rna1495, rna1495 (mRNA) Nannochloropsis gaditana

Overview
Namerna1495
Unique Namerna1495
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length528
Alignment locationCM002457.1:773534..775373 +

Link to JBrowse

Properties
Property NameValue
Product1-acyl-sn-glycerol-3-phosphate acyltransferase
Orig transcript idgnl|cribi|Naga_100007g86.6545.mrna
Orig protein idgnl|cribi|Naga_100007g86.6545
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:773534..775373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g86gene1443Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1495rna1495-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29218.1cds1492Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1495 ID=rna1495|Name=rna1495|organism=Nannochloropsis gaditana|type=mRNA|length=528bp
ATGCCCATCGAAAGCGCTGCAGAACTTCAGGCATCATCATCACTTTTTGG
GAAAGAATGCGTGGACGCGAACCTTGCTTTCTACGAGCAAAAGAAGAAAA
ATCCCGACCCACAAGCCTGTGAGGCGGCCGGCAAGGATGTGCTAGCCTGC
TGGGAGACTTTGAGAGCAAAAATTAAAGCAAAGTCTGAGGCATCTTTTCA
AGCCTATGCGGAGTGCCTGGAAATGACGGGCAACAATCTCAAGAAATGTG
CCAATTTGCACGAGGACCTCTTGAAGTCTGTGAGTGAGAAGGAAGCCGGT
GCGGTGGTACGGATAGAGGAGGCTAGAGTGAGGTCCCCTCTTCTCGGCGA
CTATCCTGATGATTCTACAGAAATAATCATTAAAGAGGAGTTTCGAGTCG
AGAAGTATTTATTTTGGACGAGACGATTTAGACATATGCAGCGTGAAGAC
TGGGACCAAAACTATCCAATTGAAAACTGTCCGTCGCAACCCTTTCTCGA
TCTAGGCCTCAAGAGTTATATAGAGTGA
back to top

protein sequence of rna1495

>rna1495-protein ID=rna1495-protein|Name=rna1495|organism=Nannochloropsis gaditana|type=polypeptide|length=422bp
MTSTASLACGACTAAVLVCLTTGDGVATRHIDANVGNRRTSAFLPVMPPM
GTPVTGRIRSHPLEAHKMYYVCQGGTRLSQRRHERLGTRTAVMVVKTDVE
ISDKRDVDPEVGSSSKSTDHTGVSRFGSAMPKSAEGVGPPPAPQDNFKHK
SLAGVPTDYGPYLTIKGFKINAFGFFFCFMAILWAIPWAVFLVVYKALLE
FVDKLDPCRYNVDRSSSLWGWLTSLSTDSLPEMTGLENIPDGPAVFVANH
ASWMDVPYSAQLPVRAKYLAKADLTKVPILGNAMSMAQHVLVDRDDKRSQ
MEALRSALLILKTGTPLFVFPEGTRGPGGKMQAFKMGAFKVATKAGVPIV
PVSIAGTHIMMPKEVIMPQCAGRGITAIHVHPAIPSTDRTDQELSDLAFK
IINDALPNEQQCESTSKETGGA
back to top

mRNA from alignment at CM002457.1:773534..775373+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1495 ID=rna1495|Name=rna1495|organism=Nannochloropsis gaditana|type=mRNA|length=1840bp|location=Sequence derived from alignment at CM002457.1:773534..775373+ (Nannochloropsis gaditana)
ATGACCGCCAAACTTGGGCCTCTATGTCCAACTCACGACATACTTTTGGT
TACATTTGAGAGTGCGCTTGCTCGCTACGAAAGTTTTCCCCATGAATTTG
ACATATTTTCAATCCGGCGGAGATAGCCTTTGTCAGCCCTAAGCCCGAAT
TTTCTCGCACCACACTAGAAGTATCCTCACATTCTCCTTTTCGAATCACA
TGCATCAGCGGATCGTacaggtgggaaaggaacgCCTGAAATCTGTACGA
AATAATGACGTCCACAGCAAGTTTGGCGTGCGGTGCTTGTACCGCAGCCG
TGTTAGTGTGTTTAACAACAGGAGATGGCGTCGCAACCCGGCACATAGAC
GCGAACGTGGGAAATCGGCGGACATCAGCTTTTTTGCCTGTTATGCCTCC
TATGGGAACTCCAGTCACTGGAAGAATACGGTCACATCCGCTTGAGGCCC
ACAAAATGTACTACGTATGTCAAGGCGGGACCCGGCTGTCTCAAAGGCGA
CACGAGCGTCTTGGGACCAGGACAGCAGTCATGGTGGTGAAGACGGACGT
GGAAATTTCTGACAAGCGTGATGTCGATCCAGAAGTGGGCAGCAGTTCAA
AGAGTACTGATCATACAGGGGTGTCTCGGTTTGGGTCCGCCATGCCTAAA
TCCGCGGAAGGCGTAGGACCACCCCCAGCCCCGCAGGATAACTTCAAGCA
CAAGAGCCTAGCCGGCGTTCCTACGGACTACGGGCCATACTTGACAATCA
AAGGTTTCAAGATAAACGCTTTTGGGTTCTTCTTCTGTTTCATGGCAATC
CTCTGGGCTATTCCGTGGGCGGTCTTCCTTGTCGTGTACAAGGCGCTCTT
GGAATTCGTGGACAAGCTCGACCCTTGTCGGTACAACGTGGACCGCAGCA
GTTCCTTGTGGGGTTGGCTTACCAGCCTCAGCACAGATTCTCTGCCCGAA
ATGACAGGTTTGGAGAACATACCCGATGGACCAGCGGTACGTGTTGAGTG
AAGAAGTATTTTAATGCGTGCGTGCAAGTCGGAAGCGAAGTGACTTAAGA
ATGAAAGGTGGGAAGACCGAGCATTTGCTGACCTGTTTCACAGCTCTTAT
CCTCCTGTCTTCTACTTTAAAACGCCCAATTATCTCGTATGTCAACACCG
CAGGTATTCGTTGCGAATCATGCGTCTTGGATGGACGTCCCCTACTCGGC
ACAGCTTCCTGTGCGAGCAAAATATCTGGCAAAAGCTGACTTGACGAAGG
TCCCAATCCTAGGCAACGCCATGAGCATGGCGCAGCACGTACTTGTGGAT
CGAGATGACAAACGCAGTCAAATGGAGGCATTGCGATCGGCGCTCCTAAT
CCTCAAGACTGGCACACCGCTTTTCGTGTTTCCCGAAGGCACTCGCGGcc
caggagggaaaatgcaGGCCTTCAAGATGGGGGCCTTTAAAGTTGCAACC
AAAGCTGGTGTACCTATCGTTCCTGTATCGATCGCAGGTACGCATATCAT
GATGCCAAAAGAGGTTATCATGCCTCAATGTGCCGGTCGTGGGATCACGG
CAATCCACGTCCATCCAGCCATACCATCGACGGACCGGACAGATCAGGAG
CTTTCAGATTTAGCCTTTAAAATCATAAACGACGCGTTGCCCAATGAGCA
GCAATGCGAGTCCACCAGTAAGGAGACTGGAGGTGCTTGATTGAGCACAA
ATAGTCAAAATTAAATGTAATCATAAGGGAAGGatgtgatgaggaagaag
atggtaATGCTGGTGCCAAGCAGCCAGGTCACGTTCAAaagcgggaaaag
aaaattaaTTGACGAGTTTAAGAATTAAATCCGCAGTAAG
back to top

Coding sequence (CDS) from alignment at CM002457.1:773534..775373+

>rna1495 ID=rna1495|Name=rna1495|organism=Nannochloropsis gaditana|type=CDS|length=2538bp|location=Sequence derived from alignment at CM002457.1:773534..775373+ (Nannochloropsis gaditana)
ATGACGTCCACAGCAAGTTTGGCGTGCGGTGCTTGTACCGCAGCCGTGTT
AGTGTGTTTAACAACAGGAGATGGCGTCGCAACCCGGCACATAGACGCGA
ACGTGGGAAATCGGCGGACATCAGCTTTTTTGCCTGTTATGCCTCCTATG
GGAACTCCAGTCACTGGAAGAATACGGTCACATCCGCTTGAGGCCCACAA
AATGTACTACGTATGTCAAGGCGGGACCCGGCTGTCTCAAAGGCGACACG
AGCGTCTTGGGACCAGGACAGCAGTCATGGTGGTGAAGACGGACGTGGAA
ATTTCTGACAAGCGTGATGTCGATCCAGAAGTGGGCAGCAGTTCAAAGAG
TACTGATCATACAGGGGTGTCTCGGTTTGGGTCCGCCATGCCTAAATCCG
CGGAAGGCGTAGGACCACCCCCAGCCCCGCAGGATAACTTCAAGCACAAG
AGCCTAGCCGGCGTTCCTACGGACTACGGGCCATACTTGACAATCAAAGG
TTTCAAGATAAACGCTTTTGGGTTCTTCTTCTGTTTCATGGCAATCCTCT
GGGCTATTCCGTGGGCGGTCTTCCTTGTCGTGTACAAGGCGCTCTTGGAA
TTCGTGGACAAGCTCGACCCTTGTCGGTACAACGTGGACCGCAGCAGTTC
CTTGTGGGGTTGGCTTACCAGCCTCAGCACAGATTCTCTGCCCGAAATGA
CAGGTTTGGAGAACATACCCGATGGACCAGCGGTATTCGTTGCGAATCAT
GCGTCTTGGATGGACGTCCCCTACTCGGCACAGCTTCCTGTGCGAGCAAA
ATATCTGGCAAAAGCTGACTTGACGAAGGTCCCAATCCTAGGCAACGCCA
TGAGCATGGCGCAGCACGTACTTGTGGATCGAGATGACAAACGCAGTCAA
ATGGAGGCATTGCGATCGGCGCTCCTAATCCTCAAGACTGGCACACCGCT
TTTCGTGTTTCCCGAAGGCACTCGCGGcccaggagggaaaatgcaGGCCT
TCAAGATGGGGGCCTTTAAAGTTGCAACCAAAGCTGGTGTACCTATCGTT
CCTGTATCGATCGCAGGTACGCATATCATGATGCCAAAAGAGGTTATCAT
GCCTCAATGTGCCGGTCGTGGGATCACGGCAATCCACGTCCATCCAGCCA
TACCATCGACGGACCGGACAGATCAGGAGCTTTCAGATTTAGCCTTTAAA
ATCATAAACGACGCGTTGCCCAATGAGCAGCAATGCGAGTCCACCAGTAA
GGAGACTGGAGGTGCTTGAATGACGTCCACAGCAAGTTTGGCGTGCGGTG
CTTGTACCGCAGCCGTGTTAGTGTGTTTAACAACAGGAGATGGCGTCGCA
ACCCGGCACATAGACGCGAACGTGGGAAATCGGCGGACATCAGCTTTTTT
GCCTGTTATGCCTCCTATGGGAACTCCAGTCACTGGAAGAATACGGTCAC
ATCCGCTTGAGGCCCACAAAATGTACTACGTATGTCAAGGCGGGACCCGG
CTGTCTCAAAGGCGACACGAGCGTCTTGGGACCAGGACAGCAGTCATGGT
GGTGAAGACGGACGTGGAAATTTCTGACAAGCGTGATGTCGATCCAGAAG
TGGGCAGCAGTTCAAAGAGTACTGATCATACAGGGGTGTCTCGGTTTGGG
TCCGCCATGCCTAAATCCGCGGAAGGCGTAGGACCACCCCCAGCCCCGCA
GGATAACTTCAAGCACAAGAGCCTAGCCGGCGTTCCTACGGACTACGGGC
CATACTTGACAATCAAAGGTTTCAAGATAAACGCTTTTGGGTTCTTCTTC
TGTTTCATGGCAATCCTCTGGGCTATTCCGTGGGCGGTCTTCCTTGTCGT
GTACAAGGCGCTCTTGGAATTCGTGGACAAGCTCGACCCTTGTCGGTACA
ACGTGGACCGCAGCAGTTCCTTGTGGGGTTGGCTTACCAGCCTCAGCACA
GATTCTCTGCCCGAAATGACAGGTTTGGAGAACATACCCGATGGACCAGC
GGTATTCGTTGCGAATCATGCGTCTTGGATGGACGTCCCCTACTCGGCAC
AGCTTCCTGTGCGAGCAAAATATCTGGCAAAAGCTGACTTGACGAAGGTC
CCAATCCTAGGCAACGCCATGAGCATGGCGCAGCACGTACTTGTGGATCG
AGATGACAAACGCAGTCAAATGGAGGCATTGCGATCGGCGCTCCTAATCC
TCAAGACTGGCACACCGCTTTTCGTGTTTCCCGAAGGCACTCGCGGccca
ggagggaaaatgcaGGCCTTCAAGATGGGGGCCTTTAAAGTTGCAACCAA
AGCTGGTGTACCTATCGTTCCTGTATCGATCGCAGGTACGCATATCATGA
TGCCAAAAGAGGTTATCATGCCTCAATGTGCCGGTCGTGGGATCACGGCA
ATCCACGTCCATCCAGCCATACCATCGACGGACCGGACAGATCAGGAGCT
TTCAGATTTAGCCTTTAAAATCATAAACGACGCGTTGCCCAATGAGCAGC
AATGCGAGTCCACCAGTAAGGAGACTGGAGGTGCTTGA
back to top
Synonyms
Publications