rna1482, rna1482 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1482
Unique Name	rna1482
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1200
Alignment location	CM002457.1:743769..744939 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100007g99.6469.mrna
Orig protein id	gnl\|cribi\|Naga_100007g99.6469
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:743769..744939 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g99	gene1430	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1482	rna1482-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29142.1	cds1479	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:743769..744939+
coding sequence from alignment at CM002457.1:743769..744939+

mRNA sequence

>rna1482 ID=rna1482|Name=rna1482|organism=Nannochloropsis gaditana|type=mRNA|length=1200bp
CAGAGGCGCGCTTTTGAATGGAATGTTGCGCTTGCAAACAATACGGTATC
CGTGCCTTGTTTGCAGGGACATGCGCTGAGGACGAAGGGGGCGAGCGTGC
TTTCGATTTTGTTGGTGATAACGCTTCCATCGCCTTCCATGGCGTCGTCT
TGAGCACCACAATCCATCCACAGTCTAATTGTTGGCCTCTTCCACTTAGT
ATTTCAGGGCTCTAATTAACTTGTGCGAAGTGTAAACGTATGGCGTTGAA
GCGCGTTAACAAGGAGCTGCAGGACATCAGCAGGGATCCACCAGCCAACT
GTTCCGCCGGGCCCGTTGGGGATGACCTCTTCCACTGGCAGGCTACCATC
ATGGGTCCAGAGGACTCTCCGTATGCTGGCGGCGTCTACTACTTGAACAT
CCACTTTCCGGCTGATTACCCATTCAAGCCTCCCAAAGTTAATTTCACGA
CGCGTATCTATCACTGCAACATCAACGCCAACGGAGGCATCTGTCTGGAC
ATCCTCAAAGATCAGTGGAGCCCAGCCCTGACTATCTCCAAGGTTCTCCT
TTCGATCTGCTCCCTGCTCACAGATCCGAATCCTGATGATCCCCTCGTGC
CCGAGATCGCCCAGCTTTACCGCACCGACCGCAGCCGGCACGATGCCACG
GCCAGGGAATGGACAGCGAAATACGCCATGTAGCGCCACTTGTTCAGAGG
GGGGAAATGCCGCAAAAATGGCACACGGCGTTGAGGACTGAAGTTGCAGA
AATAGTGAAAAGACGGCCAAAAAGCTGTGGTCGCCAAGGAGGGGGGGCGC
AGGGACGGGAGAAACACAGGGTGTGGGGGCAGACCAGACTCCCAGTCAAA
CTGCCGAGTACTCCATACCGCTGACGCGCCCTGTTTCATTTTCCAAAGTC
TGAGGAGGATGAGCGCCAACTCCTCGTCTTGTGCAGTATCAGGTGGAACA
AAGAGAAAGAATTGGGGAGTTTGAGGACGATGTAATGTGATAGATCCCGC
GTGTACGACAGAAACTTAATCATGAAGGAGAGACGACGGAGAGGGAAGAA
AATAATTTATATTAGACTCTGCAGAAGCCGTCATGTGCTCACACATCAAC
TATGGTCTTGTTTACGCCTTGCTGTCTCGATTAGAATACCACTGTAAATT
GCAAACGGGGAAACTTTTATAAATTTCAAGCAGGAAGTGTGTAACTGTGG

protein sequence of rna1482

>rna1482-protein ID=rna1482-protein|Name=rna1482|organism=Nannochloropsis gaditana|type=polypeptide|length=270bp
MKACVITTSSYISTRWSSPSNVDFHHAGGGAPVQGFEHLKQQDNAEFGDD
LRTHTSSTEPWLTHEYILPDIVDGEKVEETSCLSLDLRALAEGLWHLPVD
IRLGVDSTLAEGIPHQSDHSARLEEDAREQVEKIEKSSLRNVALDGGLKQ
RLILNPSTSCDFPAHSPEHADLPLDVLLGLSLSTAHVKDEIPLTSKPSAQ
PDDVLYKGLQASGNEKQKMYKADGYDCVAKIAARKEDEESVLDALLQQGH
EEIQPSSARLSPFKLDGGGY

mRNA from alignment at CM002457.1:743769..744939+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1482 ID=rna1482|Name=rna1482|organism=Nannochloropsis gaditana|type=mRNA|length=1171bp|location=Sequence derived from alignment at CM002457.1:743769..744939+ (Nannochloropsis gaditana)
ATGAAGGCTTGTGTCATAACAACTTCTAGTTACATTTGTGACTTTACGTG
CGCTCCACACCACACCTGACAACTCATACTAGCAACGAGGTGGAGTTCTC
CGTCGAATGTTGATTTTCATCatgcggggggaggcgctcCTGTTCAAGGT
TTCGAACATTTAAAGCAGCAGGACAACGCAGAATTTGGAGACGATTTGAG
AACACACACATCCAGGCAGGTCAAAAAATTGAGTGAAGCGGGTGCTCTAC
CGTCTGGGCGCCGTATTGCTGCTGTGCAGGGGGATACGCTGGCTGTATGC
TCTTGTCCGCAATTCACCTAATATCTTTCCTCTTGTATTTCTGCGATATG
TTATCAGCACAGAGCCCTGGCTGACTCATGAATACATTTTGCCCGACATC
GTAGACGGGGAAAAAGTCGAGGAAACTTCGTGTCTGAGCCTGGTACGGAA
TACGCGAGGGTATGCATTGATGAGTTTGATTGCCTGAAAACTTTTGTTGC
TGATACCATCATCCTTTAATTCACAGGATCTCAGGGCTTTAGCAGAAGGG
CTGTGGCATTTGCCTGTAGATATCCGGCTTGGCGTGGATTCCACCTTGGC
GGTAAGCGCGCACTGAAGGTATCTGAGGTCCGTTCATTACATGAGCATTG
AaattcttcttctttgcttGTCCAACATCTGCGACTAGGAAGGAATCCCT
CATCAATCAGATCATTCTGCGCGTTTAGAGGAGGATGCGCGAGAACAAGT
GGAAAAGATCGAGAAATCTTCGCTGAGAAATGTGGCCCTCGATGGAGGCT
TAAAACAGAGATTGATCTTAAATCCTTCGACAAGTTGTGACTTCCCAGCG
CATTCTCCAGAGCATGCTGACCTGCCTCTCGATGTGCTTTTAGGTCTAAG
TCTGTCGACTGCTCATGTCAAAGACGAGATTCCTCTTACTTCTAAGCCCT
CGGCCCAGCCTGATGACGTCCTCTACAAGGGCTTACAGGCATCTGGAAAC
GAGAAACAAAAGATGTATAAGGCTGACGGATATGACTGCGTTGCGAAAAT
AGCGGCGAggaaagaagacgaggaaagtGTCTTGGACGCCCTACTACAGC
AAGGGCATGAGGAAATACAACCTTCCTCGGCACGACTTTCGCCATTTAAA
CTAGATGGAGGCGGCTATTGA

Coding sequence (CDS) from alignment at CM002457.1:743769..744939+

>rna1482 ID=rna1482|Name=rna1482|organism=Nannochloropsis gaditana|type=CDS|length=4065bp|location=Sequence derived from alignment at CM002457.1:743769..744939+ (Nannochloropsis gaditana)
ATGAAGGCTTGTGTCATAACAACTTCTAGTTACATTTCAACGAGGTGGAG
TTCTCCGTCGAATGTTGATTTTCATCatgcggggggaggcgctcCTGTTC
AAGGTTTCGAACATTTAAAGCAGCAGGACAACGCAGAATTTGGAGACGAT
TTGAGAACACACACATCCAGCACAGAGCCCTGGCTGACTCATGAATACAT
TTTGCCCGACATCGTAGACGGGGAAAAAGTCGAGGAAACTTCGTGTCTGA
GCCTGGATCTCAGGGCTTTAGCAGAAGGGCTGTGGCATTTGCCTGTAGAT
ATCCGGCTTGGCGTGGATTCCACCTTGGCGGAAGGAATCCCTCATCAATC
AGATCATTCTGCGCGTTTAGAGGAGGATGCGCGAGAACAAGTGGAAAAGA
TCGAGAAATCTTCGCTGAGAAATGTGGCCCTCGATGGAGGCTTAAAACAG
AGATTGATCTTAAATCCTTCGACAAGTTGTGACTTCCCAGCGCATTCTCC
AGAGCATGCTGACCTGCCTCTCGATGTGCTTTTAGGTCTAAGTCTGTCGA
CTGCTCATGTCAAAGACGAGATTCCTCTTACTTCTAAGCCCTCGGCCCAG
CCTGATGACGTCCTCTACAAGGGCTTACAGGCATCTGGAAACGAGAAACA
AAAGATGTATAAGGCTGACGGATATGACTGCGTTGCGAAAATAGCGGCGA
ggaaagaagacgaggaaagtGTCTTGGACGCCCTACTACAGCAAGGGCAT
GAGGAAATACAACCTTCCTCGGCACGACTTTCGCCATTTAAACTAGATGG
AGGCGGCTATTGAATGAAGGCTTGTGTCATAACAACTTCTAGTTACATTT
CAACGAGGTGGAGTTCTCCGTCGAATGTTGATTTTCATCatgcgggggga
ggcgctcCTGTTCAAGGTTTCGAACATTTAAAGCAGCAGGACAACGCAGA
ATTTGGAGACGATTTGAGAACACACACATCCAGCACAGAGCCCTGGCTGA
CTCATGAATACATTTTGCCCGACATCGTAGACGGGGAAAAAGTCGAGGAA
ACTTCGTGTCTGAGCCTGGATCTCAGGGCTTTAGCAGAAGGGCTGTGGCA
TTTGCCTGTAGATATCCGGCTTGGCGTGGATTCCACCTTGGCGGAAGGAA
TCCCTCATCAATCAGATCATTCTGCGCGTTTAGAGGAGGATGCGCGAGAA
CAAGTGGAAAAGATCGAGAAATCTTCGCTGAGAAATGTGGCCCTCGATGG
AGGCTTAAAACAGAGATTGATCTTAAATCCTTCGACAAGTTGTGACTTCC
CAGCGCATTCTCCAGAGCATGCTGACCTGCCTCTCGATGTGCTTTTAGGT
CTAAGTCTGTCGACTGCTCATGTCAAAGACGAGATTCCTCTTACTTCTAA
GCCCTCGGCCCAGCCTGATGACGTCCTCTACAAGGGCTTACAGGCATCTG
GAAACGAGAAACAAAAGATGTATAAGGCTGACGGATATGACTGCGTTGCG
AAAATAGCGGCGAggaaagaagacgaggaaagtGTCTTGGACGCCCTACT
ACAGCAAGGGCATGAGGAAATACAACCTTCCTCGGCACGACTTTCGCCAT
TTAAACTAGATGGAGGCGGCTATTGAATGAAGGCTTGTGTCATAACAACT
TCTAGTTACATTTCAACGAGGTGGAGTTCTCCGTCGAATGTTGATTTTCA
TCatgcggggggaggcgctcCTGTTCAAGGTTTCGAACATTTAAAGCAGC
AGGACAACGCAGAATTTGGAGACGATTTGAGAACACACACATCCAGCACA
GAGCCCTGGCTGACTCATGAATACATTTTGCCCGACATCGTAGACGGGGA
AAAAGTCGAGGAAACTTCGTGTCTGAGCCTGGATCTCAGGGCTTTAGCAG
AAGGGCTGTGGCATTTGCCTGTAGATATCCGGCTTGGCGTGGATTCCACC
TTGGCGGAAGGAATCCCTCATCAATCAGATCATTCTGCGCGTTTAGAGGA
GGATGCGCGAGAACAAGTGGAAAAGATCGAGAAATCTTCGCTGAGAAATG
TGGCCCTCGATGGAGGCTTAAAACAGAGATTGATCTTAAATCCTTCGACA
AGTTGTGACTTCCCAGCGCATTCTCCAGAGCATGCTGACCTGCCTCTCGA
TGTGCTTTTAGGTCTAAGTCTGTCGACTGCTCATGTCAAAGACGAGATTC
CTCTTACTTCTAAGCCCTCGGCCCAGCCTGATGACGTCCTCTACAAGGGC
TTACAGGCATCTGGAAACGAGAAACAAAAGATGTATAAGGCTGACGGATA
TGACTGCGTTGCGAAAATAGCGGCGAggaaagaagacgaggaaagtGTCT
TGGACGCCCTACTACAGCAAGGGCATGAGGAAATACAACCTTCCTCGGCA
CGACTTTCGCCATTTAAACTAGATGGAGGCGGCTATTGAATGAAGGCTTG
TGTCATAACAACTTCTAGTTACATTTCAACGAGGTGGAGTTCTCCGTCGA
ATGTTGATTTTCATCatgcggggggaggcgctcCTGTTCAAGGTTTCGAA
CATTTAAAGCAGCAGGACAACGCAGAATTTGGAGACGATTTGAGAACACA
CACATCCAGCACAGAGCCCTGGCTGACTCATGAATACATTTTGCCCGACA
TCGTAGACGGGGAAAAAGTCGAGGAAACTTCGTGTCTGAGCCTGGATCTC
AGGGCTTTAGCAGAAGGGCTGTGGCATTTGCCTGTAGATATCCGGCTTGG
CGTGGATTCCACCTTGGCGGAAGGAATCCCTCATCAATCAGATCATTCTG
CGCGTTTAGAGGAGGATGCGCGAGAACAAGTGGAAAAGATCGAGAAATCT
TCGCTGAGAAATGTGGCCCTCGATGGAGGCTTAAAACAGAGATTGATCTT
AAATCCTTCGACAAGTTGTGACTTCCCAGCGCATTCTCCAGAGCATGCTG
ACCTGCCTCTCGATGTGCTTTTAGGTCTAAGTCTGTCGACTGCTCATGTC
AAAGACGAGATTCCTCTTACTTCTAAGCCCTCGGCCCAGCCTGATGACGT
CCTCTACAAGGGCTTACAGGCATCTGGAAACGAGAAACAAAAGATGTATA
AGGCTGACGGATATGACTGCGTTGCGAAAATAGCGGCGAggaaagaagac
gaggaaagtGTCTTGGACGCCCTACTACAGCAAGGGCATGAGGAAATACA
ACCTTCCTCGGCACGACTTTCGCCATTTAAACTAGATGGAGGCGGCTATT
GAATGAAGGCTTGTGTCATAACAACTTCTAGTTACATTTCAACGAGGTGG
AGTTCTCCGTCGAATGTTGATTTTCATCatgcggggggaggcgctcCTGT
TCAAGGTTTCGAACATTTAAAGCAGCAGGACAACGCAGAATTTGGAGACG
ATTTGAGAACACACACATCCAGCACAGAGCCCTGGCTGACTCATGAATAC
ATTTTGCCCGACATCGTAGACGGGGAAAAAGTCGAGGAAACTTCGTGTCT
GAGCCTGGATCTCAGGGCTTTAGCAGAAGGGCTGTGGCATTTGCCTGTAG
ATATCCGGCTTGGCGTGGATTCCACCTTGGCGGAAGGAATCCCTCATCAA
TCAGATCATTCTGCGCGTTTAGAGGAGGATGCGCGAGAACAAGTGGAAAA
GATCGAGAAATCTTCGCTGAGAAATGTGGCCCTCGATGGAGGCTTAAAAC
AGAGATTGATCTTAAATCCTTCGACAAGTTGTGACTTCCCAGCGCATTCT
CCAGAGCATGCTGACCTGCCTCTCGATGTGCTTTTAGGTCTAAGTCTGTC
GACTGCTCATGTCAAAGACGAGATTCCTCTTACTTCTAAGCCCTCGGCCC
AGCCTGATGACGTCCTCTACAAGGGCTTACAGGCATCTGGAAACGAGAAA
CAAAAGATGTATAAGGCTGACGGATATGACTGCGTTGCGAAAATAGCGGC
GAggaaagaagacgaggaaagtGTCTTGGACGCCCTACTACAGCAAGGGC
ATGAGGAAATACAACCTTCCTCGGCACGACTTTCGCCATTTAAACTAGAT
GGAGGCGGCTATTGA

Synonyms

Publications