rna1499, rna1499 (mRNA) Nannochloropsis gaditana

Overview
Namerna1499
Unique Namerna1499
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2408
Alignment locationCM002457.1:785815..786135 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g81.6513.mrna
Orig protein idgnl|cribi|Naga_100007g81.6513
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:785815..786135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g81gene1447Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29186.1cds1496Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1499rna1499-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1499 ID=rna1499|Name=rna1499|organism=Nannochloropsis gaditana|type=mRNA|length=2408bp
TCTCGAGTCTGTCCGCCCCATTTACTATAGGAATGATTTTACTGACTTGA
CAGTAGTCGCAGAGGAAGAATGGCACTCAAGAAGGTGGGAGGATGAAATA
CGTTTACCATTTCCTTGAAGGTGACAGAGTACCCCCCCTTCCGCCGGGGC
CCATCGTCATCAGTTGGCTCCGCCGGTGGCCGCGCCCCTTCTGTTCGTGC
CTCTGGAGATCCCTCGATCTGACTCCCACCACACCGATGGCCTTTCAACA
CACGCACACGCTTGAGAGATTGCGAGCAAGGCGTTGCTACACGCGACTTA
TAAATATGATGCCAGCCAATCATGTCTTTCACCTTTTCACAAAATAGGGA
TCCTCCACTGGGTGTAATTCATGCGATGAATGTGGTTGCCTGGCAGGAAC
AACCTTTCCTCTACAACCGGGAAAAGCGAAGTAACGCCCTTTTTACCTCC
ATTGCAAGCTTCCATGGACTCAACTGAGGTTGACAGTGACTCGGAGGAAA
GCCGCTCTGTTAAATGCTCACCTGCGCAGCTCTACCCGACATTTGCCTTC
CTAGGAGTACAGATGTGTTGGTCGGTTGCGTACGCGTACATTACTCCCAT
TCTTGTGACATTCAATTTGAACATAGAAACAGTGGGTCTTGTGTGGTGCA
TGAGTTCATTGGCAAGCTGTGCGACGGTGCCTTTGCTTTCGGCAGCGAGT
GATTTTACGCAAAATTCGTGGGGGCGGAGGCGGCCTTACATGGCCATGTT
CTTGCTTGTTGGAGGAGGGGGGCTGCTTTTACTGGCTTACGCGGACAGGA
TTGGTGTGTGGTTTGGTGATATCGGTGGACAGCAACGGAATGCCCTAAGC
ATGGCTGTAATGGGGCTTATCTTGAGCCAAGTCGGCTTGGACGGGATCCA
GTGTATGGAGCGAGGACTATGCACCGACACACTCGACGCGGACGCATTGC
AAGGAGTCAATGCTTTTTTTGCCCTTCAAGGCAGCTTGGGCCGAGTGGTT
GGCTTTGGGCTGGGTGCCGCAAACCTGGGAAAGGCCCCAGGGCTGTCATA
CCTGGGAGATCAGATCCAAATATTGTTTCTGCTCTCCGCCTTTCTTTTAT
TTCTTACAACAAGTACCACGCTCCTTACTGCTAGAGAAAAACGGTTCATA
CCGCAGCTCTACGAGCTATTTAATGCATCCGTGACCTCCTCTGGCAAACG
CGCGCTATTCGGTATGAAATCCTTGCCCAAGGCAGTTCGCCTCGCAGCAG
TAAGTAATCTTCTGGCCTGGAGCTCTTTCGCATTGTTATTCTACTACGGA
TCCTACTTCTACGGCTCCTTTATCTTTGGAGGTGATCCGGAAGACACTGG
AGTTATCGACAGCATCTATGAGCGCGGTGTCCAGTCCGCTAGTTTTGGAT
TCTTGCTCATGGCTGTCGTGGGGAGCATGATGTCGCTTGGCCTCGGATTT
GTTACAGCCAAAGTAGGAATTAAAACAATGTGGGTATCCACCCTGGCGTT
TGCTGCAGCTACTTTTCTCGGGTTCTTTTTCCTTCGCCCAGGGGATAGGG
GCGCAGCGTTGGCTCTTTCCGCCTGTCTGGGTTTGCCTTTGGCCGCTAGC
TATCAGTGTCCGTGGGCGATAGTGACAGTAGCTGTACGACGTTCGGAAAA
TAGCGCCCTGTATTGTAGTTTATTCCGAAGTCTGAGCGAAGTACTTCCCT
TTGCTCTACAAGGTCTGATCGGGTCAGCCCTTTTAAGCGTTTTCCAAGGA
AGCGCTCGATCTGTCTTCGCAGCGGCCTCTGTGCTCATGGCCGCGGCTGC
TGTGCACACATATTTCTTTGTTTTGGACGTTCAAGACGTGGAGGAGTACG
AAGAAGAGATTTAAACGCTTGTCATACTGGAGTGTATACGCACTAGTGTC
GTCATGCACCTCTTTAGGTGCTTGCAAGACGATGCTGTACATCAGGCGGT
ATGAGGGATGTAAAGATTTCATACCTTGCGCCGAGAAAGCGAGCATAAGA
GAAACCCTGGACATAGCATGAGCAAGTAAATAAGATTTTTTTTTAGATTG
TCTCGGACAGAGTTGTAGATGTCTTGAGGGCTGGGCGTGGTGTGGGGTTG
CGGTGGCAGCGAGGTCGTCGGGGCGGGAGGTTGAATGGGTCGGCCACAGG
CCCGGAGGCGCCTGCGCGTTCAGGACAGAAGACACACTTTTATGAAATGG
AGCATTAATCTCCTGTATACCATCGCGTACCTGCGTAGACCATCTATTAC
CTCTCTAATCTTGGTCGCGTTTTCACGGACCGGGGGTCGGACTTCTGCTT
TGCGAAAAGTCTTTTCCCGCCTCGCCATCGCATGAAAGGAGCGAAAGCGA
GAACACAAAACGAAAGTCCTGAAATGCACCCGTCGCTCAGGCGGCCAGTG
CGAGCAAA
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protein sequence of rna1499

>rna1499-protein ID=rna1499-protein|Name=rna1499|organism=Nannochloropsis gaditana|type=polypeptide|length=106bp
MPEVQGHGGRVLRRGGRLIFFVLTHIRQHNMRFRWSPFSRGLSTSDFSWS
LTCGFVTLLSSRAASLINKGQPYSLLQLFILHVFMRIFRAKRHSFNVEVA
GEVFRI
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mRNA from alignment at CM002457.1:785815..786135-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1499 ID=rna1499|Name=rna1499|organism=Nannochloropsis gaditana|type=mRNA|length=321bp|location=Sequence derived from alignment at CM002457.1:785815..786135- (Nannochloropsis gaditana)
ATGCCTGAAGTTCAAGGGCATGGGGGAAGAGTGCTTCGTCGAGGCGGGAG
GCTGATTTTCTTTGTCCTCACACATATCCGTCAGCACAATATGAGGTTTC
GATGGTCGCCTTTCTCCCGCGGTCTTTCCACCTCTGACTTCTCCTGGAGC
TTGACTTGCGGCTTTGTCACCCTGTTGTCTAGCCGCGCTGCCTCGCTCAT
TAATAAGGGACAACCGTATAGCCTCCTGCAATTGTTCATCCTCCACGTCT
TCATGAGGATTTTCAGAGCCAAAAGGCACTCCTTTAACGTCGAAGTGGCC
GGTGAGGTTTTCAGAATCTAA
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Coding sequence (CDS) from alignment at CM002457.1:785815..786135-

>rna1499 ID=rna1499|Name=rna1499|organism=Nannochloropsis gaditana|type=CDS|length=321bp|location=Sequence derived from alignment at CM002457.1:785815..786135- (Nannochloropsis gaditana)
ATGCCTGAAGTTCAAGGGCATGGGGGAAGAGTGCTTCGTCGAGGCGGGAG
GCTGATTTTCTTTGTCCTCACACATATCCGTCAGCACAATATGAGGTTTC
GATGGTCGCCTTTCTCCCGCGGTCTTTCCACCTCTGACTTCTCCTGGAGC
TTGACTTGCGGCTTTGTCACCCTGTTGTCTAGCCGCGCTGCCTCGCTCAT
TAATAAGGGACAACCGTATAGCCTCCTGCAATTGTTCATCCTCCACGTCT
TCATGAGGATTTTCAGAGCCAAAAGGCACTCCTTTAACGTCGAAGTGGCC
GGTGAGGTTTTCAGAATCTAA
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Synonyms
Publications