rna1489, rna1489 (mRNA) Nannochloropsis gaditana

Overview
Namerna1489
Unique Namerna1489
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1257
Alignment locationCM002457.1:758407..760295 +

Link to JBrowse

Properties
Property NameValue
Productdiaminopimelate decarboxylase
Orig transcript idgnl|cribi|Naga_100007g92.6529.mrna
Orig protein idgnl|cribi|Naga_100007g92.6529
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:758407..760295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g92gene1437Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1489rna1489-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29202.1cds1486Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1489 ID=rna1489|Name=rna1489|organism=Nannochloropsis gaditana|type=mRNA|length=1257bp
CATTTTTTATTAAGATCACTTTCCTGCAATGCTTCATTGTGAAACTAAAG
ATGGCCAAAAATAAGTAAAACTAAAGAAGGCCAAAAATTAGTGCGATTTC
TGGTGTCTGACGCACCCCCAACCAATGTGCACTCAAGGGCCCCCTGGAGG
AAGAGTCTTCTTAGCCTCATAGAGAACTTCTTATCTTTAAATTACAAAAT
AGCATAGGTTTACTTCCTTTCAGTGTACCTTTTTTGAGACGTGATCTATA
CTACACCCAAGAGAAAAGCTCTCATATTTGATGTCCGCTGTCCATCATGA
TCCACCACCATCGCGAATTAACGACGCGAAACCTTCACAAAGTATTGTAC
AAAATGGCAAAGCAACTGCTCCATTTGCATTACTAATAATTGATCCCCAG
GTTGATTTTCATGAGGGCGGCTCCTTAGCGATTGCCGGAGCAGACGAAGA
TGCCCAGCGTATCAAAAGCTTTATTGAGACAAATATTGACCAGATCACCA
ATATTTACGTAACATTGGACTCCCATCAGCTCGTTCACATCAGCCATCCC
TTGTTTTGGAAAGGCCCTCAAAAGGAAACGCCTCCACCTTACACTGTCAT
ATCAAAAGAAGATGTGTTGTGTGGAAAGTGGTCAGCAGCCGATGAGAATT
TGAAGCACTACGTTGAAAACTACATAAAGCAACTTGAGACCACAGGCAAG
TTTCAGCACACTATCTGGCCTGAGCATTGCGTCATTAGCACTCGAGGTCA
TTGTATAGTGGGTCCAGTGCTTGAAGGCATTCATGCTTGGACAGCCAAGA
CGCGTAAACCCATACACTACCATTGGAAAGGTATTAACGCTCTCACAGAG
ATGTACAGCGTCTTTCAAGCAGAAGTCCCGGTACCGGGCTCTCCCGAGAC
CGAAATGAATGACGATCTTGTGAAACAGCTGGTAGCAGAGCCCCGAGTAC
TGATTTGTGGACAGGCGCTTTCCCATTGCGTCAATTTCTCTGTGAGGGAT
CTCATGTTAGCATGGCCCCGTGAGAGAATAGGAGACGTAGGACTACTCCT
AGGCATGAGTTCCCCTGTCCAGGGCTTTGAGGACGACGCTGAAAGATTTG
TGGCATTTATGAGAGAAAGTGGAGCTCAGGTGGTAGAGAAGGAGTAGAAA
AATACATACTTTTTGGCGTGGATTGATTGAAAACGCGACTGCTTGTTGTA
TAAATTGATAAGGGTCTTCCGGATAATTTCCTCAACTCCTGATTACTACA
TTTCAAT
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protein sequence of rna1489

>rna1489-protein ID=rna1489-protein|Name=rna1489|organism=Nannochloropsis gaditana|type=polypeptide|length=480bp
MKAVLGCVSSLYVTAAFLGPQYRQVPSFSNGLNTWMRGRRQLIVSAADGT
SGSTSLERETLRFLNPDIVENLANQYGTPTYIYDMATLKASAKSALSFPN
AFGLTVRYAMKASPNAAILKLFNSLGLHIDASSGYEIQRAMRAGVPASHI
SLSSQELPSDFDSFVDLGVHINACSISQLQRFGERCSGGKIGLRFNPGVG
SGGTGKTNVGGPSSAFGIWHELLPEVKRVVAEHKLQVVRVHTHIGSGSDP
AVWQNVAALSLDLVREFPQVETLNLGGGYKVGRMRQEQSTDLAKIGAPVK
EKFEDFALETGRKLHLEIEPGTFLVANAGALVCRVQDKTSTSAHTFLKLD
AGMTEVLRPSLYGAQHPLVVIPKDRTRADRAAYYVVVGHCCESGDLLTPA
PGEADTVSERELTSAEIGDLMVVEGSGAYCAGMSTKNYNSFPEAPEVMLA
PDGALYLIRRRQTLEQALQNELDLPTSALA
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mRNA from alignment at CM002457.1:758407..760295+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1489 ID=rna1489|Name=rna1489|organism=Nannochloropsis gaditana|type=mRNA|length=1889bp|location=Sequence derived from alignment at CM002457.1:758407..760295+ (Nannochloropsis gaditana)
CATAAATGCTGTTCTGAACATTTTTCTCCCaactttctcctccttgtcct
cgcctCATTTATCTGACGCTCTGTCCAagcggatcggaacggaggGGGCT
GTCAAGTCTTCGGAGCGCAGCCTGCTTGGTTTACGGGACGGGAAAGGCTC
CTCCGCGTATCGAAAACACGCGAAGGTATGCGCGGATCATTTTACCGTCG
ATGGAGGTGACCTGTCGGCGACGTACACAGCATGTTGCTGTCGCAACTCT
TTCTTTCATCTCAATCTCGTCTCGTAGCTTCCTGacccttcctacctccc
ctcgctccaaCACAGGAAACAGCTCACCCGTGTCCTTGTCTCACCACTTG
CCCTTTGAGCCTCACAGTACATGTCATGAAGGCTGTTCTAGGCTGCGTCA
GTTCTTTGTACGTAACGGCGGCCTTTTTGGGTCCTCAATACCGACAAGTA
CCGTCCTTCTCTAACGGACTCAACACCTGGATGAGAGGTAGACGGCAGCT
GATCGTCTCGGCTGCAGACGGCACCAGCGGATCAACGTCTCTCGAACGAG
AGACTTTACGCTTTTTAAACCCTGACATAGTTGAAAACTTGGCGAATCAG
TATGGCACTCCAACCTATATCTACGACATGGCAACCCTCAAAGCGAGTGC
GAAAAgtgctctctccttccccaatGCCTTCGGCTTGACAGTTCGATACG
CAATGAAAGCAAGCCCTAATGCAGCTATTCTTAAGCTTTTTAATAGCTTG
GGCCTGCATATAGACGCTTCTTCAGGGTATGAAATACAGCGGGCAATGCG
TGCTGGTGTGCCCGCCTCGCACATCAGCTTGTCTTCGCAGGAATTGCCGT
CCGACTTTGACAGCTTCGTTGACCTAGGGGTCCATATCAATGCTTGCTCC
ATCTCCCAGCTTCAGCGATTTGGAGAGAGGTGTTCTGGTGGGAAAATTGG
GCTGCGGTTCAACCCTGGGGTGGGTTCGGGCGGGACCGGCAAGACAAACG
TAGGGggcccttcttccgcctttGGCATTTGGCACGAGCTGCTGCCAGAG
GTCAAGCGAGTCGTGGCCGAGCACAAGCTCCAGGTTGTGCGCGTCCACAC
GCACATTGGGTCGGGCTCAGATCCTGCAGTGTGGCAAAACGTGGCCGCCT
TGTCGCTGGACTTAGTCCGAGAGTTCCCGCAGGTGGAGACTCTTAACCTG
GGCGGGGGATACAAGGTAGGCCGGATGCGGCAAGAACAGTCCACCGACCT
GGCTAAGATTGGTGCACCAGTAAAAGAAAAGTTCGAGGACTTCGCCCTGG
AGACAGGGCGAAAGCTGCACCTGGAGATTGAGCCTGGGACATTCTTGGTT
GCGAACGCCGGGGCCCTTGTCTGTCGGGTGCAAGACAAGACAAGCACCAG
CGCCCACACTTTTTTAAAATTGGATGCTGGCATGACTGAGGTCTTACGCC
CTTCCTTGTACGGGGCGCAGCATCCCTTAGTCGTCATCCCCAAGGACCGC
ACTCGTGCCGACCGAGCAGCATATTACGTGGTGGTAGGTCACTGCTGTGA
GTCGGGCGACCTTCTCACTCCTGCACCTGGCGAGGCCGACACAGTATCGG
AGCGGGAGCTAACTTCCGCAGAAATCGGAGACttgatggtggtggaaggc
TCAGGCGCATATTGTGCAGGGATGAGCACCAAGAACTACAATTCTTTTCC
AGAAGCTCCAGAGGTCATGCTCGCCCCAGACGGCGCCCTCTACCTTATCC
GCAGACGGCAGACTCTGGAGCAAGCACTGCAGAACGAGTTGGACTTGCCG
ACCAGCGCACTAGCTTAATCAGACATGAAATCGGAAGATACTTTTTAGAA
CACGATGAAGGAAAGTACGAGACACCTTATGCCAGATGA
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Coding sequence (CDS) from alignment at CM002457.1:758407..760295+

>rna1489 ID=rna1489|Name=rna1489|organism=Nannochloropsis gaditana|type=CDS|length=1443bp|location=Sequence derived from alignment at CM002457.1:758407..760295+ (Nannochloropsis gaditana)
ATGAAGGCTGTTCTAGGCTGCGTCAGTTCTTTGTACGTAACGGCGGCCTT
TTTGGGTCCTCAATACCGACAAGTACCGTCCTTCTCTAACGGACTCAACA
CCTGGATGAGAGGTAGACGGCAGCTGATCGTCTCGGCTGCAGACGGCACC
AGCGGATCAACGTCTCTCGAACGAGAGACTTTACGCTTTTTAAACCCTGA
CATAGTTGAAAACTTGGCGAATCAGTATGGCACTCCAACCTATATCTACG
ACATGGCAACCCTCAAAGCGAGTGCGAAAAgtgctctctccttccccaat
GCCTTCGGCTTGACAGTTCGATACGCAATGAAAGCAAGCCCTAATGCAGC
TATTCTTAAGCTTTTTAATAGCTTGGGCCTGCATATAGACGCTTCTTCAG
GGTATGAAATACAGCGGGCAATGCGTGCTGGTGTGCCCGCCTCGCACATC
AGCTTGTCTTCGCAGGAATTGCCGTCCGACTTTGACAGCTTCGTTGACCT
AGGGGTCCATATCAATGCTTGCTCCATCTCCCAGCTTCAGCGATTTGGAG
AGAGGTGTTCTGGTGGGAAAATTGGGCTGCGGTTCAACCCTGGGGTGGGT
TCGGGCGGGACCGGCAAGACAAACGTAGGGggcccttcttccgcctttGG
CATTTGGCACGAGCTGCTGCCAGAGGTCAAGCGAGTCGTGGCCGAGCACA
AGCTCCAGGTTGTGCGCGTCCACACGCACATTGGGTCGGGCTCAGATCCT
GCAGTGTGGCAAAACGTGGCCGCCTTGTCGCTGGACTTAGTCCGAGAGTT
CCCGCAGGTGGAGACTCTTAACCTGGGCGGGGGATACAAGGTAGGCCGGA
TGCGGCAAGAACAGTCCACCGACCTGGCTAAGATTGGTGCACCAGTAAAA
GAAAAGTTCGAGGACTTCGCCCTGGAGACAGGGCGAAAGCTGCACCTGGA
GATTGAGCCTGGGACATTCTTGGTTGCGAACGCCGGGGCCCTTGTCTGTC
GGGTGCAAGACAAGACAAGCACCAGCGCCCACACTTTTTTAAAATTGGAT
GCTGGCATGACTGAGGTCTTACGCCCTTCCTTGTACGGGGCGCAGCATCC
CTTAGTCGTCATCCCCAAGGACCGCACTCGTGCCGACCGAGCAGCATATT
ACGTGGTGGTAGGTCACTGCTGTGAGTCGGGCGACCTTCTCACTCCTGCA
CCTGGCGAGGCCGACACAGTATCGGAGCGGGAGCTAACTTCCGCAGAAAT
CGGAGACttgatggtggtggaaggcTCAGGCGCATATTGTGCAGGGATGA
GCACCAAGAACTACAATTCTTTTCCAGAAGCTCCAGAGGTCATGCTCGCC
CCAGACGGCGCCCTCTACCTTATCCGCAGACGGCAGACTCTGGAGCAAGC
ACTGCAGAACGAGTTGGACTTGCCGACCAGCGCACTAGCTTAA
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Synonyms
Publications