rna1479, rna1479 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1479
Unique Name	rna1479
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1906
Alignment location	CM002457.1:737380..738906 +

Link to JBrowse

Properties


Property Name	Value
Product	l-asparaginase i
Orig transcript id	gnl\|cribi\|Naga_100007g103.6518.mrna
Orig protein id	gnl\|cribi\|Naga_100007g103.6518
Gene	ASP1
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:737380..738906 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
ASP1	gene1427	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1479	rna1479-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29191.1	cds1476	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:737380..738906+
coding sequence from alignment at CM002457.1:737380..738906+

mRNA sequence

>rna1479 ID=rna1479|Name=rna1479|organism=Nannochloropsis gaditana|type=mRNA|length=1906bp
AGACACTTTATTCACGCTGTCCACTGCGTTTCGTCTCCTTCGATACTCTC
TTGTACAGGTAGGAAATTGGAATCTTCATGATATAGCAAGCTTTCGCGCG
GTAGGATTCGCACTTAGGCTGTTTCCTTTGTTCACACGCGGTAGAAGACC
AGTACGACCGGAAACTCACGGAGTAGCGATTTGTGGCGGCCTTCTGCTTT
CCCTATGCTGGCATTGTACGCAAGCATCTATGCCGGCACTTCCACTTGAG
CTCCTTATTCCTGCTGGTCTTTCCTTTGTGCTACTATTGGCCGCAGAGGC
TTTGCAGAGGCTTGTTCGCATTGAGTCGCACCCCTGGCACCCCTTTCTCA
ATTATGCTCGAATTTGCAAGTATGTCTTGTCGTGGTACATGATAAGTATT
GGCTTTACTTTGTGTAATAAATGGATATTCCGCTACTGGCGTGGGAGCGG
ATTTCCTTATCCCCTTCTCGTTACAAGCGTGCATATGATAACGAAAGTTT
TTCTAACTCGACTTGTCGATCGATGCCGCCGCGCGGAGCACCGTGTTCGA
CCACTACCCTGGAGTTTGTACTGGAAGGGCCCTGTGTCGATTGGAATATG
TACAGGGTTGGATATATCATTCAGCAACCTGAGTTTTTTGTTCATTAGTG
TGACATTTTACACCATTTTGAAGTCAGGAGCCATCCTGTGGATTCTGGTT
TGGGCTGTGATTATGCGTTTGGAACCTTTGACTTGGGAGATAGTATCTAT
ATGTGCCGCGGTAAGCTTTGGAGTGGGCCTCGCTTCTTATGGAGAGACCG
CTTTCAATTCGGCTGGCTTCGTGCTAGTGACCCTGGCCTGTGCGTCCTCC
GGGCTGCGCTGGGCTTTAACCCAACTTATGCTGGAAGGCGAATTAAATGG
CAGAGATGACTCGATGTATCGATCCGCTTTGATCGGCCAATTGAGTAGTG
GAAGAAGTGATGTTGATGGAACAGGGGGAAACGCTGACAGCGATTGCAAC
ATTCAAGGGCGTTCTGATCCTCGCGACTGCGGGCGCCATCGATGTAACAC
TGCCAGGGATCCCCCTCTGGTAGATCACGCGCACACTCCCGTCAATGGTT
CAGAGGCGCACTCTGTCTCGGTTCAACATCCACAGGCTTTTGAGATTTTA
TACCACTTAACGCCTGCAAGTGCGATTATTTGTGTCGCAGCTTTTCTAGT
TGTAGAATGGAAGTCTTGCGTCCAATCTCACGTTTTCAAGGACTTAGCCT
TACTTTTTCAGCTTCTGGCCATCCTACTAGTGGGAGGTCTCATATCTTTT
CTGCTGGTACTTACGGAGGTGAAGCTTGTGAAAATCAGCTCCAGTTTGAC
CATGAGTATGTTTGGTGCATTGAAAGAGGTAATCACAGTAGCTATCTCGA
TGGTTGTCTTCCACGACGACGTCTCACTTCTGAATGTCTTTGGACTGTTT
GTTGCCATCCTCGGAGCCATCTGTTATAAGCGCTACAAAGAAAAAGTCAG
CTCGGCAGGTTCTTCTAACGTGGCATTCGGGCGCAACCATGGTGGGAGAG
AACAGCTTCAAAGATGCTCAGCATGTTTACCTACCACATCTAGAGCTTCC
AGTATCGAAGACGACTCGTCAGAGGACGGCGAGGAAATATTGCAAGCTGT
AGGAGGGCGAGGGATGGATAGAGAAATGGAAATGTTCAATTTTAACCACG
CTGAATTGGCTTAAATTGTGCACATGAAAATTCACATGTACAATCTCGAA
AGAAATTTTTAAATGGCGAAAAAGTATGACGGAAAGTAAGCCAATACTTG
GTGAATGTCGCGACAGCTATTTTTGAAGGAAATGATTTTTTGGGTATGTT
GACCATTTTCAAAGTAAGCTCTATAGTGACACTGTCTTTCATTATTAATT
TGCATA

protein sequence of rna1479

>rna1479-protein ID=rna1479-protein|Name=rna1479|organism=Nannochloropsis gaditana|type=polypeptide|length=366bp
MHARLGHDNKAKKVLVIVTGGTLIMKPNAGDGALDVCPGFLSELLASSEW
RHRNLPEIDVLEWTILTDSACMGPEHWIKIATDIEKAYFEYDGFVVVHGT
DTLAYSASALAFMLEDLGKPVIFTGSQIPLAEVYTDARNNLVTSLLFACR
QDFHEVCIFFGNRLLRGCRATKIDSFDLQAFASPNFPPLATVGVNLEISS
HFSLPPRKTMRVHKKMDSNLIVIRLVPGFEDDSLIAMVIHSTQLHGIILL
LYGTGNGDTSSRSGLLEAVKLATSKGILVVVLTQCFQGGVLLEKYSVGVA
LRAAGVVSGHDMTVEACTTKLSYLFSRTGGDLAKIKSLLSVDLRGELSCD
SRYRNVIQDIQATSRL

mRNA from alignment at CM002457.1:737380..738906+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1479 ID=rna1479|Name=rna1479|organism=Nannochloropsis gaditana|type=mRNA|length=1527bp|location=Sequence derived from alignment at CM002457.1:737380..738906+ (Nannochloropsis gaditana)
AACCTGTCGTTCATTCCCGAAGCTGTCGGCACACTTTACAGGCACTCTAT
AGTCCAAGCCGTCCTTGACTGGCGTATGCATGCTCGATTAGGCCATGACA
ACAAGGCCAAAAAAGTGTTGGTCATTGTGACTGGAGGAACACTGATCATG
AAGCCAAACGCGGGAGATGGCGCATTAGATGTATGTCCTGGCTTCCTTTC
GGAGTTATTAGCATCGTCAGAATGGCGTCACCGCAATCTTCCGGAGATAG
ACGTGTTGGAATGGACAATTCTGACCGATAGTGCATGTATGGGGCCTGAG
CACTGGATCAAGATTGCCACTGACATAGAGAAGGCATATTTTGAGTATGA
CGGCTTTGTAGTCGTACATGGTACAGATACATTGGCTTACTCTGCAAGCG
CGTTAGCCTTCATGTTGGAGGATCTTGGAAAGCCTGTCATATTCACTGGG
AGCCAAATACCGCTTGCTGAGGTATACACTGATGCAAGAAATAATCTTGT
GACCTCCCTGCTCTTTGCCTGCCGTCAAGATTTCCATGAAGTGTGCATTT
TCTTTGGAAATCGGCTACTGAGGGGTTGCCGAGCCACCAAGATTGACTCC
TTCGATCTTCAAGCATTTGCGTCACCTAATTTTCCTCCGTTGGCCACAGT
GGGAGTCAATTTAGAAATTTCTTcacatttctccctcccgcctcgaAAGA
CAATGCGCGTTCACAAAAAAATGGACAGCAATCTGATAGTAATCCGCTTG
GTGCCCGGGTTCGAGGACGATTCACTGATCGCCATGGTCATTCACAGCAC
CCAACTTCACGGGATCATCTTACTCTTGTACGGTATGTTGTCTCACAGGC
CTGGCTTTTTTTGCGGCTGTGTACCTTGAAGCAATCGATCATAGACGCAA
AGAAGTTGCTCTCTACCCCGGCGCCATGCTGACACAGTCTCACCGACTCT
TGACTTAGGCCGGCAGAAAATAGAATCTGCACCTAGCACACCAACTTTTC
GTATCTATTTCATTCTAATCGCTGACTGTCTCGTTTTGGCTCCTCAGGTA
CTGGCAATGGGGATACGTCTTCGCGCTCGGGCTTGCTCGAGGCTGTCAAA
TTGGCGACGAGTAAGGGCATTCTTGTAGTGGTACTTACGCAGTGCTTTCA
AGGAGGTGTTTTGCTTGAGAAATACAGCGTTGGAGTTGCGCTTCGTGCTG
CAGGGGTAGTGAGTGGTCACGACATGACGGTGGAGGCGTGCACCACGAAG
CTCTCTTATCTTTTTTCAAGGACGGGCGGAGATCTCGCAAAAATAAAGAG
TCTCTTGAGCGTCGACTTACGAGGGGAGCTTTCATGCGACTCTCGGTACC
GCAACGTTATCCAGGACATCCAAGCGACATCCAGGCTGTGACTTATAAAT
AGATATGCGTTGGGTGAGGAGAGCCACCTTCGACTCTCTTGGAGAAAGCT
TGACACAAAATGAAGGAGTGTAAAATATGGTATAAAAATATGTTCTAAAA
AAAATCATGAATGAATATGTGACATAA

Coding sequence (CDS) from alignment at CM002457.1:737380..738906+

>rna1479 ID=rna1479|Name=rna1479|organism=Nannochloropsis gaditana|type=CDS|length=2202bp|location=Sequence derived from alignment at CM002457.1:737380..738906+ (Nannochloropsis gaditana)
ATGCATGCTCGATTAGGCCATGACAACAAGGCCAAAAAAGTGTTGGTCAT
TGTGACTGGAGGAACACTGATCATGAAGCCAAACGCGGGAGATGGCGCAT
TAGATGTATGTCCTGGCTTCCTTTCGGAGTTATTAGCATCGTCAGAATGG
CGTCACCGCAATCTTCCGGAGATAGACGTGTTGGAATGGACAATTCTGAC
CGATAGTGCATGTATGGGGCCTGAGCACTGGATCAAGATTGCCACTGACA
TAGAGAAGGCATATTTTGAGTATGACGGCTTTGTAGTCGTACATGGTACA
GATACATTGGCTTACTCTGCAAGCGCGTTAGCCTTCATGTTGGAGGATCT
TGGAAAGCCTGTCATATTCACTGGGAGCCAAATACCGCTTGCTGAGGTAT
ACACTGATGCAAGAAATAATCTTGTGACCTCCCTGCTCTTTGCCTGCCGT
CAAGATTTCCATGAAGTGTGCATTTTCTTTGGAAATCGGCTACTGAGGGG
TTGCCGAGCCACCAAGATTGACTCCTTCGATCTTCAAGCATTTGCGTCAC
CTAATTTTCCTCCGTTGGCCACAGTGGGAGTCAATTTAGAAATTTCTTca
catttctccctcccgcctcgaAAGACAATGCGCGTTCACAAAAAAATGGA
CAGCAATCTGATAGTAATCCGCTTGGTGCCCGGGTTCGAGGACGATTCAC
TGATCGCCATGGTCATTCACAGCACCCAACTTCACGGGATCATCTTACTC
TTGTACGGTACTGGCAATGGGGATACGTCTTCGCGCTCGGGCTTGCTCGA
GGCTGTCAAATTGGCGACGAGTAAGGGCATTCTTGTAGTGGTACTTACGC
AGTGCTTTCAAGGAGGTGTTTTGCTTGAGAAATACAGCGTTGGAGTTGCG
CTTCGTGCTGCAGGGGTAGTGAGTGGTCACGACATGACGGTGGAGGCGTG
CACCACGAAGCTCTCTTATCTTTTTTCAAGGACGGGCGGAGATCTCGCAA
AAATAAAGAGTCTCTTGAGCGTCGACTTACGAGGGGAGCTTTCATGCGAC
TCTCGGTACCGCAACGTTATCCAGGACATCCAAGCGACATCCAGGCTGTG
AATGCATGCTCGATTAGGCCATGACAACAAGGCCAAAAAAGTGTTGGTCA
TTGTGACTGGAGGAACACTGATCATGAAGCCAAACGCGGGAGATGGCGCA
TTAGATGTATGTCCTGGCTTCCTTTCGGAGTTATTAGCATCGTCAGAATG
GCGTCACCGCAATCTTCCGGAGATAGACGTGTTGGAATGGACAATTCTGA
CCGATAGTGCATGTATGGGGCCTGAGCACTGGATCAAGATTGCCACTGAC
ATAGAGAAGGCATATTTTGAGTATGACGGCTTTGTAGTCGTACATGGTAC
AGATACATTGGCTTACTCTGCAAGCGCGTTAGCCTTCATGTTGGAGGATC
TTGGAAAGCCTGTCATATTCACTGGGAGCCAAATACCGCTTGCTGAGGTA
TACACTGATGCAAGAAATAATCTTGTGACCTCCCTGCTCTTTGCCTGCCG
TCAAGATTTCCATGAAGTGTGCATTTTCTTTGGAAATCGGCTACTGAGGG
GTTGCCGAGCCACCAAGATTGACTCCTTCGATCTTCAAGCATTTGCGTCA
CCTAATTTTCCTCCGTTGGCCACAGTGGGAGTCAATTTAGAAATTTCTTc
acatttctccctcccgcctcgaAAGACAATGCGCGTTCACAAAAAAATGG
ACAGCAATCTGATAGTAATCCGCTTGGTGCCCGGGTTCGAGGACGATTCA
CTGATCGCCATGGTCATTCACAGCACCCAACTTCACGGGATCATCTTACT
CTTGTACGGTACTGGCAATGGGGATACGTCTTCGCGCTCGGGCTTGCTCG
AGGCTGTCAAATTGGCGACGAGTAAGGGCATTCTTGTAGTGGTACTTACG
CAGTGCTTTCAAGGAGGTGTTTTGCTTGAGAAATACAGCGTTGGAGTTGC
GCTTCGTGCTGCAGGGGTAGTGAGTGGTCACGACATGACGGTGGAGGCGT
GCACCACGAAGCTCTCTTATCTTTTTTCAAGGACGGGCGGAGATCTCGCA
AAAATAAAGAGTCTCTTGAGCGTCGACTTACGAGGGGAGCTTTCATGCGA
CTCTCGGTACCGCAACGTTATCCAGGACATCCAAGCGACATCCAGGCTGT
GA

Synonyms

Publications