rna1477, rna1477 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1477
Unique Name	rna1477
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2856
Alignment location	CM002457.1:732411..735282 +

Link to JBrowse

Properties


Property Name	Value
Product	PsbB mRNA maturation factor
Orig transcript id	gnl\|cribi\|Naga_100007g105.6494.mrna
Orig protein id	gnl\|cribi\|Naga_100007g105.6494
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:732411..735282 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g105	gene1425	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1477	rna1477-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29167.1	cds1474	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:732411..735282+
coding sequence from alignment at CM002457.1:732411..735282+

mRNA sequence

>rna1477 ID=rna1477|Name=rna1477|organism=Nannochloropsis gaditana|type=mRNA|length=2856bp
CCTCGTGGCTCGCTCCGCTCCCTCGTGGCTGCAGGAGCGAGGTTGCACAT
TGCCCGACAGTGACGACTGTCTGTGCATTTCCTATGAAGTCATGTAGTCC
AAACCTGCACATAACTGATACCACAATTGGAAGGCACACATTACCTTTTC
CATACTGAGAAGAAGTTCCTAAATGTGTCGCTAGAAAGTGTGTTGATGCG
GGTCCAACACGCCACCACAACTGATCTTTTCAGCCACTCCTTGTGAATGC
TCACCAAGCTTGCCTTGCGTGTTTCGGCTCGTCCTTTCAAACGAAGAACT
TGACCATTTGACTCACTCATATCGACCATGTCTCTTTATATATCTACAGG
GAGTGGTGTCAGATTTAATTGACCATGCGCTCAGCTAGCATATTAGTATC
CTTACCACTGGTGATCCCACAGGTGTTGGCTGGCTTTTTGGGAGGTGAGC
ATCTATTTACGACCGTCATTAAGAGGGTTCAGTTATGGTATAACATTCAT
GGCCCGAGAGCGCGGCGTGGAAAAAAGGGATGACTTTGTCACTTTCCCAG
GATATGAAGCCCCTTCGGCCAATTTACAAATGTGACATGGATACACAAGA
CTTCGTGCGTTTAAGTATCTTACTTTTTCCCGCTTCTCTCTCCATATATT
TCAGCCGGCCGCGACCAACAAGCGTTCATAGTGGGTTGCATCAAGCAGCG
GCCTCATTTTCTGTCAGTTTCCTCCTGTAACCACCCGAAAAAGATCCATT
GCATCACGGTTGAGGGCCGCAATACCCGGCGCAGGTCGCAGATCTGGCCA
CTTTGGACGGGCGAGGGGGCTGGAGTAAGCGAGCTAGCCACTCCTGTGGC
GGAGCTGACGATAGAAAGCCAAGCTCCCGAGCCAGAGAGTGATGGCAGTG
CAACGTTAAAAGATGAGAAGAAGCCTCGTGAGAAGCGTGTGCCCCTCGCT
GACTTGACCGCAGGCGCGGAGTTTGCGGGCAAGGTCAAGGGTATCAAAGA
CTTTGGAATATTTGTGGACATCGGCGCAGAGAGCGATGGGCTGGTGCATA
TTTCACAAATGTCTTCGACCTTCGTTTCAAGCCCGTCAGATCTCGCTGCA
GTGGGTGACTCCGTGACTGTACGCGTGCTAAGTGTGGATGCGGACAAGCG
CCAAATCGCCCTCACTATGAAAACTGAGGCCGAGGCAAATGCTCCGCGTC
CTACCAAACGCACATCGAAGAGGCGTCCAGCGGATCGGGACGATGCAAAT
CCATCAGACGAGGAGGACGATCAAGGTGATGGCGATGCCTTGCGTGACGC
ACCAGTGGGAGACAAGGACGTCAGCGCTTTCGAACATTATGACCCCAAGA
AATTTCTTAGCGGGACTGTTGCTTCGGTACAAGCTTATGGGGCCTTCATC
CGGCTGGATGATGCCGACCTCGACGGTCTGCTGCCCACAGGAGACATGGA
CGGCAAGCTGGAGTCTGGCCAGCGTGTGCAGGTGCGGATCACGGACGTTG
ACACAGAGCGCAATCGCATCACGCTTTCAAATTTGCCGCTGCTCCGTGGC
AAGCGAACGCGTTTTGCCTTGAATAAAGAGGAAAATGATGAGCTGGCGGT
CATTGCCGCCCGGTCGGGGCTTTACGCGTCGGAGCTGCCTGACGTGTTCG
AGGGCCCTGATGACGACGCAGACTGGGAGGCGGCTTTTGCGTTCAAAGGT
TTTGAAGATGGGGGAGATGGAATGGCAGAGGAAGAGGTCGGCGGTCCCGA
GGCTCTTTTTGGTGAAGAACCGGAGGAGGATGATGAGGAGTTCAGCATGA
GCTCCATCAACGCCTTCCGCAGCCCAGCTTACAAAAAAGAAAAGGGCTTG
ATGGCGGAAGACGAGGAGGAGGCGGACGAGGGTTTTAAATACGGTGGCGA
GGCGTATTTTCCCGAGGACGACGAAGCTGATGACGCGATTTCTGGCACAT
TCACAAAGCAATACGATACGCAAATCCCACAGCTTAGCGAGGACGAGCTG
AAGGCCTTGATTCGAAAGGCGCAGGGTACGCGCCGGAACGTAACCGAAGA
ATGGGCTGAGGAGGAGGCGGAGGAGCGAGAGTACCTGACCGTGAGCATGG
TTCCGTCCAAGAGGAAGAACACGGCATTGATGATGAAACAAGTGGTGCCA
ACTCAGTCTGATGCCATACTTGCCAAGCCACGCATGCCCATCTATTTTTC
TAAGAAGCTATCAGCTGTGCAGCAAGTGGAGCTCATGGAAGAATTGGAAA
GACTGGTCAACGACGACCCCTTAGCTCTTGTGAAATAAGCTGCTAAGCTG
CTCAGGAATGGTCTTCGAACATCTCGTCCGCCGATGGAGTTAGACAAAGT
GGATGGCGTGCTTTGTCGGGAGTGGAGAGGATATTCGCATGCGAAAGCGG
GGGTGCGACGGTCGCAGTACTGAGTAAGGCGCCGTTATGGGATGAGATGT
GCAACTGCATAACGAAAGGGAAAATAAGGGAGGATTCAGGGGGAAAGGAA
TATATGTCCTGTCGGGGGAGGAGAACGCACACATTCTTTATACATACGCA
TCTAGTATCGACGAACATCAATCCACACGAACACATTATACGGGTGCTTG
GATTCTACGAGCATAAAAATGTGAGCGAGCGCAGATGACATACAAAGGGG
GTGCTTGAGGTTCTGCTTGACGAAAGCGCATGCCAGACCTCATAGATTTA
AAGAAGAAAGCATCAGAAGACAGCGTTGCTATTTAAGTACCTAGCTTTTG
AGCCTCATGGCATCTAACATTTGACAGCATGCACTGTGGTCCGCTTATTC
TTCTCTTAAGACTTCTACATATTGTCTCTCACCTCCGGCTTTGAACAAGC
TCTGCA

protein sequence of rna1477

>rna1477-protein ID=rna1477-protein|Name=rna1477|organism=Nannochloropsis gaditana|type=polypeptide|length=893bp
MMLRHRSSMAPVAASLWPILVFCSLIQLQSSMRVVEAFLARNFFSVSNKA
VVGITMPRLTSTPLHQNRLLCRMVLGETTASATHMNVVPQVADNISPIVQ
DPQRQNGQPQQHHHKHQHQPKPPEQSHRQRRKAKEERRKVAGLTAVGTKK
GHEQPYGTSRMHSSTKYHQRKGLVVRVYQEAQREARSGRLEKAEELFRRC
LTMDRKDGRSWLQLAQLASRRGRQEEARSYFAQGVSECPESVHLLQSWAM
LEHKAGDLEKACELFEKGMAQDPGNPYIAHAWGQLERKRADHDKARTLYM
DSLRLYGPWAQVYMALAELEVETGHVEMARQIFEEALRLCAQNTHKLLVA
WAKLEEENFGDWEKATELLLRAMEDGGPDFTDATVALAHLEMKKGNKERA
VDILQQSKHQGGAGGSLFNTWASVEAKAGNLETAIKLLSEACVLFPDDFS
LLQTLGTLEVKQGHHEKARECFSQSAAIRPHVVTYNAWAIMEERLAHDMR
GPMRQVQIMRARKLFMLGMAADPSHGPLYNAYGRMEEKIGNLTGAQEVFR
MGVEAHCPDMPSVLNGWAMLSLKQRNYAQARSLLQRGLSENKLGKNVGFL
YHSLGMLEMKLGKIEDAWRVFKEATDKYPRNSQLLVGAGLAAEKRGEVDS
ARGFFKGGVECDRLHHQAWQAWAVMEHRQGNVNTARDLFRLGLKANPDYG
ALWQAYGVLEFHEENWDVARSLFAEGIRRDPGHVMLFQAWAVLEVKLADY
EKGKEMIKEGLRVDSRHGACWSIYGYIEEKCGNVDEARRVFEMGLKQAPD
HAPLFRVYGDFERRQGNTDKARSLYQRAISLDPHHPQAYVVLGLMELYSG
NAEGARMVREASQAVFGHDFEFTKQREAVSSFDNAELGELHSI

mRNA from alignment at CM002457.1:732411..735282+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1477 ID=rna1477|Name=rna1477|organism=Nannochloropsis gaditana|type=mRNA|length=2872bp|location=Sequence derived from alignment at CM002457.1:732411..735282+ (Nannochloropsis gaditana)
GTCGCAGGTGACACCCTTATTCTACATACGAAACGTTCGGAAAGCCTTAA
TTCAGAGAAGCCCCCAGATAGAGGAGCACAGTCATGATGCTGCGGCATCG
CAGCTCCATGGCCCCAGTCGCAGCGTCTTTATGGCCAATATTAGTCTTTT
GCAGTCTGATTCAACTGCAATCAAGCATGAGAGTTGTAGAGGCTTTTCTG
GCGCGGAATTTTTTTTCAGTATCAAATAAAGCAGTCGTTGGTATCACGAT
GCCTCGGTTGACAAGCACTCCATTGCATCAAAATAGGCTCTTATGCCGCA
TGGTGCTGGGGGAGACAACAGCTTCTGCAACTCACATGAATGTGGTACCT
CAAGTAGCAGACAATATATCACCAATTGTACAAGATCCACAACGGCAGAA
TGGACAACCCCAGCAGCATCACCACAAACACCAACACCAGCCGAAGCCGC
CAGAGCAGTCGCACAGGCAGCGGCGGAAAGCAAAAGAAGAGCGAAGGAAA
GTAGCCGGCCTCACGGCCGTGGGGACAAAGAAGGGCCATGAGCAGCCATA
TGGAACGTCGCGGATGCATTCGAGCACGAAGTATCACCAGCGTAAAGGCC
TTGTAGTCCGAGTCTACCAGGAAGCTCAGCGCGAGGCACGTAGTGGCCGA
TtggagaaagcggaggagctTTTTAGACGTTGCTTGACGATGGACAGGAA
AGATGGACGCAGTTGGCTTCAATTGGCGCAGCTTGCTAGCCGTCGGGGAC
GACAAGAAGAGGCCAGGTCGTACTTTGCGCAGGGAGTTTCCGAATGCCCG
GAGAGTGTTCACCTGCTACAGTCATGGGCTATGTTAGAGCACAAAGCTGG
CGATCTCGAGAAAGCATGTGAGCTTTTCGAGAAAGGCATGGCACAAGATC
CTGGCAATCCATATATAGCACATGCTTGGGGCCAACTGGAGCGGAAACGG
GCCGATCACGACAAAGCGCGGACATTGTATATGGACTCACTACGGCTGTA
CGGCCCATGGGCCCAGGTTTACATGGCTCTGGCAGAACTGGAGGTCGAAA
CCGGTCATGTTGAGATGGCTCGTCAAATTTTTGAAGAAGCTTTGCGTCTG
TGCGCACAGAACACGCACAAGTTATTGGTGGCCTGGGCtaagctggagga
ggaaaacttTGGTGACTGGGAAAAAGCAACAGAATTACTGTTGCGTGCTA
TGGAAGACGGTGGCCCTGACTTTACTGATGCCACTGTTGCTTTGGCACAT
TTAGAGATGAAAAAAGGTAACAAAGAGCGAGCAGTTGATATCCTACAGCA
ATCCAAGCatcaagggggggcaggaggttctCTGTTCAACACTTGGGCAT
CTGTTGAAGCGAAAGCAGGAAACCTGGAAACCGCTATCAAATTGTTGTCC
GAGGCCTGTGTGCTTTTTCCCGACGATTTCTCATTGCTGCAGACTCTTGG
CACATTAGAAGTAAAGCAAGGCCATCATGAGAAAGCTCGCGAATGCTTCT
CGCAAAGCGCTGCCATTCGCCCACATGTGGTGACATATAATGCGTGGGCG
ATTATGGAGGAGCGCTTAGCACACGATATGCGCGGACCTATGCGGCAAGT
TCAAATAATGCGCGCGCGTAAGCTATTTATGCTAGGTATGGCTGCAGATC
CGTCGCATGGCCCCCTCTACAACGCTTACGGTcgaatggaggagaaaatt
gGAAATCTGACAGGGGCTCAAGAAGTCTTCCGGATGGGGGTCGAGGCACA
TTGTCCTGATATGCCCTCGGTTTTAAATGGGTGGGCCATGCTCTCTCTAA
AGCAGCGGAATTACGCTCAGGCCAGGTCCTTGCTGCAAAGAGGACTTTCC
GAAAACAAGCTGGGGAAGAATGTGGGGTTCTTATACCATTCACTAGGCAT
GCTGGAGATGAAGCTTGGTAAGATAGAGGATGCATGGAGGGTATTCAAAG
AAGCCACGGACAAATACCCACGCAACTCCCAGCTCTTGGTGGGAGCAGGT
CTAGCAGCAGAGAAGAGAGGCGAGGTGGACTCAGCCCGGGGTTTCTTCAA
GGGAGGCGTCGAATGTGATCGTCTCCATCACCAAGCCTGGCAGGCTTGGG
CGGTTATGGAGCATAGACAAGGGAATGTCAACACTGCCCGCGACCTTTTC
CGGCTGGGTTTGAAAGCGAATCCGGATTATGGAGCGCTATGGCAGGCTTA
CGGTGTGCTCGAATTTCATGAAGAAAACTGGGACGTGGCGCGGAGTTTGT
TCGCGGAGGGCATCCGCCGTGATCCTGGTCATGTCATGCTTTTCCAGGCC
TGGGCCGTTCTGGAGGTGAAGCTTGCTGATTacgagaagggaaaagaaat
gatCAAGGAGGGCCTGCGAGTAGATTCGAGGCATGGTGCTTGTTGGAGCA
TTTACGGCTATATAGAGGAGAAATGTGGAAATGTAGACGAAGCCCGACGT
GTGTTTGAGATGGGTTTGAAACAGGCCCCTGACCATGCTCCACTTTTTCG
GGTATACGGAGACTTTGAGCGTCGGCAAGGCAACACCGACAAAGCTAGGT
CCCTTTATCAGCGAGCCATTTCGCTCGATCCCCATCATCCTCAAGCCTAT
GTGGTCTTAGGCCTTATGGAGCTCTATTCCGGTAATGCTGAAGGCGCTAG
AATGGTTCGCGAGGCGAGTCAGGCAGTTTTTGGCCATGACTTCGAATTTA
CAAAGCAACGGGAAGCTGTCTCTTCATTTGATAACGCGGAGTTAGGGGAG
TTGCATTCAATATGAGCGAAGTACATATATGCAAATTAATAATGAAAGAC
AGTGTCACTATAGAGCTTACTTTGAAAATGGTCAACATACCCAAAAAATC
ATTTCCTTCAAAAATAGCTGTC

Coding sequence (CDS) from alignment at CM002457.1:732411..735282+

>rna1477 ID=rna1477|Name=rna1477|organism=Nannochloropsis gaditana|type=CDS|length=2682bp|location=Sequence derived from alignment at CM002457.1:732411..735282+ (Nannochloropsis gaditana)
ATGATGCTGCGGCATCGCAGCTCCATGGCCCCAGTCGCAGCGTCTTTATG
GCCAATATTAGTCTTTTGCAGTCTGATTCAACTGCAATCAAGCATGAGAG
TTGTAGAGGCTTTTCTGGCGCGGAATTTTTTTTCAGTATCAAATAAAGCA
GTCGTTGGTATCACGATGCCTCGGTTGACAAGCACTCCATTGCATCAAAA
TAGGCTCTTATGCCGCATGGTGCTGGGGGAGACAACAGCTTCTGCAACTC
ACATGAATGTGGTACCTCAAGTAGCAGACAATATATCACCAATTGTACAA
GATCCACAACGGCAGAATGGACAACCCCAGCAGCATCACCACAAACACCA
ACACCAGCCGAAGCCGCCAGAGCAGTCGCACAGGCAGCGGCGGAAAGCAA
AAGAAGAGCGAAGGAAAGTAGCCGGCCTCACGGCCGTGGGGACAAAGAAG
GGCCATGAGCAGCCATATGGAACGTCGCGGATGCATTCGAGCACGAAGTA
TCACCAGCGTAAAGGCCTTGTAGTCCGAGTCTACCAGGAAGCTCAGCGCG
AGGCACGTAGTGGCCGATtggagaaagcggaggagctTTTTAGACGTTGC
TTGACGATGGACAGGAAAGATGGACGCAGTTGGCTTCAATTGGCGCAGCT
TGCTAGCCGTCGGGGACGACAAGAAGAGGCCAGGTCGTACTTTGCGCAGG
GAGTTTCCGAATGCCCGGAGAGTGTTCACCTGCTACAGTCATGGGCTATG
TTAGAGCACAAAGCTGGCGATCTCGAGAAAGCATGTGAGCTTTTCGAGAA
AGGCATGGCACAAGATCCTGGCAATCCATATATAGCACATGCTTGGGGCC
AACTGGAGCGGAAACGGGCCGATCACGACAAAGCGCGGACATTGTATATG
GACTCACTACGGCTGTACGGCCCATGGGCCCAGGTTTACATGGCTCTGGC
AGAACTGGAGGTCGAAACCGGTCATGTTGAGATGGCTCGTCAAATTTTTG
AAGAAGCTTTGCGTCTGTGCGCACAGAACACGCACAAGTTATTGGTGGCC
TGGGCtaagctggaggaggaaaacttTGGTGACTGGGAAAAAGCAACAGA
ATTACTGTTGCGTGCTATGGAAGACGGTGGCCCTGACTTTACTGATGCCA
CTGTTGCTTTGGCACATTTAGAGATGAAAAAAGGTAACAAAGAGCGAGCA
GTTGATATCCTACAGCAATCCAAGCatcaagggggggcaggaggttctCT
GTTCAACACTTGGGCATCTGTTGAAGCGAAAGCAGGAAACCTGGAAACCG
CTATCAAATTGTTGTCCGAGGCCTGTGTGCTTTTTCCCGACGATTTCTCA
TTGCTGCAGACTCTTGGCACATTAGAAGTAAAGCAAGGCCATCATGAGAA
AGCTCGCGAATGCTTCTCGCAAAGCGCTGCCATTCGCCCACATGTGGTGA
CATATAATGCGTGGGCGATTATGGAGGAGCGCTTAGCACACGATATGCGC
GGACCTATGCGGCAAGTTCAAATAATGCGCGCGCGTAAGCTATTTATGCT
AGGTATGGCTGCAGATCCGTCGCATGGCCCCCTCTACAACGCTTACGGTc
gaatggaggagaaaattgGAAATCTGACAGGGGCTCAAGAAGTCTTCCGG
ATGGGGGTCGAGGCACATTGTCCTGATATGCCCTCGGTTTTAAATGGGTG
GGCCATGCTCTCTCTAAAGCAGCGGAATTACGCTCAGGCCAGGTCCTTGC
TGCAAAGAGGACTTTCCGAAAACAAGCTGGGGAAGAATGTGGGGTTCTTA
TACCATTCACTAGGCATGCTGGAGATGAAGCTTGGTAAGATAGAGGATGC
ATGGAGGGTATTCAAAGAAGCCACGGACAAATACCCACGCAACTCCCAGC
TCTTGGTGGGAGCAGGTCTAGCAGCAGAGAAGAGAGGCGAGGTGGACTCA
GCCCGGGGTTTCTTCAAGGGAGGCGTCGAATGTGATCGTCTCCATCACCA
AGCCTGGCAGGCTTGGGCGGTTATGGAGCATAGACAAGGGAATGTCAACA
CTGCCCGCGACCTTTTCCGGCTGGGTTTGAAAGCGAATCCGGATTATGGA
GCGCTATGGCAGGCTTACGGTGTGCTCGAATTTCATGAAGAAAACTGGGA
CGTGGCGCGGAGTTTGTTCGCGGAGGGCATCCGCCGTGATCCTGGTCATG
TCATGCTTTTCCAGGCCTGGGCCGTTCTGGAGGTGAAGCTTGCTGATTac
gagaagggaaaagaaatgatCAAGGAGGGCCTGCGAGTAGATTCGAGGCA
TGGTGCTTGTTGGAGCATTTACGGCTATATAGAGGAGAAATGTGGAAATG
TAGACGAAGCCCGACGTGTGTTTGAGATGGGTTTGAAACAGGCCCCTGAC
CATGCTCCACTTTTTCGGGTATACGGAGACTTTGAGCGTCGGCAAGGCAA
CACCGACAAAGCTAGGTCCCTTTATCAGCGAGCCATTTCGCTCGATCCCC
ATCATCCTCAAGCCTATGTGGTCTTAGGCCTTATGGAGCTCTATTCCGGT
AATGCTGAAGGCGCTAGAATGGTTCGCGAGGCGAGTCAGGCAGTTTTTGG
CCATGACTTCGAATTTACAAAGCAACGGGAAGCTGTCTCTTCATTTGATA
ACGCGGAGTTAGGGGAGTTGCATTCAATATGA

Synonyms

Publications