCCGTCGTGTCTTCCTGGCCAATCCGGTGGACGAGGTGCCGGGC
GAGAGCGGGCAGGGAGGGACTGAAAAGCGCTGCACAAGCCCCGTCACTGC
CTCGAAGGCGCACACGTCGGATGTGGAACTGATGGAGCGGTCAGACGTGA
AGGCCTTCCTCCGCGCCTTGGGCAGCAGGTTGGACGCACACCTGCGGCGA
GTCGGCATCGAGGGTGTTGACGGGCCTGCCCTGCTCCTCAAGCCCTTCGC
CCCCGCCACCCCGGGAGCAAGCCGACACAGTGTCGAGCACGATACTTCGC
GTGCCCTTTCCAATTTCGCTCCCTCGGTCGCAGCGGCTGCCAATCGTAAG
GCATTGCCTGCGTGCGATAGTCCTCCACGTGCGTGCATCACCCGAGACAT
GGGAACTCACTTAGATTTCGATTCGGCAGGCACAGCAGCTGCGGCAGCAG
CTACAGCCGCGGCGAGCAAGGACGCTGAAAGGGAAGATGATGGGCCGCTT
TCTTTGCCGGCAGCTGCGTCAACCGCTGGGGGAACCTCGTCCATTTGTGC
CGAGGCCATTGAGGGAGATCCAGAGAAGGAGTTGATGATACTGAAAAAGC
TACAGGAGCTGCAACAGCACGAGGCGGCGATGGGGGCGGATGAGGAGCAT
GGAAGGGAGGCTCTAGCCACGGTGGAGGGAGAGCTGGAGCAGAAGGAGAG
TCTGTTGGAACAGCTTCGCCAAACGCTGCAGGGCTACCACGGCATGCGTG
GACGTTATGAGAGGTTGATGAAAGACGTGGAGGCACTAGAATTGGAAAAG
GAGGCTCTTCATTTTCAGCTTGAGCAAACTTTGGCGGCTGAGGAGACACA
GCAAGAGCGTCGAGAACGACAGGGTCAGAGAGGGGGCAACCCCGAGCAAG
ACCATAAGGCAGGTGGTGCTTCCGCGGCATCAGCTGCCACAGCCACAGCG
CTTCGGGAGAAACTTAAGGGGGTGGAGGCTCAGTTAGACAGGTTAAAGGT
GCAAAAAAAACAGCAGGACAATCTACAACGGCTGGCAGAGAGACAGAAGC
AGGAGCTTCTCACTTTGGAGGATAGTCTTAGCAAGCTGAAAAATGCGCGT
GCAGGACTCATTAAAAAACAAAGAGAGTCCGCAAAGCAGCACGAAGTTCT
GATTCAAGCAAAGCGCCGGGAAATGGAGGCACTACGAAAGGCGGACAGGA
CGCTGCAGAAAAAAATGGGCCGATTGCAACTCGAAAACAGAGGCGCGAAG
GTGCTACTGGATAGAAAAGAGAACTGCATTCGTACCCTTCGACAAAAGGC
GGTCACTGCCGAAACTCATGTATTGCGTCTTCTGCAGCTCCAGAATAGGA
ATCGAGAGAGCTTGCAGTACCGCCGAAGCACGGTAGCTCGCCGGGGGGCT
GCCTTTCAGAAGAAAGGAAAAATTGAACCTGTTTGTGATTCGAGAAATGG
CAAGGACGGTACTGGGATAGCAGGGGAGAAGGTTGACGCTGCTTATTTTT
TAATAGAGAAGGTCGTAGAGGAGCGACTCAGCGAGCTGGAGGCGCGGCGG
ATGCTTGAACTGAAAACTGAAGACTATGAAAAGCTGGTCCACGAGCTCCG
AAGCCAGGCACAGGTGCTCGAGTCACTAAGAGCTGAAGAGGACGGCGGTG
CCTCCGAGGAGAAGGAAAGCGGAAAGCTTGGTGAGACAATCCAGGAGGCG
GAGGCCAGGCTTGAGGGGCTTGACATGGAGATGGAGCTCTGCGCAGCAGC
CATAAGTGACTTCCAGGCTCGCTTTGACGCGCACGCTTTAAAAAGTGCTG
GTGGCAGTGGTGATAAAATGAATAGAGGAAAGAAGGCGTCCTCACTCCCT
TCTTCGTTGAAAGCCGGTGTAACTGAGGAAGCAGCGCTTAAAGCAGTCTC
CGAACTCGGTCCTGCGGAGACCAAGGTACTCTTGTCAGGTCTGATGGAGG
GCGTTGTGGAAGCCCGGGCAAAAGTATGGGAACTTGAAAGCGACATCCAA
AAGAAGGGCTGCGTGGAAGAGGAATTGCGTATAGACAGGGATAGTTTGAA
GCGCCGGCTGTCGGAGTCTGCCCGGGGTTTTGAGAAAAAGGTGATGGACC
TCCAGTGTCAGCACCAGCAGGACCTCATGACCTTGGTGAGGAGCGGAGTG
GGCGTTGGCTCTTTGAGTACATCCATGATGCCGGCTAGCGGACTTGGGAA
AAATGTAAATACCTGTAGAGGTGATTCGACCACATCCGACGATAGAGACA
ACGTAATTGTCAATGTGGAAGGCGTGCGCGACCAGAACGAATCAAGAGGC
GGAGAGGCCGCGGACGAGCAGGAGGAAGGAGGGGATTGCTATGACAAGGC
CGATCAGGTCATTAAACGGCAGCTTGAGGCTTTGGTAAATCAAAGCGACA
ATCTGGAAGATCAGTGTAAAACAGTGACGCGCGCTTTCGAAGAGGAGAAG
GCAAACCGGGTAGTACTCGAGCGCGAAGTTGAAACAGCGCGCAGGGAGGC
GCGCGAGCTTCGGGAGGCCCTTGAGGCATTACGGAGGGCGCAGGATCTAA
GCAAAGAGCAAAAGGAGGAAGGTGGCATCATGGAAGAGTTGCTATCTGCA
TGGGCGGAGCTGGGAGTGTCAGCCGAGCGACGTCGAAGCCTGCTCGACAA
GGTCTCAGAGGCCCCTTCCACAGTGTGTCACAAATTGCTCGAGGAGGCCC
GGAGCCAGCGCGCGGAGGTGACGGACCGGGTGGCCCAATTGAGTACCGAG
TTGGATATCATGTCCAGAATGTTGGGCATCGAGAGTCGTGGAAATGAGAT
GGAGGTGGACGGATCCGACGATGTCAGCAACGAAGCACAAACCGAAGATG
CGTTGATCACGCTCAGAGAAAAACTGGAAGCGCGCCATTCACACATCAAG
GCGATCCTGCAGAATCGTTTGCAAGAAGTTAGACGACTCACGCAAGAAGC
TGAACATTTGCAGCGCATCTTGGGAGGGCAATCAGGCGAGGCCCTGAAAG
AAAGGATGGTGCTTGGGAGTCTGCTGTCGGCCTCCGCAAATACCTATGAG
AGAACTTTTTCAGGAACAGGAGAAGAGCAAGATTCTTTTGACGTATCGAA
CGTGTTGAAAGAAGCGACAGAGAGGAGCCGGGCATCGGAATATGTAGCAC
TATCACTGAGCGAGAGTACACTGCACGACTGGGAGGGAGAGATCAAGGCT
TTGCGTCGGGCGCGCTCGGCGATGGTTGTGGAGTTGCAAGGTCTTCTCGA
ACAGGGTCACGGAGCCTCTTCCCTCATGAAATTGAGTGAGGAGGGACTGA
AAGAGATAATGCGGGCCACTCTTGAGCAAGTGCAGCAGGAGTCCTCGCGA
ACAACTACGTCGGACCCTTGCACCGCAACTTCAGGCGGCGAAGAGAGACC
AATATCCCGCCAGTGCAGCAGCACCATCACAATCGTGCCCGCAACGGTTT
CATGGGGTAATCCTACGCTGTGCAAGATGATCGAAATAATGACATCGGGC
GATGGAGGGGCCACAGTCGCTGGGCTCTGGGCCGCAGAGGAGCAGACCAC
ACCGCTTGCCGACGCCATTCCCCTAGCTCGCTTTTTGGTGCAAATGTTGG
TGAAATGCTGGAGCCGGCGGCGGGAGCTCCTTGTCCTCTGCTGGTGCGCT
GCAGATGGGCTCAACAACTACTTGATCGAAACCTCGTTGGGGCCCGTCAC
AACGGCCGTCATCAAGGCACTACCACAGATGCAGGGCGAGCAGGGAGAAA
GCCAGGATGGGGGTATGACGGCAGAGGAAGCCGAGATTTTCCTCAAGGGG
CTGGACGTCCTGCTTGCAGACGTGGCGAAGCAGACGTGCTCGGCAGCGGC
CCGGCTGCAAGAGCTTTGGCAGCTCTTGAGGATCCCAACTGAAAATCGAA
GGACCGATTTAATCCATTCGCAGCTTAACCCTCGAGATGTCACAGATGTG
GTAATAGGTGTGACGCCCGTCCCATTAAAAATCCAGCAAGACTTCGAGGC
TTTCACTGTAGACCAGGAACGGAGAGAGGAGCTGGCAAAGGCTTTCAAAC
GCCTGGAGGTGGATCTAGAGCGAATATCCGTCAGTGCGGATGGTCGACCT
GAGGTGGAGAAATGGATTGGGGATGCCATTGAGCGCATGGGCCGGCAGAT
TCATAGTTTGAAAGCGAAATTTGCAACATTGAGCATCCAGTGCCAAGAGA
TATGTTTGCTCCAAAAACGGCAGCGACGACAAGAAGGTATCTTGAGACTG
AATGATGAGATAATCAATCTAGAGGGCGAAGCTCGGCGCTTTGAAGCAGA
AGCCAGTGACAGCAACCGGCTGGTGGATCGCAAATCAAATTCCGCACGCT
TGCTGAAGGAAGAAAGGTTCAGGAAGGACAGTAAAGCCCGCTTTGCTAGA
CTGCTAGAGCGGCTGCGGCAGGAGTTAGAGGAATGGCAGGCCAAAGAGCG
CTCGCCGTTTGACCCCAGCTTACTCGGAGAGGACCTTCAACGTGCGTTGT
CCCATTCAATAGAGTTAGGAGGCCGTAACTGGGTAGAAGGGCGCACTGGG
CTCATGCACCTGCACACGAGCCAGCCGAAAAGCCGAAATTCTTCCCCCAA
TCAACTGTCCCCACCTCCAATTGTTGAGGACGAGGGAGCAGCTGCCCTTA
CCGATGAAATACCGCCACCGTCGATTCTGAATAATCGCGACCCTTTCGCC
CGTGTCTTGCCACCAGCTTCTGCTGAAAGCATAGATTCGGCAGCCATAGA
GCCAAACAGGTCAATTACTGTCTCTTTGCCCGCTGCACTCCCAATCAACA
CCAGGACAGCTACCGCCGGGGGCGGGCTATTGGGTATTAATCGCCTTACT
GGCGTTGGTGCCTCAGTAAGCGATTTGCTTGTTCGTGGAAAGCACATCCA
ACAATCAATTCCGAATCCTTTGGCTGAGCGGATTAGCCTCAAGAAGAATG
GGAAAGAAGGGCTTGAAATCAGCCGCAATCGCACCAGAAGTAGCACCACC
GATGAAACAACCACAATGGGTTATTCCACGAATGCTGCGAGCTGCAATAG
AGGAGGTGCAAAAAAGTAAGAAATTTGACATGAATATGAGAGATGGTACA
TATAGCTGTGCGCAACAAAAAAGTAAAAGAATGAAAATGACCGATGCACT
TGG back to topprotein sequence of rna1524 >rna1524-protein ID=rna1524-protein|Name=rna1524|organism=Nannochloropsis gaditana|type=polypeptide|length=230bp
MLLAPVLVLLMSSTHAFTGRPRDISPAYRTTTRMRGSIEELYSGEPLDPN
RRKLRLAFLSTSRPKQPPKTEKERQLDEKVWGRWRLEEESIDRPPAADLA
KYGKKLKPTYSRFEEDLFLDMYNGLMLTKEDTCAFGMGWQWTNLKDVYSA
PMIRFRINRKEVGIDFDEYESVDHMPSVSFYSGTFKDGSMDVIEGTIQRN
RDAAPPEDGSAPVVVTVGTFRMVKVASLVL back to topmRNA from alignment at CM002457.1:850151..852009+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1524 ID=rna1524|Name=rna1524|organism=Nannochloropsis gaditana|type=mRNA|length=1859bp|location=Sequence derived from alignment at CM002457.1:850151..852009+ (Nannochloropsis gaditana)
GGGGACGTTGGTGTAAGTAGACTCTGGGGCCTTCCGTCGCGGTCAGACTC
GCCGCAGCGCGATCGAAAGAAAAGAGTAACGTGGTAGAGGCGTCATCAAC
GTTTGTAAATTTTTGACGGCCACGTATGAGAAAGTGCTGAGAAACGAGAA
TACTGGGCGCCTGAAACCgcttttttgtttttttcagTGGCGGCGCCGCC
CTTTTTCAAGTCGTAATGTTTCGAAGGGTAATCATGAAATAGGCTGGCCG
ACACCACAAGTCATAAGAGATTACCATGGATTTGGTCCCAAAAGGCCTTT
ATCTTATGATATATTATGCCAATGTCTCTGCTTATGGACCTACTCAAAAT
CTCTTCGTTTCTGTCTCCAACGCTCAGGCCCCGAATTGGGACGAGCAGGG
TAAGAGGAAGTACCAACTTCCTTTGCAGAGCTTGCCCTTATCCTACCATC
TCCGTCTGCTGCGATCATTAATCAAGCGTGTGGCCCTGGTCTCTAATAGG
TTTCATCATGCTTTTGGCGCCCGTGCTCGTACTGTTGATGAGCAGCACTC
ATGCTTTTACTGGCAGGCCCCGAGACATAAGCCCGGCCTACCGCACCACC
ACACGGATGCGAGGATCTATCGAAGAACTCTACAGCGGTGAACCCCTCGA
TCCTAACAGGCGGAAACTCCGTCTTGCTTTTCTATCCACCTCACGTCCCA
AGCAACCGCCCAAGACCGAGAAAGAGCGCCAGCTGGACGAGAAGGTCTGG
GGTCGATGGCGCCTTGAGGAGGAATCCATCGACCGGCCACCGGCGGCTGA
CTTGGCTAAGTACGGGAAGAAACTCAAACCTACATATTCGAGATTTGAGG
AGGACTTATTTCTGGACATGTACAATGGCTTGATGCTTACAAAGGAGGAC
ACGTGCGCCTTCGGAATGGGCTGGCAGTGGACGAACTTGAAGGATGTTTA
TTCCGCGCCCATGATCCGGTTTCGAATCAACCGAAAAGAGGTAGGAATCG
ACTTCGACGAGTATGAGAGCGTGGATCACATGCCGTCGGTCTCTTTTTAC
TCAGGGACCTTCAAGGACGGCTCCATGGACGTTATCGAGGGGACAATCCA
GCGGAACAGGGACGCAGCCCCGCCCGAGGACGGATCCGCGCCCGTGGTCG
TCACGGTCGGCACATTCAGGATGGTTAAAGTCGCATCCCTTGTCTTGTAG
ATCAACTCAACTCTTAATATGTGAGGAAGCGATTGAGCGGAGAACTTGTA
GAGTGCAAAAAGGTGTGCTGGTAATACGTTTGTGCCAGGGACAGAAGGCT
GGTAAGATAGCAGGGATGGCAGCCAtggcgggagaagaagcggtgtACat
aggaaaaaaatgaaagaatTGTGTTAGACATTAGTAATCTTAACTGAAAG
CGAACATGAAGCAAGGACCATAAGGATAAATGTTTGTAAAAGGAAGCGTA
GGTAATTATCTGTTTTGATGCTTGTTACGGCGGAAAAAGCTGTACTGAGA
TTTGAACAAAGACTGCAAAGGTTGCTGTCAACGGAGGCTTCGTAGACAAA
GGACGATGCGTTTGTAGAGAGAAAGCACCTAGAAGGGGGCGACGAGGTCC
GCGCCAGGCTGCTCTAGGGTCCATAAAACGTGGATTTTTGAGATATGTTC
AATACATTTAATAACGATAAAGTTCATGCTTACTAGCCACATGATTGCAC
AGATATTATATAtcgctctctttttctttagATTTGATTTGACGGCACTT
CGAATGAAACCTGATCCCGCGTCGGGAGGTGACGAGGGTCACTAGACTCC
GTTTTTTTCATCGTTTCCTTGACTACGACTGACCTTTCCTTGTCCATACC
AGGTTCCGG back to topCoding sequence (CDS) from alignment at CM002457.1:850151..852009+ >rna1524 ID=rna1524|Name=rna1524|organism=Nannochloropsis gaditana|type=CDS|length=693bp|location=Sequence derived from alignment at CM002457.1:850151..852009+ (Nannochloropsis gaditana)
ATGCTTTTGGCGCCCGTGCTCGTACTGTTGATGAGCAGCACTCATGCTTT
TACTGGCAGGCCCCGAGACATAAGCCCGGCCTACCGCACCACCACACGGA
TGCGAGGATCTATCGAAGAACTCTACAGCGGTGAACCCCTCGATCCTAAC
AGGCGGAAACTCCGTCTTGCTTTTCTATCCACCTCACGTCCCAAGCAACC
GCCCAAGACCGAGAAAGAGCGCCAGCTGGACGAGAAGGTCTGGGGTCGAT
GGCGCCTTGAGGAGGAATCCATCGACCGGCCACCGGCGGCTGACTTGGCT
AAGTACGGGAAGAAACTCAAACCTACATATTCGAGATTTGAGGAGGACTT
ATTTCTGGACATGTACAATGGCTTGATGCTTACAAAGGAGGACACGTGCG
CCTTCGGAATGGGCTGGCAGTGGACGAACTTGAAGGATGTTTATTCCGCG
CCCATGATCCGGTTTCGAATCAACCGAAAAGAGGTAGGAATCGACTTCGA
CGAGTATGAGAGCGTGGATCACATGCCGTCGGTCTCTTTTTACTCAGGGA
CCTTCAAGGACGGCTCCATGGACGTTATCGAGGGGACAATCCAGCGGAAC
AGGGACGCAGCCCCGCCCGAGGACGGATCCGCGCCCGTGGTCGTCACGGT
CGGCACATTCAGGATGGTTAAAGTCGCATCCCTTGTCTTGTAG back to top
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