rna1487, rna1487 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1487
Unique Name	rna1487
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	468
Alignment location	CM002457.1:754709..756391 -

Link to JBrowse

Properties


Property Name	Value
Product	peptidase
Orig transcript id	gnl\|cribi\|Naga_100007g94.6519.mrna
Orig protein id	gnl\|cribi\|Naga_100007g94.6519
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:754709..756391 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g94	gene1435	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1487	rna1487-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29192.1	cds1484	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:754709..756391-
coding sequence from alignment at CM002457.1:754709..756391-

mRNA sequence

>rna1487 ID=rna1487|Name=rna1487|organism=Nannochloropsis gaditana|type=mRNA|length=468bp
ATGATAAAGGGATGTGAGTGCTTTTTGGACATCACGTTGACCTCCACGCT
GACTTTACGGCCGGCGAGTGGCAGCGGCAAAGTATGGACCAAGTTCAGGT
TGATGCTGATGCGTCAAGTCCTGGGGCCCGCAATCCTCGATATCATCCTC
GATCTTCGCTCGGATGCCTTATCCCCCAAATCATGTCGCCAGAGGCCCAG
CCGAGACGAAGCTGCAACCGCGCTACCAGTTTTCATTTCGGCGCAGCGAC
ATCGGCTCGCGAGGCCTCATTACATCATCACAATCGGTACTCAGGGGCAA
CATGCAGGAACGGATGTAATGTGCATAAATTTAATCTCATTTTCAAATTT
GTATGATCTTCTTAACATCGTCTTAAGCATTGATAAGAATGTTCAATCAA
TACTCAGCGGACGGTTCCTAGGTAGGGTTGGCGCTGCGAGAGCAAGCATT
GAAGGGGAACCAAGATGA

protein sequence of rna1487

>rna1487-protein ID=rna1487-protein|Name=rna1487|organism=Nannochloropsis gaditana|type=polypeptide|length=503bp
MGLLHPAVRELLGEAPEIGEDLEELTVSLLQSLIRNACVNCGDGSCEEVT
NIRTLAAFFDKYGIKYQVYHPPHRPNRPSLIAEYHGGTGIGPRVMLGPGH
VDVVPANEKAWDVPPFEARLVGGEVWGRGSLDMLNTVAAQAVAFACLATS
RLPMRGTLIFCAVSDEEAGGADGAGFLMNEPKLRDIFRADYCMTEFGGAT
LPDRYNRPSRTYYHVSGEKGTATINVVCKGRPGHGSLPKSCDNALVKAAE
VVRCLANYWSPTIITPEWRNIMAASDAPWIVRTCLTSAWFAPAIIRLLLL
LGHPLGSAAHASTRLTLSPNHLTGTHKSNVVPGTAVVEVDGRLMPGQDKA
YLIRQLERALGRRRMASGDYEIRIRHFFPATTSPVDTPLWKAMEKAGRML
VDGTTFVNGLLTGATDSRFFRHHCGAIAYGTSLFQPELTLDKLMKSIHGD
NERISVASLGISVQYFVLTILYMLGAAEEAVTFRKVKAGKDGSLGEKLYI
SLN

mRNA from alignment at CM002457.1:754709..756391-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1487 ID=rna1487|Name=rna1487|organism=Nannochloropsis gaditana|type=mRNA|length=1683bp|location=Sequence derived from alignment at CM002457.1:754709..756391- (Nannochloropsis gaditana)
ATGGGTTTGCTCCACCCGGCCGTGCGAGAACTACTTGGTGAGGCACCGGA
AATTGGGGAAGACTTGGAGGAGTTGACAGTCTCACTACTGCAATCTCTTA
TACGGAACGCATGTGTAAACTGCGGCGATGGGAGTTGTGAGGAAGTGACA
AATATACGAACCCTCGCGGCTTTTTTTGACAAGTACGGCATAAAATACCA
AGTATACCACCCGCCCCATCGCCCGAATCGTCCAAGTCTCATAGCCGAGT
ATCATGGTGGCACGGGAATTGGCCCTCGCGTAATGCTAGGTCCGGGACAT
GTTGATGTTGTCCCTGCGAATGAAAAAGCCTGGGATGTTCCGCCCTTTGA
AGCAAGATTGGTGGGGGGGGAGGTTTGGGGAAGGGGATCGTTGGACATGC
TGAACACCGTGGCAGCGCAGGCCGTCGCATTTGCCTGCTTGGCAACTTCC
CGACTTCCTATGCGCGGAACGCTCATTTTCTGTGCTGTTTCGGACGAGGA
AGCTGGAGGCGCAGACGGAGCAGGTTTCTTGATGAATGGTAGGATTGGAG
GAAGAGAAATATTTTTGCAAAGGAATTTCCACAAGGTTTGCTGCAAGTGG
ACTTATCAAGATTTCTCACGTAAATGTTTTTCTTGCCACGGTCACTGACC
CGACAGAACCAAAGCTACGAGATATCTTTCGAGCAGACTACTGTATGACG
GAGTTCGGAGGGGCAACCCTCCCAGATAGATACAATCGCCCCTCAAGGAC
ATATTATCACGTCAGCGGGGAAAAGGGAACGGCAACAATTAACGTAGTCT
GCAAAGGAAGGCCCGGTCATGGCTCTTTGCCAAAAAGTTGCGATAATGCC
TTGGTGAAGGCCGCGGAGGTGGTGAGGTGCTTAGCCAACTACTGGTCCCC
CACCATTATTACGCCCGAATGGCGCAATATCATGGCGGCTTCTGATGCTC
CTTGGATCGTTCGCACCTGTCTCACCAGTGCTTGGTTTGCTCCCGCAATT
ATTCGGCTCTTGCTTCTTTTAGGCCACCCGCTTGGTTCCGCTGCGCACGC
CTCGACCCGATTAACTCTGAGCCCGAACCACCTCACGGGTACACACAAGA
GCAACGTTGTGCCCGGGACCGCTGTGGTGGAAGTCGACGGTCGGCTCATG
CCTGGACAGGACAAGGCTTACCTGATTCGACAGCTAGAACGTGCACTAGG
CCGGCGCCGGATGGCATCTGGTGACTATGAAATTCGAATTCGTCATTTTT
TCCCTGCCACAACAAGTCCAGTGGATACTCCCTTGTGGAAAGCCATGGAG
AAAGCGGGAAGAATGCTAGTTGATGGCACTACGTTCGTGAATGGACTGTT
GACGGGGGCCACGGATTCACGATTTTTTCGGCACCATTGTGGGGCGATTG
CCTATGGGACGTCTCTCTTTCAGCCCGAACTCACGCTAGACAAGCTCATG
AAGTCGATTCATGGAGACAACGAAAGGATATCTGTGGCATCTCTTGGCAT
CTCGGTGCAGTATTTCGTGCTTACCATCCTATACATGCTAGGGGCCGCAG
AAGAGGCGTCATGACGATAGAGAAAGTGGACCGTTAGTAGAAATTGCAGG
TTTGTAAAAGCGTGACTTTTAGGAAAGTCAAAGCGGGAAAAGATGGCAGT
CTGGGTGAAAAATTGTATATAAGCTTAAATTGA

Coding sequence (CDS) from alignment at CM002457.1:754709..756391-

>rna1487 ID=rna1487|Name=rna1487|organism=Nannochloropsis gaditana|type=CDS|length=4536bp|location=Sequence derived from alignment at CM002457.1:754709..756391- (Nannochloropsis gaditana)
CGTGACTTTTAGGAAAGTCAAAGCGGGAAAAGATGGCAGTCTGGGTGAAA
AATTGTATATAAGCTTAAATTGAAACCAAAGCTACGAGATATCTTTCGAG
CAGACTACTGTATGACGGAGTTCGGAGGGGCAACCCTCCCAGATAGATAC
AATCGCCCCTCAAGGACATATTATCACGTCAGCGGGGAAAAGGGAACGGC
AACAATTAACGTAGTCTGCAAAGGAAGGCCCGGTCATGGCTCTTTGCCAA
AAAGTTGCGATAATGCCTTGGTGAAGGCCGCGGAGGTGGTGAGGTGCTTA
GCCAACTACTGGTCCCCCACCATTATTACGCCCGAATGGCGCAATATCAT
GGCGGCTTCTGATGCTCCTTGGATCGTTCGCACCTGTCTCACCAGTGCTT
GGTTTGCTCCCGCAATTATTCGGCTCTTGCTTCTTTTAGGCCACCCGCTT
GGTTCCGCTGCGCACGCCTCGACCCGATTAACTCTGAGCCCGAACCACCT
CACGGGTACACACAAGAGCAACGTTGTGCCCGGGACCGCTGTGGTGGAAG
TCGACGGTCGGCTCATGCCTGGACAGGACAAGGCTTACCTGATTCGACAG
CTAGAACGTGCACTAGGCCGGCGCCGGATGGCATCTGGTGACTATGAAAT
TCGAATTCGTCATTTTTTCCCTGCCACAACAAGTCCAGTGGATACTCCCT
TGTGGAAAGCCATGGAGAAAGCGGGAAGAATGCTAGTTGATGGCACTACG
TTCGTGAATGGACTGTTGACGGGGGCCACGGATTCACGATTTTTTCGGCA
CCATTGTGGGGCGATTGCCTATGGGACGTCTCTCTTTCAGCCCGAACTCA
CGCTAGACAAGCTCATGAAGTCGATTCATGGAGACAACGAAAGGATATCT
GTGGCATCTCTTGGCATCTCGGTGCAGTATTTCGTGCTTACCATCCTATA
CATGCTAGGGGCCGCAGAAGAGGCATGGGTTTGCTCCACCCGGCCGTGCG
AGAACTACTTGGTGAGGCACCGGAAATTGGGGAAGACTTGGAGGAGTTGA
CAGTCTCACTACTGCAATCTCTTATACGGAACGCATGTGTAAACTGCGGC
GATGGGAGTTGTGAGGAAGTGACAAATATACGAACCCTCGCGGCTTTTTT
TGACAAGTACGGCATAAAATACCAAGTATACCACCCGCCCCATCGCCCGA
ATCGTCCAAGTCTCATAGCCGAGTATCATGGTGGCACGGGAATTGGCCCT
CGCGTAATGCTAGGTCCGGGACATGTTGATGTTGTCCCTGCGAATGAAAA
AGCCTGGGATGTTCCGCCCTTTGAAGCAAGATTGGTGGGGGGGGAGGTTT
GGGGAAGGGGATCGTTGGACATGCTGAACACCGTGGCAGCGCAGGCCGTC
GCATTTGCCTGCTTGGCAACTTCCCGACTTCCTATGCGCGGAACGCTCAT
TTTCTGTGCTGTTTCGGACGAGGAAGCTGGAGGCGCAGACGGAGCAGGTT
TCTTGATGAATGCGTGACTTTTAGGAAAGTCAAAGCGGGAAAAGATGGCA
GTCTGGGTGAAAAATTGTATATAAGCTTAAATTGAAACCAAAGCTACGAG
ATATCTTTCGAGCAGACTACTGTATGACGGAGTTCGGAGGGGCAACCCTC
CCAGATAGATACAATCGCCCCTCAAGGACATATTATCACGTCAGCGGGGA
AAAGGGAACGGCAACAATTAACGTAGTCTGCAAAGGAAGGCCCGGTCATG
GCTCTTTGCCAAAAAGTTGCGATAATGCCTTGGTGAAGGCCGCGGAGGTG
GTGAGGTGCTTAGCCAACTACTGGTCCCCCACCATTATTACGCCCGAATG
GCGCAATATCATGGCGGCTTCTGATGCTCCTTGGATCGTTCGCACCTGTC
TCACCAGTGCTTGGTTTGCTCCCGCAATTATTCGGCTCTTGCTTCTTTTA
GGCCACCCGCTTGGTTCCGCTGCGCACGCCTCGACCCGATTAACTCTGAG
CCCGAACCACCTCACGGGTACACACAAGAGCAACGTTGTGCCCGGGACCG
CTGTGGTGGAAGTCGACGGTCGGCTCATGCCTGGACAGGACAAGGCTTAC
CTGATTCGACAGCTAGAACGTGCACTAGGCCGGCGCCGGATGGCATCTGG
TGACTATGAAATTCGAATTCGTCATTTTTTCCCTGCCACAACAAGTCCAG
TGGATACTCCCTTGTGGAAAGCCATGGAGAAAGCGGGAAGAATGCTAGTT
GATGGCACTACGTTCGTGAATGGACTGTTGACGGGGGCCACGGATTCACG
ATTTTTTCGGCACCATTGTGGGGCGATTGCCTATGGGACGTCTCTCTTTC
AGCCCGAACTCACGCTAGACAAGCTCATGAAGTCGATTCATGGAGACAAC
GAAAGGATATCTGTGGCATCTCTTGGCATCTCGGTGCAGTATTTCGTGCT
TACCATCCTATACATGCTAGGGGCCGCAGAAGAGGCATGGGTTTGCTCCA
CCCGGCCGTGCGAGAACTACTTGGTGAGGCACCGGAAATTGGGGAAGACT
TGGAGGAGTTGACAGTCTCACTACTGCAATCTCTTATACGGAACGCATGT
GTAAACTGCGGCGATGGGAGTTGTGAGGAAGTGACAAATATACGAACCCT
CGCGGCTTTTTTTGACAAGTACGGCATAAAATACCAAGTATACCACCCGC
CCCATCGCCCGAATCGTCCAAGTCTCATAGCCGAGTATCATGGTGGCACG
GGAATTGGCCCTCGCGTAATGCTAGGTCCGGGACATGTTGATGTTGTCCC
TGCGAATGAAAAAGCCTGGGATGTTCCGCCCTTTGAAGCAAGATTGGTGG
GGGGGGAGGTTTGGGGAAGGGGATCGTTGGACATGCTGAACACCGTGGCA
GCGCAGGCCGTCGCATTTGCCTGCTTGGCAACTTCCCGACTTCCTATGCG
CGGAACGCTCATTTTCTGTGCTGTTTCGGACGAGGAAGCTGGAGGCGCAG
ACGGAGCAGGTTTCTTGATGAATGCGTGACTTTTAGGAAAGTCAAAGCGG
GAAAAGATGGCAGTCTGGGTGAAAAATTGTATATAAGCTTAAATTGAAAC
CAAAGCTACGAGATATCTTTCGAGCAGACTACTGTATGACGGAGTTCGGA
GGGGCAACCCTCCCAGATAGATACAATCGCCCCTCAAGGACATATTATCA
CGTCAGCGGGGAAAAGGGAACGGCAACAATTAACGTAGTCTGCAAAGGAA
GGCCCGGTCATGGCTCTTTGCCAAAAAGTTGCGATAATGCCTTGGTGAAG
GCCGCGGAGGTGGTGAGGTGCTTAGCCAACTACTGGTCCCCCACCATTAT
TACGCCCGAATGGCGCAATATCATGGCGGCTTCTGATGCTCCTTGGATCG
TTCGCACCTGTCTCACCAGTGCTTGGTTTGCTCCCGCAATTATTCGGCTC
TTGCTTCTTTTAGGCCACCCGCTTGGTTCCGCTGCGCACGCCTCGACCCG
ATTAACTCTGAGCCCGAACCACCTCACGGGTACACACAAGAGCAACGTTG
TGCCCGGGACCGCTGTGGTGGAAGTCGACGGTCGGCTCATGCCTGGACAG
GACAAGGCTTACCTGATTCGACAGCTAGAACGTGCACTAGGCCGGCGCCG
GATGGCATCTGGTGACTATGAAATTCGAATTCGTCATTTTTTCCCTGCCA
CAACAAGTCCAGTGGATACTCCCTTGTGGAAAGCCATGGAGAAAGCGGGA
AGAATGCTAGTTGATGGCACTACGTTCGTGAATGGACTGTTGACGGGGGC
CACGGATTCACGATTTTTTCGGCACCATTGTGGGGCGATTGCCTATGGGA
CGTCTCTCTTTCAGCCCGAACTCACGCTAGACAAGCTCATGAAGTCGATT
CATGGAGACAACGAAAGGATATCTGTGGCATCTCTTGGCATCTCGGTGCA
GTATTTCGTGCTTACCATCCTATACATGCTAGGGGCCGCAGAAGAGGCAT
GGGTTTGCTCCACCCGGCCGTGCGAGAACTACTTGGTGAGGCACCGGAAA
TTGGGGAAGACTTGGAGGAGTTGACAGTCTCACTACTGCAATCTCTTATA
CGGAACGCATGTGTAAACTGCGGCGATGGGAGTTGTGAGGAAGTGACAAA
TATACGAACCCTCGCGGCTTTTTTTGACAAGTACGGCATAAAATACCAAG
TATACCACCCGCCCCATCGCCCGAATCGTCCAAGTCTCATAGCCGAGTAT
CATGGTGGCACGGGAATTGGCCCTCGCGTAATGCTAGGTCCGGGACATGT
TGATGTTGTCCCTGCGAATGAAAAAGCCTGGGATGTTCCGCCCTTTGAAG
CAAGATTGGTGGGGGGGGAGGTTTGGGGAAGGGGATCGTTGGACATGCTG
AACACCGTGGCAGCGCAGGCCGTCGCATTTGCCTGCTTGGCAACTTCCCG
ACTTCCTATGCGCGGAACGCTCATTTTCTGTGCTGTTTCGGACGAGGAAG
CTGGAGGCGCAGACGGAGCAGGTTTCTTGATGAATG

Synonyms

Publications