rna1488, rna1488 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1488
Unique Name	rna1488
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1512
Alignment location	CM002457.1:756660..758294 +

Link to JBrowse

Properties


Property Name	Value
Product	amidases related to nicotinamidase
Orig transcript id	gnl\|cribi\|Naga_100007g93.6495.mrna
Orig protein id	gnl\|cribi\|Naga_100007g93.6495
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:756660..758294 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g93	gene1436	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1488	rna1488-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29168.1	cds1485	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:756660..758294+
coding sequence from alignment at CM002457.1:756660..758294+

mRNA sequence

>rna1488 ID=rna1488|Name=rna1488|organism=Nannochloropsis gaditana|type=mRNA|length=1512bp
ATGGGTTTGCTCCACCCGGCCGTGCGAGAACTACTTGGTGAGGCACCGGA
AATTGGGGAAGACTTGGAGGAGTTGACAGTCTCACTACTGCAATCTCTTA
TACGGAACGCATGTGTAAACTGCGGCGATGGGAGTTGTGAGGAAGTGACA
AATATACGAACCCTCGCGGCTTTTTTTGACAAGTACGGCATAAAATACCA
AGTATACCACCCGCCCCATCGCCCGAATCGTCCAAGTCTCATAGCCGAGT
ATCATGGTGGCACGGGAATTGGCCCTCGCGTAATGCTAGGTCCGGGACAT
GTTGATGTTGTCCCTGCGAATGAAAAAGCCTGGGATGTTCCGCCCTTTGA
AGCAAGATTGGTGGGGGGGGAGGTTTGGGGAAGGGGATCGTTGGACATGC
TGAACACCGTGGCAGCGCAGGCCGTCGCATTTGCCTGCTTGGCAACTTCC
CGACTTCCTATGCGCGGAACGCTCATTTTCTGTGCTGTTTCGGACGAGGA
AGCTGGAGGCGCAGACGGAGCAGGTTTCTTGATGAATGAACCAAAGCTAC
GAGATATCTTTCGAGCAGACTACTGTATGACGGAGTTCGGAGGGGCAACC
CTCCCAGATAGATACAATCGCCCCTCAAGGACATATTATCACGTCAGCGG
GGAAAAGGGAACGGCAACAATTAACGTAGTCTGCAAAGGAAGGCCCGGTC
ATGGCTCTTTGCCAAAAAGTTGCGATAATGCCTTGGTGAAGGCCGCGGAG
GTGGTGAGGTGCTTAGCCAACTACTGGTCCCCCACCATTATTACGCCCGA
ATGGCGCAATATCATGGCGGCTTCTGATGCTCCTTGGATCGTTCGCACCT
GTCTCACCAGTGCTTGGTTTGCTCCCGCAATTATTCGGCTCTTGCTTCTT
TTAGGCCACCCGCTTGGTTCCGCTGCGCACGCCTCGACCCGATTAACTCT
GAGCCCGAACCACCTCACGGGTACACACAAGAGCAACGTTGTGCCCGGGA
CCGCTGTGGTGGAAGTCGACGGTCGGCTCATGCCTGGACAGGACAAGGCT
TACCTGATTCGACAGCTAGAACGTGCACTAGGCCGGCGCCGGATGGCATC
TGGTGACTATGAAATTCGAATTCGTCATTTTTTCCCTGCCACAACAAGTC
CAGTGGATACTCCCTTGTGGAAAGCCATGGAGAAAGCGGGAAGAATGCTA
GTTGATGGCACTACGTTCGTGAATGGACTGTTGACGGGGGCCACGGATTC
ACGATTTTTTCGGCACCATTGTGGGGCGATTGCCTATGGGACGTCTCTCT
TTCAGCCCGAACTCACGCTAGACAAGCTCATGAAGTCGATTCATGGAGAC
AACGAAAGGATATCTGTGGCATCTCTTGGCATCTCGGTGCAGTATTTCGT
GCTTACCATCCTATACATGCTAGGGGCCGCAGAAGAGGCCGTGACTTTTA
GGAAAGTCAAAGCGGGAAAAGATGGCAGTCTGGGTGAAAAATTGTATATA
AGCTTAAATTGA

protein sequence of rna1488

>rna1488-protein ID=rna1488-protein|Name=rna1488|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MSAVHHDPPPSRINDAKPSQSIVQNGKATAPFALLIIDPQVDFHEGGSLA
IAGADEDAQRIKSFIETNIDQITNIYVTLDSHQLVHISHPLFWKGPQKET
PPPYTVISKEDVLCGKWSAADENLKHYVENYIKQLETTGKFQHTIWPEHC
VISTRGHCIVGPVLEGIHAWTAKTRKPIHYHWKGINALTEMYSVFQAEVP
VPGSPETEMNDDLVKQLVAEPRVLICGQALSHCVNFSVRDLMLAWPRERI
GDVGLLLGMSSPVQGFEDDAERFVAFMRESGAQVVEKE

mRNA from alignment at CM002457.1:756660..758294+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1488 ID=rna1488|Name=rna1488|organism=Nannochloropsis gaditana|type=mRNA|length=1635bp|location=Sequence derived from alignment at CM002457.1:756660..758294+ (Nannochloropsis gaditana)
CATTTTTTATTAAGATCACTTTCCTGCAATGCTTCATTGTGAAACTAAAG
ATGGCCAAAAATAAGTAAAACTAAAGAAGGCCAAAAATTAGTGCGATTTC
TGGTGTCTGACGCACCCCCAACCAATGTGCACTCAAGGGCCCCCTGGAGG
AAGAGTCTTCTTAGCCTCATAGAGAACTTCTTATCTTTAAATTACAAAAT
AGCATAGGTTTACTTCCTTTCAGTGTACCTTTTTTGAGACGTGATCTATA
CTACACCCAAGAGAAAAGCTCTCATATTTGATGTCCGCTGTCCATCATGA
TCCACCACCATCGCGAATTAACGACGCGAAACCTTCACAAAGTATTGTAC
AAAATGGCAAAGCAACTGCTCCATTTGCATTACTAATAATTGATCCCCAG
GTAAGATGAAGATTTACAGTCATCCACGCTGCCATCGGCGAGCTAACTTT
GCACATTTCTGTATTAGGTTGATTTTCATGAGGGCGGCTCCTTAGCGATT
GCCGGAGCAGACGAAGATGCCCAGCGTATCAAAAGCTTTATTGAGACAAA
TATTGACCAGATCACCAATATTTACGTAACATTGGACTCCCATCAGGTGA
ATTACAAGTTGAAACCTGAATCGGAGGCTTGAGAGGGTTTTCATTTTCGC
TTTTCAAGATGCAACTTACCTGCTTATGTTCCTATACACCATAGCTCGTT
CACATCAGCCATCCCTTGTTTTGGAAAGGCCCTCAAAAGGAAACGCCTCC
ACCTTACACTGTCATATCAAAAGAAGATGTGTTGTGTGGAAAGTGGTCAG
CAGCCGATGAGAATTTGAAGCACTACGTTGAAAACTACATAAAGCAACTT
GAGACCACAGGCAAGTTTCAGCACACTATCTGGCCTGAGCATTGCGTCAT
TAGCACTCGAGGTCATTGTATAGTGGGTCCAGTGCTTGAAGGTGAGTTCA
GACAAATCTTTCAACCCCTGTATCATTTCAGCAAGATAAGTATCGGGGAA
ACTAAGAATGTGTGTGAAATATAATGCACTATGGGGAAGCATGGATCTAC
GCGTACATATGTCAAATGAGGACTTGGTCGAAATGCGGGGCGAAGTCTCT
TGTTACTTTTATCATTCTTTGGCTCTAATGCGTCGAACACTCTTCAATAA
TCAGGCATTCATGCTTGGACAGCCAAGACGCGTAAACCCATACACTACCA
TTGGAAAGGTATTAACGCTCTCACAGAGATGTACAGCGTCTTTCAAGCAG
AAGTCCCGGTACCGGGCTCTCCCGAGACCGAAATGAATGACGATCTTGTG
AAACAGCTGGTAGCAGAGCCCCGAGTACTGATTTGTGGACAGGCGCTTTC
CCATTGCGTCAATTTCTCTGTGAGGGATCTCATGTTAGCATGGCCCCGTG
AGAGAATAGGAGACGTAGGACTACTCCTAGGCATGAGTTCCCCTGTCCAG
GGCTTTGAGGACGACGCTGAAAGATTTGTGGCATTTATGAGAGAAAGTGG
AGCTCAGGTGGTAGAGAAGGAGTAGAAAAATACATACTTTTTGGCGTGGA
TTGATTGAAAACGCGACTGCTTGTTGTATAAATTGATAAGGGTCTTCCGG
ATAATTTCCTCAACTCCTGATTACTACATTTCaat

Coding sequence (CDS) from alignment at CM002457.1:756660..758294+

>rna1488 ID=rna1488|Name=rna1488|organism=Nannochloropsis gaditana|type=CDS|length=3468bp|location=Sequence derived from alignment at CM002457.1:756660..758294+ (Nannochloropsis gaditana)
ATGTCCGCTGTCCATCATGATCCACCACCATCGCGAATTAACGACGCGAA
ACCTTCACAAAGTATTGTACAAAATGGCAAAGCAACTGCTCCATTTGCAT
TACTAATAATTGATCCCCAGGTTGATTTTCATGAGGGCGGCTCCTTAGCG
ATTGCCGGAGCAGACGAAGATGCCCAGCGTATCAAAAGCTTTATTGAGAC
AAATATTGACCAGATCACCAATATTTACGTAACATTGGACTCCCATCAGC
TCGTTCACATCAGCCATCCCTTGTTTTGGAAAGGCCCTCAAAAGGAAACG
CCTCCACCTTACACTGTCATATCAAAAGAAGATGTGTTGTGTGGAAAGTG
GTCAGCAGCCGATGAGAATTTGAAGCACTACGTTGAAAACTACATAAAGC
AACTTGAGACCACAGGCAAGTTTCAGCACACTATCTGGCCTGAGCATTGC
GTCATTAGCACTCGAGGTCATTGTATAGTGGGTCCAGTGCTTGAAGGCAT
TCATGCTTGGACAGCCAAGACGCGTAAACCCATACACTACCATTGGAAAG
GTATTAACGCTCTCACAGAGATGTACAGCGTCTTTCAAGCAGAAGTCCCG
GTACCGGGCTCTCCCGAGACCGAAATGAATGACGATCTTGTGAAACAGCT
GGTAGCAGAGCCCCGAGTACTGATTTGTGGACAGGCGCTTTCCCATTGCG
TCAATTTCTCTGTGAGGGATCTCATGTTAGCATGGCCCCGTGAGAGAATA
GGAGACGTAGGACTACTCCTAGGCATGAGTTCCCCTGTCCAGGGCTTTGA
GGACGACGCTGAAAGATTTGTGGCATTTATGAGAGAAAGTGGAGCTCAGG
TGGTAGAGAAGGAGTAGATGTCCGCTGTCCATCATGATCCACCACCATCG
CGAATTAACGACGCGAAACCTTCACAAAGTATTGTACAAAATGGCAAAGC
AACTGCTCCATTTGCATTACTAATAATTGATCCCCAGGTTGATTTTCATG
AGGGCGGCTCCTTAGCGATTGCCGGAGCAGACGAAGATGCCCAGCGTATC
AAAAGCTTTATTGAGACAAATATTGACCAGATCACCAATATTTACGTAAC
ATTGGACTCCCATCAGCTCGTTCACATCAGCCATCCCTTGTTTTGGAAAG
GCCCTCAAAAGGAAACGCCTCCACCTTACACTGTCATATCAAAAGAAGAT
GTGTTGTGTGGAAAGTGGTCAGCAGCCGATGAGAATTTGAAGCACTACGT
TGAAAACTACATAAAGCAACTTGAGACCACAGGCAAGTTTCAGCACACTA
TCTGGCCTGAGCATTGCGTCATTAGCACTCGAGGTCATTGTATAGTGGGT
CCAGTGCTTGAAGGCATTCATGCTTGGACAGCCAAGACGCGTAAACCCAT
ACACTACCATTGGAAAGGTATTAACGCTCTCACAGAGATGTACAGCGTCT
TTCAAGCAGAAGTCCCGGTACCGGGCTCTCCCGAGACCGAAATGAATGAC
GATCTTGTGAAACAGCTGGTAGCAGAGCCCCGAGTACTGATTTGTGGACA
GGCGCTTTCCCATTGCGTCAATTTCTCTGTGAGGGATCTCATGTTAGCAT
GGCCCCGTGAGAGAATAGGAGACGTAGGACTACTCCTAGGCATGAGTTCC
CCTGTCCAGGGCTTTGAGGACGACGCTGAAAGATTTGTGGCATTTATGAG
AGAAAGTGGAGCTCAGGTGGTAGAGAAGGAGTAGATGTCCGCTGTCCATC
ATGATCCACCACCATCGCGAATTAACGACGCGAAACCTTCACAAAGTATT
GTACAAAATGGCAAAGCAACTGCTCCATTTGCATTACTAATAATTGATCC
CCAGGTTGATTTTCATGAGGGCGGCTCCTTAGCGATTGCCGGAGCAGACG
AAGATGCCCAGCGTATCAAAAGCTTTATTGAGACAAATATTGACCAGATC
ACCAATATTTACGTAACATTGGACTCCCATCAGCTCGTTCACATCAGCCA
TCCCTTGTTTTGGAAAGGCCCTCAAAAGGAAACGCCTCCACCTTACACTG
TCATATCAAAAGAAGATGTGTTGTGTGGAAAGTGGTCAGCAGCCGATGAG
AATTTGAAGCACTACGTTGAAAACTACATAAAGCAACTTGAGACCACAGG
CAAGTTTCAGCACACTATCTGGCCTGAGCATTGCGTCATTAGCACTCGAG
GTCATTGTATAGTGGGTCCAGTGCTTGAAGGCATTCATGCTTGGACAGCC
AAGACGCGTAAACCCATACACTACCATTGGAAAGGTATTAACGCTCTCAC
AGAGATGTACAGCGTCTTTCAAGCAGAAGTCCCGGTACCGGGCTCTCCCG
AGACCGAAATGAATGACGATCTTGTGAAACAGCTGGTAGCAGAGCCCCGA
GTACTGATTTGTGGACAGGCGCTTTCCCATTGCGTCAATTTCTCTGTGAG
GGATCTCATGTTAGCATGGCCCCGTGAGAGAATAGGAGACGTAGGACTAC
TCCTAGGCATGAGTTCCCCTGTCCAGGGCTTTGAGGACGACGCTGAAAGA
TTTGTGGCATTTATGAGAGAAAGTGGAGCTCAGGTGGTAGAGAAGGAGTA
GATGTCCGCTGTCCATCATGATCCACCACCATCGCGAATTAACGACGCGA
AACCTTCACAAAGTATTGTACAAAATGGCAAAGCAACTGCTCCATTTGCA
TTACTAATAATTGATCCCCAGGTTGATTTTCATGAGGGCGGCTCCTTAGC
GATTGCCGGAGCAGACGAAGATGCCCAGCGTATCAAAAGCTTTATTGAGA
CAAATATTGACCAGATCACCAATATTTACGTAACATTGGACTCCCATCAG
CTCGTTCACATCAGCCATCCCTTGTTTTGGAAAGGCCCTCAAAAGGAAAC
GCCTCCACCTTACACTGTCATATCAAAAGAAGATGTGTTGTGTGGAAAGT
GGTCAGCAGCCGATGAGAATTTGAAGCACTACGTTGAAAACTACATAAAG
CAACTTGAGACCACAGGCAAGTTTCAGCACACTATCTGGCCTGAGCATTG
CGTCATTAGCACTCGAGGTCATTGTATAGTGGGTCCAGTGCTTGAAGGCA
TTCATGCTTGGACAGCCAAGACGCGTAAACCCATACACTACCATTGGAAA
GGTATTAACGCTCTCACAGAGATGTACAGCGTCTTTCAAGCAGAAGTCCC
GGTACCGGGCTCTCCCGAGACCGAAATGAATGACGATCTTGTGAAACAGC
TGGTAGCAGAGCCCCGAGTACTGATTTGTGGACAGGCGCTTTCCCATTGC
GTCAATTTCTCTGTGAGGGATCTCATGTTAGCATGGCCCCGTGAGAGAAT
AGGAGACGTAGGACTACTCCTAGGCATGAGTTCCCCTGTCCAGGGCTTTG
AGGACGACGCTGAAAGATTTGTGGCATTTATGAGAGAAAGTGGAGCTCAG
GTGGTAGAGAAGGAGTAG

Synonyms

Publications