rna1483, rna1483 (mRNA) Nannochloropsis gaditana

Overview
Namerna1483
Unique Namerna1483
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length813
Alignment locationCM002457.1:745331..746242 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g98.6440.mrna
Orig protein idgnl|cribi|Naga_100007g98.6440
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:745331..746242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g98gene1431Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1483rna1483-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29113.1cds1480Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1483 ID=rna1483|Name=rna1483|organism=Nannochloropsis gaditana|type=mRNA|length=813bp
ATGAAGGCTTGTGTCATAACAACTTCTAGTTACATTTCAACGAGGTGGAG
TTCTCCGTCGAATGTTGATTTTCATCATGCGGGGGGAGGCGCTCCTGTTC
AAGGTTTCGAACATTTAAAGCAGCAGGACAACGCAGAATTTGGAGACGAT
TTGAGAACACACACATCCAGCACAGAGCCCTGGCTGACTCATGAATACAT
TTTGCCCGACATCGTAGACGGGGAAAAAGTCGAGGAAACTTCGTGTCTGA
GCCTGGATCTCAGGGCTTTAGCAGAAGGGCTGTGGCATTTGCCTGTAGAT
ATCCGGCTTGGCGTGGATTCCACCTTGGCGGAAGGAATCCCTCATCAATC
AGATCATTCTGCGCGTTTAGAGGAGGATGCGCGAGAACAAGTGGAAAAGA
TCGAGAAATCTTCGCTGAGAAATGTGGCCCTCGATGGAGGCTTAAAACAG
AGATTGATCTTAAATCCTTCGACAAGTTGTGACTTCCCAGCGCATTCTCC
AGAGCATGCTGACCTGCCTCTCGATGTGCTTTTAGGTCTAAGTCTGTCGA
CTGCTCATGTCAAAGACGAGATTCCTCTTACTTCTAAGCCCTCGGCCCAG
CCTGATGACGTCCTCTACAAGGGCTTACAGGCATCTGGAAACGAGAAACA
AAAGATGTATAAGGCTGACGGATATGACTGCGTTGCGAAAATAGCGGCGA
GGAAAGAAGACGAGGAAAGTGTCTTGGACGCCCTACTACAGCAAGGGCAT
GAGGAAATACAACCTTCCTCGGCACGACTTTCGCCATTTAAACTAGATGG
AGGCGGCTATTGA
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protein sequence of rna1483

>rna1483-protein ID=rna1483-protein|Name=rna1483|organism=Nannochloropsis gaditana|type=polypeptide|length=303bp
MSRNEYEPIINTPGVSWGIESGMLNNDKLYQKDWDKSCCDSTGARRDDSA
HLERARRLTWVFLGPAVILLIAIAGTVAFLSQNRAVSSSPTRRSFPSLGA
FGPSGDSKVLPSDESTPVQGGSATSATFASEGEAQTVSEGTPLRHPGTGM
NASTVLSCLEEMCQPFAEQLGKSWHELANVNLLRCLASSAFNKTTATTCF
QSAKPSKLRDDLVACAGCNGCVELRNQTSVDRACAKYNAWAAKHGTETDL
TRPEEYQEAAALAAFGKPRAETPGEGRGSDADSLAADLPTSLKEKFCSQY
WCP
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mRNA from alignment at CM002457.1:745331..746242+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1483 ID=rna1483|Name=rna1483|organism=Nannochloropsis gaditana|type=mRNA|length=912bp|location=Sequence derived from alignment at CM002457.1:745331..746242+ (Nannochloropsis gaditana)
ATGTCTCGCAATGAGTATGAGCCCATCATCAACACGCCAGGAGTGTCGTG
GGGAATCGAAAGCGGCATGTTGAACAATGACAAGCTTTATCAAAAGGACT
GGGACAAGTCTTGCTGTGATTCGACAGGTGCTCGCAGGGATGACTCCGCT
CACTTAGAAAGAGCTCGTCGTCTCACTTGGGTATTTTTGGGCCCTGCTGT
CATTTTATTAATTGCGATCGCCGGCACAGTAGCTTTTTTGTCTCAAAACC
GGGCTGTGTCTTCATCACCTACGAGAcgttcttttccctctttgggTGCG
TTCGGGCCCTCTGGAGATTCAAAGGTACTGCCTTCGGATGAGAGCACGCC
AGTACAAGGAGGATCAGCTACAAGTGCAACATTTGCctcggaaggagaag
ctcaAACGGTCTCAGAGGGGACTCCCCTGCGGCACCCAGGAACCGGTATG
AATGCGAGTACAGTTCTGTCCTGCCTCGAGGAGATGTGTCAGCCTTTTGC
GGAGCAACTGGGAAAGAGTTGGCACGAGCTTGCAAACGTAAATCTTTTAC
GCTGCTTGGCGTCATCAGCCTTTAACAAAACGACGGCTACAACGTGTTTT
CAATCCGCCAAACCCTCGAAGCTTCGTGATGACCTGGTGGCATGCGCAGG
CTGCAATGGCTGCGTGGAGTTGAGAAATCAGACGTCTGTCGACAGAGCAT
GCGCCAAGTACAATGCATGGGCTGCTAAACATGGCACGGAAACCGATCTC
ACGCGGCCAGAGGAGTAtcaggaggcggcggcgttAGCGGCTTTCGGGAA
GCCGCGTGCCGAGACCCCAGGAGAGGGCCGAGGCTCCGATGCGGACTCAC
TGGCGGCGGACCTGCCAACAAGCCTGAAAGAGAAATTCTGCAGTCAGTAC
TGGTGCCCTTGA
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Coding sequence (CDS) from alignment at CM002457.1:745331..746242+

>rna1483 ID=rna1483|Name=rna1483|organism=Nannochloropsis gaditana|type=CDS|length=912bp|location=Sequence derived from alignment at CM002457.1:745331..746242+ (Nannochloropsis gaditana)
ATGTCTCGCAATGAGTATGAGCCCATCATCAACACGCCAGGAGTGTCGTG
GGGAATCGAAAGCGGCATGTTGAACAATGACAAGCTTTATCAAAAGGACT
GGGACAAGTCTTGCTGTGATTCGACAGGTGCTCGCAGGGATGACTCCGCT
CACTTAGAAAGAGCTCGTCGTCTCACTTGGGTATTTTTGGGCCCTGCTGT
CATTTTATTAATTGCGATCGCCGGCACAGTAGCTTTTTTGTCTCAAAACC
GGGCTGTGTCTTCATCACCTACGAGAcgttcttttccctctttgggTGCG
TTCGGGCCCTCTGGAGATTCAAAGGTACTGCCTTCGGATGAGAGCACGCC
AGTACAAGGAGGATCAGCTACAAGTGCAACATTTGCctcggaaggagaag
ctcaAACGGTCTCAGAGGGGACTCCCCTGCGGCACCCAGGAACCGGTATG
AATGCGAGTACAGTTCTGTCCTGCCTCGAGGAGATGTGTCAGCCTTTTGC
GGAGCAACTGGGAAAGAGTTGGCACGAGCTTGCAAACGTAAATCTTTTAC
GCTGCTTGGCGTCATCAGCCTTTAACAAAACGACGGCTACAACGTGTTTT
CAATCCGCCAAACCCTCGAAGCTTCGTGATGACCTGGTGGCATGCGCAGG
CTGCAATGGCTGCGTGGAGTTGAGAAATCAGACGTCTGTCGACAGAGCAT
GCGCCAAGTACAATGCATGGGCTGCTAAACATGGCACGGAAACCGATCTC
ACGCGGCCAGAGGAGTAtcaggaggcggcggcgttAGCGGCTTTCGGGAA
GCCGCGTGCCGAGACCCCAGGAGAGGGCCGAGGCTCCGATGCGGACTCAC
TGGCGGCGGACCTGCCAACAAGCCTGAAAGAGAAATTCTGCAGTCAGTAC
TGGTGCCCTTGA
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Synonyms
Publications