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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100007g71.6528.mrna |
| Orig protein id | gnl|cribi|Naga_100007g71.6528 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:801027..803504 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1507 ID=rna1507|Name=rna1507|organism=Nannochloropsis gaditana|type=mRNA|length=2556bp
GCTGAAGCGGTAGCGAATGCCAGTCTGTGCTCAAGGCTCCTGTACATGTT
TGAGATTTTTTGGAATAGGATGTACGGGAGATTGGCGTCATTCGTTTGCT
AGTAGACTCTATAGCACCGAGCTGAGATCGAGGGCAAGTAAGAGAAGAGC
GCGAGAGCACACCTCAACAAGACCGCGATCCTTGCTTGCTGATTAGACGT
GCCCTGGTGTTACAAATTGTACGCTGCTGAGTCTATGTAAACCAAAATTA
ACAGGTGTAAGACCCATCTAGAGGGCAAAGGCTCACGTTGTCTGTGGGCG
ATTGCCCATGGCCTCTGCGGCGGCACTTGCATATTTGCCCCCCTCCACCG
GGGAGCAAGAGGATGCTTGGCCATGGGCGCTTTTTGGTCTCAGTTCTGTT
GGGGCACAGGAATTGATTCTACCATTCCTCATATTCTGTTGGCTTCTCTG
TGAGGGACTTTTCTACCTTGTCATGATGTTAGTGCATCGGCGCTTGGACG
TGCTCACCCCACCCGAACGAAGTCAACATGAACCCGAGACGTACGTGCGA
AAAGTTATGGACATAGTAGACAGCGTGCGTGGCGTCTACCCTTTCGAGAC
CTTCCTTACGCGCTGGTGTGGCTCGGCGACGCTCTCTGAACTGAAGCGCG
GCAACGTAGCGCAGTTCCTGGCTTGGGCCTTGCTCTCCCAGGGGGTGGAG
GATCTCCTTCCCCGGGACTACACCATGATCATGCGCATGGTCGACATGAT
CGACCAACGCTACACGCTGAACCTTGAGCAAGGCTTAAATACCGATGTGC
GCACGCTTCGCATGACGTTGGAGCCTTTAGAGGTCATCCATCGGCCCCTC
TGCGTGTACCTGGGCGTGACCGTAATCCCACGCCTGTTCGGCAACTGCGT
GCTGCGCCTCCAGGGTTTCGAAAGACTTGAGCACCAGGGCTTGGTCTACT
GGTATCGGCCGAGTCGAGAATGGCCGAGCTCCGCCCGACAGCTGCCTCTA
GTCTTCTTCCACGGGGTGAGCCCAGGCCAGTGCGCCTACGCGGGCCTGAC
CACTCTGCTGAGCGAGGGGCGCTCGGCGGTGTTGGTAGAGATCCCTCACA
TCGCCATGTCGCTGGAGGCTTTTCGGGCGAAAACTGAGGCGGAAGTCACG
GAGGCGATGAAGAGCATCTGTGCGCGGCACCACATACGCCATTTCACGGT
CGCAGGCCACAGCTACGGGACTATTTGGGCGGGCTGGGTCTTGCGGGCCA
TGCCGAAAAAGACATCTCCGAGCATTTTCACGGCGGCAGGCATCAAAAAG
CGGATTTTGGACTACGGGCTGCATTACGTGGTCTCCCGAGAGCTAACGAT
CGCCAACGCGATGCGTCGTCAGTTCTGGTGGCATCAGAAAATATTGCACG
CTGAGGACATTCATTGCCCTGTGGTAGTAGGCCTGGCAAGTGACGACATC
TTGCTCTCAGCCCCCGCGATCCGCAAGTACCTTCAAGACAATTGCAGCGA
CCTCGACATTATTTGGTGGCAAGACTTCTCCCACGGGGAAATCCTCACCT
CACTTCCCTGTCAGCACTCCTTGGATCAAGCCATTAGGGCGCAGGAGGAA
CGCTACTACCACCGCGGCCCGACCCGGCCTTATTGGGAATACCTGCCTGG
CCACGGCCCACCCGCAGTCAGCGCCGATACCTCAGGGTTGCGGCGATGCA
GGTCACGGTCGCGCCGTGTTAGCGAGAATCTCAGCTCCCCTTTCTCCCAA
ACATCTTTTGGTAAGCATTTATCTCCACTGTCCCCCTCATCGTCGTCCTC
TGCTTCTTCTGTTAGCGGCAGTGACGTTCACCTTCAGCGGCAGAAGGAGA
GAAGGCCGAGAAAGTTAGCGCACGACACTCTCAGATCGACCACAGTCACC
TCTTCACCTGATTTACTTGAAGAGCTCGACACAGCAAGTTCCGCATCTGG
GGCCGGGCTACGGAAGCACTCTCCCTCTGACGAGCAGCGTAGGCGTTGGT
ACGAACAGCAGGACCGGGAGCGCGAACATGTAACCAAGAGAGAAAACAGA
GGGGGTGTCGATGATCCATTCCCTCCCCAATTCTGTCCTCCCATTCCTGA
GTCCGAGCCCCAAGACTCTGGAATGGGAAAGAGGACGTGTTTGAATTCGG
TGAATCATGGCCTAGTCGAAGAGAGAAGCGCCAAGACTGTACTGCCGGGC
GTCTTGACCGGGTGGTGGTAGAGACGGCTTTGTGAAAACCAATTTTGTTC
TTGTCATTTACTGATGATTGTGAAGCTTGTGAACATGGCACGTCTAAGCT
TGAGCTTAGCCTCTAGAAGTTTGTGCAATTTATAGAAAGCTACCCTACAG
CGGTTATCTTTACTTTGTTGGCTTCACAACACGGGAAATTATTTAAACCT
TACTGTGATATTTAAAGTAACGAGTTTTCTAGTCTCGTAAGCCAATGTAG
AAATACTGAATTGATGCAAAACTTGCGGGGCGTGGGATTCTTCTTCACAT
GATGTTTTGTATCCTTTACATACCTTTACAATTTTTGCTTCTATTATACA
CATATG back to topprotein sequence of rna1507 >rna1507-protein ID=rna1507-protein|Name=rna1507|organism=Nannochloropsis gaditana|type=polypeptide|length=545bp
MDIVDSVRGVYPFETFLTRWCGSATLSELKRGNVAQFLAWALLSQGVEDL
LPRDYTMIMRMVDMIDQRYTLNLEQGLNTDVRTLRMTLEPLEVIHRPLCV
YLGVTVIPRLFGNCVLRLQGFERLEHQGLVYWYRPSREWPSSARQLPLVF
FHGVSPGQCAYAGLTTLLSEGRSAVLVEIPHIAMSLEAFRAKTEAEVTEA
MKSICARHHIRHFTVAGHSYGTIWAGWVLRAMPKKVMQAVLLDPVCILLC
LPNTPFNFLYRLPHDPPSHVQTSPSIFTAAGIKKRILDYGLHYVVSRELT
IANAMRRQFWWHQKILHAEDIHCPVVVGLASDDILLSAPAIRKYLQDNCS
DLDIIWWQDFSHGEILTSLPCQHSLDQAIRAQEERYYHRGPTRPYWEYLP
GHGPPAVSADTSGLRRCRSRSRRVSENLSSPFSQTSFVTSSPDLLEELDT
ASSASGAGLRKHSPSDEQRRRWYEQQDREREHVTKRENRGGVDDPFPPQF
CPPIPESEPQDSGMGKRTCLNSVNHGLVEERSAKTVLPGVLTGWW back to topmRNA from alignment at CM002457.1:801027..803504- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1507 ID=rna1507|Name=rna1507|organism=Nannochloropsis gaditana|type=mRNA|length=2478bp|location=Sequence derived from alignment at CM002457.1:801027..803504- (Nannochloropsis gaditana)
AGGTGCGACGGGGAAGAAGGCGGTCCTTTTGGTCCGAAAGCTTTGGCTTA
GCCATTCATTTCTCTGGCTCGCTTAGCAATGGATACATAGATGAGAAATC
GGGTTTGTAAGAGGTAACACGCACTCGCAAATCACGGCGAATGTATCAGT
GTTGGGGTGTGGAGCGGACGCTCATGGCTTCAGAGTTGTCTACGTGCGCC
TTGTTGAACTTGAAGGCACCGCGATTACTTCTCGATGTAGGCAGCACGAT
TGACATATCAAATTTGTTGATTCAACATCTGTTGTTGTCCTAAGCCGTAG
AGCCATTCATTCTCTTTCCTTCATCCCGAGTAGAAGTCAACATGAACCCG
AGACGTACGTGCGAAAAGTTATGGACATAGTAGACAGCGTGCGTGGCGTC
TACCCTTTCGAGACCTTCCTTACGCGCTGGTGTGGCTCGGCGACGCTCTC
TGAACTGAAGCGCGGCAACGTAGCGCAGTTCCTGGCTTGGGCCTTGCTCT
CCCAGGGGGTGGAGGATCTCCTTCCCCGGGACTACACCATGATCATGCGC
ATGGTCGACATGATCGACCAACGCTACACGCTGAACCTTGAGCAAGGCTT
AAATACCGATGTGCGCACGCTTCGCATGACGTTGGAGCCTTTAGAGGTCA
TCCATCGGCCCCTCTGCGTGTACCTGGGCGTGACCGTAATCCCACGCCTG
TTCGGCAACTGCGTGCTGCGCCTCCAGGGTTTCGAAAGACTTGAGCACCA
GGGCTTGGTCTACTGGTATCGGCCGAGTCGAGAATGGCCGAGCTCCGCCC
GACAGCTGCCTCTAGTCTTCTTCCACGGGGTGAGCCCAGGCCAGTGCGCC
TACGCGGGCCTGACCACTCTGCTGAGCGAGGGGCGCTCGGCGGTGTTGGT
AGAGATCCCTCACATCGCCATGTCGCTGGAGGCTTTTCGGGCGAAAACTG
AGGCGGAAGTCACGGAGGCGATGAAGAGCATCTGTGCGCGGCACCACATA
CGCCATTTCACGGTCGCAGGCCACAGCTACGGGACTATTTGGGCGGGCTG
GGTCTTGCGGGCCATGCCGAAAAAGGTGATGCAGGCGGTGCTCCTCGACC
CCGTCTGCATACTCCTCTGCCTGCCCAATACACCCTTCAATTTCTTGTAC
CGTCTCCCCCACGATCCACCCTCCCACGTGCAGACATCTCCGAGCATTTT
CACGGCGGCAGGCATCAAAAAGCGGATTTTGGACTACGGGCTGCATTACG
TGGTCTCCCGAGAGCTAACGATCGCCAACGCGATGCGTCGTCAGTTCTGG
TGGCATCAGAAAATATTGCACGCTGAGGACATTCATTGCCCTGTGGTAGT
AGGCCTGGCAAGTGACGACATCTTGCTCTCAGCCCCCGCGATCCGCAAGT
ACCTTCAAGACAATTGCAGCGACCTCGACATTATTTGGTGGCAAGACTTC
TCCCACGGGGAAATCCTCACCTCACTTCCCTGTCAGCACTCCTTGGATCA
AGCCATTAGGGCGCAGGAGGAACGCTACTACCACCGCGGCCCGACCCGGC
CTTATTGGGAATACCTGCCTGGCCACGGCCCACCCGCAGTCAGCGCCGAT
ACCTCAGGGTTGCGGCGATGCAGGTCACGGTCGCGCCGTGTTAGCGAGAA
TCTCAGCTCCCCTTTCTCCCAAACATCTTTTGGTAAGCATTTATCTCCAC
TGTCCCCCTCATCGTCGTCCTCTGCTTCTTCTGTTAGCGGCAGTGACGTT
CACCTTCAGCGGCAGAAGGAGAGAAGGCCGAGAAAGTTAGCGCACGACAC
TCTCAGATCGACCACAGTCACCTCTTCACCTGATTTACTTGAAGAGCTCG
ACACAGCAAGTTCCGCATCTGGGGCCGGGCTACGGAAGCACTCTCCCTCT
GACGAGCAGCGTAGGCGTTGGTACGAACAGCAGGACCGGGAGCGCGAACA
TGTAACCAAGAGAGAAAACAGAGGGGGTGTCGATGATCCATTCCCTCCCC
AATTCTGTCCTCCCATTCCTGAGTCCGAGCCCCAAGACTCTGGAATGGGA
AAGAGGACGTGTTTGAATTCGGTGAATCATGGCCTAGTCGAAGAGAGAAG
CGCCAAGACTGTACTGCCGGGCGTCTTGACCGGGTGGTGGTAGAGACGGC
TTTGTGAAAACCAATTTTGTTCTTGTCATTTACTGATGATTGTGAAGCTT
GTGAACATGGCACGTCTAAGCTTGAGCTTAGCCTCTAGAAGTTTGTGCAA
TTTATAGAAAGCTACCCTACAGCGGTTATCTTTACTTTGTTGGCTTCACA
ACACGGGAAATTATTTAAACCTTACTGTGATATTTAAAGTAACGAGTTTT
CTAGTCTCGTAAGCCAATGTAGAAATACTGAATTGATGCAAAACTTGCGG
GGCGTGGGATTCTTCTTCACATGATGTTTTGTATCCTTTACATACCTTTA
CAATTTTTGCTTCTATTATACACATATG back to topCoding sequence (CDS) from alignment at CM002457.1:801027..803504- >rna1507 ID=rna1507|Name=rna1507|organism=Nannochloropsis gaditana|type=CDS|length=3276bp|location=Sequence derived from alignment at CM002457.1:801027..803504- (Nannochloropsis gaditana)
TCACCTCTTCACCTGATTTACTTGAAGAGCTCGACACAGCAAGTTCCGCA
TCTGGGGCCGGGCTACGGAAGCACTCTCCCTCTGACGAGCAGCGTAGGCG
TTGGTACGAACAGCAGGACCGGGAGCGCGAACATGTAACCAAGAGAGAAA
ACAGAGGGGGTGTCGATGATCCATTCCCTCCCCAATTCTGTCCTCCCATT
CCTGAGTCCGAGCCCCAAGACTCTGGAATGGGAAAGAGGACGTGTTTGAA
TTCGGTGAATCATGGCCTAGTCGAAGAGAGAAGCGCCAAGACTGTACTGC
CGGGCGTCTTGACCGGGTGGTGGTAGATGGACATAGTAGACAGCGTGCGT
GGCGTCTACCCTTTCGAGACCTTCCTTACGCGCTGGTGTGGCTCGGCGAC
GCTCTCTGAACTGAAGCGCGGCAACGTAGCGCAGTTCCTGGCTTGGGCCT
TGCTCTCCCAGGGGGTGGAGGATCTCCTTCCCCGGGACTACACCATGATC
ATGCGCATGGTCGACATGATCGACCAACGCTACACGCTGAACCTTGAGCA
AGGCTTAAATACCGATGTGCGCACGCTTCGCATGACGTTGGAGCCTTTAG
AGGTCATCCATCGGCCCCTCTGCGTGTACCTGGGCGTGACCGTAATCCCA
CGCCTGTTCGGCAACTGCGTGCTGCGCCTCCAGGGTTTCGAAAGACTTGA
GCACCAGGGCTTGGTCTACTGGTATCGGCCGAGTCGAGAATGGCCGAGCT
CCGCCCGACAGCTGCCTCTAGTCTTCTTCCACGGGGTGAGCCCAGGCCAG
TGCGCCTACGCGGGCCTGACCACTCTGCTGAGCGAGGGGCGCTCGGCGGT
GTTGGTAGAGATCCCTCACATCGCCATGTCGCTGGAGGCTTTTCGGGCGA
AAACTGAGGCGGAAGTCACGGAGGCGATGAAGAGCATCTGTGCGCGGCAC
CACATACGCCATTTCACGGTCGCAGGCCACAGCTACGGGACTATTTGGGC
GGGCTGGGTCTTGCGGGCCATGCCGAAAAAGGTGATGCAGGCGGTGCTCC
TCGACCCCGTCTGCATACTCCTCTGCCTGCCCAATACACCCTTCAATTTC
TTGTACCGTCTCCCCCACGATCCACCCTCCCACGTGCAGACATCTCCGAG
CATTTTCACGGCGGCAGGCATCAAAAAGCGGATTTTGGACTACGGGCTGC
ATTACGTGGTCTCCCGAGAGCTAACGATCGCCAACGCGATGCGTCGTCAG
TTCTGGTGGCATCAGAAAATATTGCACGCTGAGGACATTCATTGCCCTGT
GGTAGTAGGCCTGGCAAGTGACGACATCTTGCTCTCAGCCCCCGCGATCC
GCAAGTACCTTCAAGACAATTGCAGCGACCTCGACATTATTTGGTGGCAA
GACTTCTCCCACGGGGAAATCCTCACCTCACTTCCCTGTCAGCACTCCTT
GGATCAAGCCATTAGGGCGCAGGAGGAACGCTACTACCACCGCGGCCCGA
CCCGGCCTTATTGGGAATACCTGCCTGGCCACGGCCCACCCGCAGTCAGC
GCCGATACCTCAGGGTTGCGGCGATGCAGGTCACGGTCGCGCCGTGTTAG
CGAGAATCTCAGCTCCCCTTTCTCCCAAACATCTTTTGTCACCTCTTCAC
CTGATTTACTTGAAGAGCTCGACACAGCAAGTTCCGCATCTGGGGCCGGG
CTACGGAAGCACTCTCCCTCTGACGAGCAGCGTAGGCGTTGGTACGAACA
GCAGGACCGGGAGCGCGAACATGTAACCAAGAGAGAAAACAGAGGGGGTG
TCGATGATCCATTCCCTCCCCAATTCTGTCCTCCCATTCCTGAGTCCGAG
CCCCAAGACTCTGGAATGGGAAAGAGGACGTGTTTGAATTCGGTGAATCA
TGGCCTAGTCGAAGAGAGAAGCGCCAAGACTGTACTGCCGGGCGTCTTGA
CCGGGTGGTGGTAGATGGACATAGTAGACAGCGTGCGTGGCGTCTACCCT
TTCGAGACCTTCCTTACGCGCTGGTGTGGCTCGGCGACGCTCTCTGAACT
GAAGCGCGGCAACGTAGCGCAGTTCCTGGCTTGGGCCTTGCTCTCCCAGG
GGGTGGAGGATCTCCTTCCCCGGGACTACACCATGATCATGCGCATGGTC
GACATGATCGACCAACGCTACACGCTGAACCTTGAGCAAGGCTTAAATAC
CGATGTGCGCACGCTTCGCATGACGTTGGAGCCTTTAGAGGTCATCCATC
GGCCCCTCTGCGTGTACCTGGGCGTGACCGTAATCCCACGCCTGTTCGGC
AACTGCGTGCTGCGCCTCCAGGGTTTCGAAAGACTTGAGCACCAGGGCTT
GGTCTACTGGTATCGGCCGAGTCGAGAATGGCCGAGCTCCGCCCGACAGC
TGCCTCTAGTCTTCTTCCACGGGGTGAGCCCAGGCCAGTGCGCCTACGCG
GGCCTGACCACTCTGCTGAGCGAGGGGCGCTCGGCGGTGTTGGTAGAGAT
CCCTCACATCGCCATGTCGCTGGAGGCTTTTCGGGCGAAAACTGAGGCGG
AAGTCACGGAGGCGATGAAGAGCATCTGTGCGCGGCACCACATACGCCAT
TTCACGGTCGCAGGCCACAGCTACGGGACTATTTGGGCGGGCTGGGTCTT
GCGGGCCATGCCGAAAAAGGTGATGCAGGCGGTGCTCCTCGACCCCGTCT
GCATACTCCTCTGCCTGCCCAATACACCCTTCAATTTCTTGTACCGTCTC
CCCCACGATCCACCCTCCCACGTGCAGACATCTCCGAGCATTTTCACGGC
GGCAGGCATCAAAAAGCGGATTTTGGACTACGGGCTGCATTACGTGGTCT
CCCGAGAGCTAACGATCGCCAACGCGATGCGTCGTCAGTTCTGGTGGCAT
CAGAAAATATTGCACGCTGAGGACATTCATTGCCCTGTGGTAGTAGGCCT
GGCAAGTGACGACATCTTGCTCTCAGCCCCCGCGATCCGCAAGTACCTTC
AAGACAATTGCAGCGACCTCGACATTATTTGGTGGCAAGACTTCTCCCAC
GGGGAAATCCTCACCTCACTTCCCTGTCAGCACTCCTTGGATCAAGCCAT
TAGGGCGCAGGAGGAACGCTACTACCACCGCGGCCCGACCCGGCCTTATT
GGGAATACCTGCCTGGCCACGGCCCACCCGCAGTCAGCGCCGATACCTCA
GGGTTGCGGCGATGCAGGTCACGGTCGCGCCGTGTTAGCGAGAATCTCAG
CTCCCCTTTCTCCCAAACATCTTTTG back to top
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