rna1517, rna1517 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1517
Unique Name	rna1517
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2025
Alignment location	CM002457.1:828686..831246 +

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Properties


Property Name	Value
Product	rubisco expression protein
Orig transcript id	gnl\|cribi\|Naga_100007g58.6491.mrna
Orig protein id	gnl\|cribi\|Naga_100007g58.6491
Gene	cbbX
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:828686..831246 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
cbbX	gene1463	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1517	rna1517-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29164.1	cds1514	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:828686..831246+
coding sequence from alignment at CM002457.1:828686..831246+

mRNA sequence

>rna1517 ID=rna1517|Name=rna1517|organism=Nannochloropsis gaditana|type=mRNA|length=2025bp
AGGGGAAAGTTTGGGAGGATTCGGGCCCTTGCTCCCGCTCCGTCAAGCAA
TGAATGGAAGCAGCAAGCGACGACGGCAGGAAGTAGACGAGGAGGACGAG
AAACTGAAAGCTTTGTTGCAAAGTTCCGATGATTACGTACCTTACGTGTC
ATTGAAGCATCGTCAAGGCCTCTCGCGGAATGGGAAAGACGCGGGCCACG
AGGTCGAGGCGCGAGACCAGCAGGAGCGCACGGACGAGGACACCGACAAC
AGCGGAGAGCCCGTGGCTGATGGCATATTGAAGAGTCGGCTGGATTTAGA
CGCAGAGGTGACCGCAACCAAGCGTAGCCTCTTGGAGGTGACGGAGGAAA
TGAAAAAAAAACGAGAACACATGGACCCGACCCTGCTGAAGTTAGAGGCG
CAGAAACAGCAAGAGCAGCGGATATTGGGGGAAGCAAATCAAGTGCAAAC
CAACGCCTTGCAATCAGCGGTAGAGCGCGCCCAAGGGGTTCAATACAGCC
AAAGCCTCAAGACCGGGTGGACCCCGCCGTCCCACGTGCGCGCCATGAGT
AAGGCTGACTGCGCGGCATTCCGCAAGAAGTGGCACATTATCTGTGAGGG
CGTGGATCTGCCACCGCCTATCAAGAATTTCAGAGATATGAAATTTCCCG
CGCCAATCATGGAGGCGATGGCAAGGAAGGGGATCACGAAGCCCACGCCC
ATCCAGGTCCAGGGCCTGCCTGTGCTCCTGAGCGGGCGGGACATGGTGGG
CATCGCCTTCACCGGCTCGGGCAAGACCATGACCTTCGGGCTGCCTCTGG
TCATGCTGGCCTTGGCCGAGGAGAAGAAGATGCCGCTCGAGGGCGGAGAG
GGGCCGGTGGGCATCATCCTTTGTCCCTCGCGGGAGCTGGCGGGTCAGAC
CTTCGAGGTCCTGGACTACTACTGCCAGGCTTTGGGTCGAGGGGGGTTCC
CGCGGCCCCGGGCTTTGCTGTGCATCGGCGGCATGGACAAGCGCGCGCAG
ATCGATGCCGTTCAGCGGCAGGGGGTGCACATCGTGGTGGCGACGCCGGG
GCGGCTGCGGGACCTACTGCACCTGAAGAAGATGAGCCTGAGCCTGTGCC
GGTACTTCTGCCTGGACGAGGCCGACCGGATGCTGGACTTGGGCTTCGAC
GAGGAGGTGGCGGAGATTATGAACCACTTCAAGCAGCAACGACAGACCCT
TCTCTTCTCGGCGACGATGCCCCTGAAGATCCAAGACTTCGCGAAAGAGA
CGCTCGTGCGCCCGGTGCTCGTGAATGTGGGTCGCGCGGGCGCCGCCAAT
CTGGACGTCGTCCAGGAGGTGGAGCTGGTCAAGAAGGACGCCAAGATCGT
TTACCTCCTCCAGTGCCTGCAGAAGACGGCCCCGCCGGTCATGATCTTCT
GCGAGCGGAAAAGCGACGTGGACAACATCCACGAGTACCTGCTGCTCAAG
GGCGTGGACGCGGTGGCGATCCACGGGGGCAAGGACCAGGCAGAGCGGGA
CGAGGCCATCCGAGAGTTCAAAGGCGGCGTCAAAGACGTGCTGGTGGCCA
CGGACGTGGCGGCCAAGGGCCTGGACTTCCCCAACATCGAGCACGTGATC
AATTTCGACATGCCCCACGAGATTGAGAACTACGTGCATCGGATAGGCCG
CACAGGCCGATGCGGAAAGACGGGCGTCGCCACCACCTTCATCAACGCGG
AGGTGGAGCAAAGCACCCTGCTGGACCTGAAGCACCTGCTTATTGAGGCC
AAGCAGCGGGTGCCGCCGGTGCTCGAGGCCTTGGAGGACCCGGACCAGGA
CTTGACGGGCGCCATTGACGGTGTGCGGGGTTGCGCCTTCTGCGGCGGAC
TCGGGCATCGGATCACGGACTGCCCCAAGATCGACAAGGACGCCCGCAGG
TTGGGCTCGGGGAGGCGGGATATGCTCATATCGTCTGGGGGCTACGGGGG
AGAGTATTAGGCTGTACATGCGATTTGTTCATGAGGTTCTGTATTGACAA
AGAAGAGAAGCGCAGCTTAGGGATC

protein sequence of rna1517

>rna1517-protein ID=rna1517-protein|Name=rna1517|organism=Nannochloropsis gaditana|type=polypeptide|length=418bp
MVTTMLKATLMGGCLFLASGFQMPAPRAMGRGLPIRMAEEGGSKHGGLVY
DREKALSGDANAGNFRKLSDAMVRAEKEAKRNEEERRQREMAEELARQAR
AKKVAKLNEVMSTPKQAVGSADEFSWDSGVQTALDRLDNELIGLKPVKSR
VRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIF
KAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYY
LYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGM
QSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKE
KLFFSNARSVRNAVDLARMAAANRVYELATAPGASGLITLDELTQVKKED
FDGLLDLVRNAPEGAILA

mRNA from alignment at CM002457.1:828686..831246+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1517 ID=rna1517|Name=rna1517|organism=Nannochloropsis gaditana|type=mRNA|length=2561bp|location=Sequence derived from alignment at CM002457.1:828686..831246+ (Nannochloropsis gaditana)
AGAGGCCTTGACGATGCTTCAATGACACGTAAGGTACGTAATCATCGGAA
CTTTGCAACAAAGCTTTCagtttctcgtcctcctcgtctacTTCCTGCCG
TCGTCGCTTGCTGCTTCCATTCATTGCTTGACGGAGCGGGAGCAAGGGCC
CGAATCCTCCCAAACTTTCCCCTGTGAGTTGTCCGGTAAAAGTATTAATT
AGTTGCCCGGCATGAGCCACAACCTGCCGCGGTACCACCTCAAAACATCG
CACGCGCCGACTCGCAGGGGACGGCGTGGTGTGGGCATCGAGGGTGTCTC
TCTCATCATAAGTGCCCGCGAGGCTCGCCTACAGCCGACTGCCACGGCGA
TCCTGGTCAATGCATGAGACGTTGAGACATACGCTTCCTACGTGTGCAGG
GCGATGGTGGACACGATGCGGTACCAGTCGCACGTTTGAGGGTTATTGTG
CCTCTGTTTGTGGGATTACTCGGGTACCAGGTGTAGGAAAGAACGCGCGA
GCACGGCAACAAAAAGATCTTGTCCTGGTCTCACCCTTCTTCTGCTTCAT
GCATACTACACTCCCACGCTTGCGTTCCATTTTCGGCATCATAATGCACA
GACTCAACCGCATACACTGGAACAATGGTGACGACGATGTTGAAGGCGAC
CTTGATGGGGGGCTGCCTCTTCTTGGCCAGTGGATTTCAGGTAAGTGTCG
GGCTAGCTGGGCATGGGGACGGTGCAAATTCAGGTCGGGGGAGACTATCC
CTTTATCAAACAAAATGCTCCTCCTGGCCTGATCACatcgcttttctttt
tccgcgCCTCGATGTCAGATGCCTGCACCCCGTGCAATGGGGAGGGGCCT
TCCAATTCgcatggcggaggagggggggtccAAGCATGGAGGCCTCGTCT
ACGACCGGGAAAAAGCGCTGTCGGGGGATGCCAACGCCGGCAACTTTCGT
AAGTTGAGCGACGCCATGGTGCGTGCAGAAAAGGAAGCGAAGCGTAATGA
GGAAGAGCGTAGGCAGCGGGAAATGGCAGAGGAGCTCGCACGGCAGGCCC
GGGCCAAGAAAGTGGCCAAGTTGAACGAGGTGATGTCTACGCCCAAGCAA
GCTGTGGGCTCCGCCGACGAATTCAGCTGGGACAGCGGCGTGCAGACAGC
CTTGGACCGGCTGGACAATGAGCTGATCGGGCTGAAGCCGGTAAAGTCCC
GCGTCCGCGAGCTGGCGAGCATGCTAGTGGTGGACAAGATGCGGCAGTCG
ATCGGTCTCGACCCCTTCATCTCCGACGGCCTCCACATGTGCTTCACGGG
CGCCCCAGGCACGGGCAAGACGACGGTGGCATTCCGCATGGGGGACATTT
TCAAGGCGATGGGCTACTGCCGGGCCGGCCACGTGGTGCTGGCGACGCGC
GACACTTTGGTGGGCCAGTACGTCGGCCACACGGGGCCCAAGACCAAGGA
GGTGATCAAGCAGGCCATGGGcggcatcctcttcatcgaCGAGGCCTATT
ATCTGTACAACGCCGGCAACGACCGCGACTACGGCGTGGAGTCCATCGAG
ATCCTCCTCAAGGTAATGGAGCAGCGCTCCTCCGACCTGATCGTCATCTT
CGCGGGCTACAAGGACCGCATGGACCAGTTCTTCTCATACATCCCCGGCA
TGCAGTCCCGCGTCAATCTCCACATCGACTTTCCGGATATGGAGCCCGAC
GACCTGGTGGACGTGGGCAAGCTCATGTTCAACAACATGGAGTACAAGCT
CGCCCCCGACGccgagcccgccctccgagaGTACGTCACGCTGCGCAAGG
AGAaactcttcttctccaatGCCCGCTCTGTCCGCAACGCAGTCGACCTG
GCTCgcatggcggcggccaatAGGGTGTACGAgctggccacggccccggg
AGCCTCGGGGCTCATCACGCTGGACGAGCTGACGCAGGTCAAGAAAGAGG
ACTTCGACGGGCTGCTGGACTTGGTCCGCAACGCCCCCGAGGGCGCTATT
CTGGCCTAATGCCGATCGCGTGTAGATCGTATAAGCTTATGTGCAGTCCA
TGCTTGTGCGTGATTTCCCGCAATCTCCATGTCCACCACTACGGGCTGTC
GGAGGGTGTGTACTCAATATTTCTCTCTGGAACGTGTCGTGCGGTAGGGG
ACGATAGGGGATGCGCTTGGGTTTGCCAGATACGTGTTATCGACGATGAA
AGATTGATACGGACAAAATAATTGAACTTTTGTAGTCGTGTAGAGACAAG
GGCCAGGGAGATAGTGGGTAGCGTCGCTTGAGCTCTCTTTCCTTAGACAA
ATCGATGTCCGCAAGGAACAACACGGTATGTGTGATGATTGGAACAGCGT
ATGGCGGAAAGGAATTGAAGGAccgagggaagagagaaacgAGTTTGACC
AATGAGGGATGAGCTGTGACTTTTCCCCTTTTGTTGCACTTTATTCTCAT
GTATGCTTTCTCTTCGACAAAATTGTTGTCCTAAGACAAGTTGTAATCAT
CTAGAGCGGAAAGGGAGCGTCCGCGGATCAAGTGATCTCCCGCGGCTCCC
GTAACTACCCG

Coding sequence (CDS) from alignment at CM002457.1:828686..831246+

>rna1517 ID=rna1517|Name=rna1517|organism=Nannochloropsis gaditana|type=CDS|length=2514bp|location=Sequence derived from alignment at CM002457.1:828686..831246+ (Nannochloropsis gaditana)
ATGGTGACGACGATGTTGAAGGCGACCTTGATGGGGGGCTGCCTCTTCTT
GGCCAGTGGATTTCAGATGCCTGCACCCCGTGCAATGGGGAGGGGCCTTC
CAATTCgcatggcggaggagggggggtccAAGCATGGAGGCCTCGTCTAC
GACCGGGAAAAAGCGCTGTCGGGGGATGCCAACGCCGGCAACTTTCGTAA
GTTGAGCGACGCCATGGTGCGTGCAGAAAAGGAAGCGAAGCGTAATGAGG
AAGAGCGTAGGCAGCGGGAAATGGCAGAGGAGCTCGCACGGCAGGCCCGG
GCCAAGAAAGTGGCCAAGTTGAACGAGGTGATGTCTACGCCCAAGCAAGC
TGTGGGCTCCGCCGACGAATTCAGCTGGGACAGCGGCGTGCAGACAGCCT
TGGACCGGCTGGACAATGAGCTGATCGGGCTGAAGCCGGTAAAGTCCCGC
GTCCGCGAGCTGGCGAGCATGCTAGTGGTGGACAAGATGCGGCAGTCGAT
CGGTCTCGACCCCTTCATCTCCGACGGCCTCCACATGTGCTTCACGGGCG
CCCCAGGCACGGGCAAGACGACGGTGGCATTCCGCATGGGGGACATTTTC
AAGGCGATGGGCTACTGCCGGGCCGGCCACGTGGTGCTGGCGACGCGCGA
CACTTTGGTGGGCCAGTACGTCGGCCACACGGGGCCCAAGACCAAGGAGG
TGATCAAGCAGGCCATGGGcggcatcctcttcatcgaCGAGGCCTATTAT
CTGTACAACGCCGGCAACGACCGCGACTACGGCGTGGAGTCCATCGAGAT
CCTCCTCAAGGTAATGGAGCAGCGCTCCTCCGACCTGATCGTCATCTTCG
CGGGCTACAAGGACCGCATGGACCAGTTCTTCTCATACATCCCCGGCATG
CAGTCCCGCGTCAATCTCCACATCGACTTTCCGGATATGGAGCCCGACGA
CCTGGTGGACGTGGGCAAGCTCATGTTCAACAACATGGAGTACAAGCTCG
CCCCCGACGccgagcccgccctccgagaGTACGTCACGCTGCGCAAGGAG
AaactcttcttctccaatGCCCGCTCTGTCCGCAACGCAGTCGACCTGGC
TCgcatggcggcggccaatAGGGTGTACGAgctggccacggccccgggAG
CCTCGGGGCTCATCACGCTGGACGAGCTGACGCAGGTCAAGAAAGAGGAC
TTCGACGGGCTGCTGGACTTGGTCCGCAACGCCCCCGAGGGCGCTATTCT
GGCCTAAATGGTGACGACGATGTTGAAGGCGACCTTGATGGGGGGCTGCC
TCTTCTTGGCCAGTGGATTTCAGATGCCTGCACCCCGTGCAATGGGGAGG
GGCCTTCCAATTCgcatggcggaggagggggggtccAAGCATGGAGGCCT
CGTCTACGACCGGGAAAAAGCGCTGTCGGGGGATGCCAACGCCGGCAACT
TTCGTAAGTTGAGCGACGCCATGGTGCGTGCAGAAAAGGAAGCGAAGCGT
AATGAGGAAGAGCGTAGGCAGCGGGAAATGGCAGAGGAGCTCGCACGGCA
GGCCCGGGCCAAGAAAGTGGCCAAGTTGAACGAGGTGATGTCTACGCCCA
AGCAAGCTGTGGGCTCCGCCGACGAATTCAGCTGGGACAGCGGCGTGCAG
ACAGCCTTGGACCGGCTGGACAATGAGCTGATCGGGCTGAAGCCGGTAAA
GTCCCGCGTCCGCGAGCTGGCGAGCATGCTAGTGGTGGACAAGATGCGGC
AGTCGATCGGTCTCGACCCCTTCATCTCCGACGGCCTCCACATGTGCTTC
ACGGGCGCCCCAGGCACGGGCAAGACGACGGTGGCATTCCGCATGGGGGA
CATTTTCAAGGCGATGGGCTACTGCCGGGCCGGCCACGTGGTGCTGGCGA
CGCGCGACACTTTGGTGGGCCAGTACGTCGGCCACACGGGGCCCAAGACC
AAGGAGGTGATCAAGCAGGCCATGGGcggcatcctcttcatcgaCGAGGC
CTATTATCTGTACAACGCCGGCAACGACCGCGACTACGGCGTGGAGTCCA
TCGAGATCCTCCTCAAGGTAATGGAGCAGCGCTCCTCCGACCTGATCGTC
ATCTTCGCGGGCTACAAGGACCGCATGGACCAGTTCTTCTCATACATCCC
CGGCATGCAGTCCCGCGTCAATCTCCACATCGACTTTCCGGATATGGAGC
CCGACGACCTGGTGGACGTGGGCAAGCTCATGTTCAACAACATGGAGTAC
AAGCTCGCCCCCGACGccgagcccgccctccgagaGTACGTCACGCTGCG
CAAGGAGAaactcttcttctccaatGCCCGCTCTGTCCGCAACGCAGTCG
ACCTGGCTCgcatggcggcggccaatAGGGTGTACGAgctggccacggcc
ccgggAGCCTCGGGGCTCATCACGCTGGACGAGCTGACGCAGGTCAAGAA
AGAGGACTTCGACGGGCTGCTGGACTTGGTCCGCAACGCCCCCGAGGGCG
CTATTCTGGCCTAA

Synonyms

Publications