rna1475, rna1475 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1475
Unique Name	rna1475
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1989
Alignment location	CM002457.1:725214..728414 -

Link to JBrowse

Properties


Property Name	Value
Product	inositol 5-phosphatase
Orig transcript id	gnl\|cribi\|Naga_100007g108.6458.mrna
Orig protein id	gnl\|cribi\|Naga_100007g108.6458
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:725214..728414 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g108	gene1423	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29131.1	cds1472	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1475	rna1475-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:725214..728414-
coding sequence from alignment at CM002457.1:725214..728414-

mRNA sequence

>rna1475 ID=rna1475|Name=rna1475|organism=Nannochloropsis gaditana|type=mRNA|length=1989bp
GAAAGTGCACGCTGTACGTAACGAACAATGGTCTCTTTTCTGTGGTCAGG
AATGATTCTAACGTGTTTCTTATTCCATCGTTATCCAGCTGCTTGTGTTT
GGGTTGCTATCATGCATTACAGTTCCTTTTTTATGTTAGCGTTCAGTTTC
AGAGCCAATCGCTGCTTCCTTCTTGACAGATCGCTCAGACTGCGTTCTCG
TTCGTTGTTTCCAGAATTGAAGGCCTTCTTCATGCCGCACTCCTTCCCCC
CCCTTTTCTTTCCCTCATTCTCACTTTTGCGAGCGCGTTGCACCACGACT
CCGTGCTCATCAGCAGCTTAAAGTTTCATGGCATTTCACTTTATCGTTTA
GAGCGTAGGGAAGAAACTCTGTTGAATGTGCCCGTCGCCCTGTAATACCA
TTAGTTTACTTACTACTGAGGTTTTACGCTTACCTGTCCTGATATTTTAA
CATGATCCGCTCAGCGGTCACTAAGACTGCTTAGCTGGTGTTGTGGTATG
AGATCTTTCTGGCAAAATTTCTAAGATAAAACGGATGCCTCTCCGTCAAC
CCATGTAGCTCTCCTCAGACTTGGTCTTGTAATCCTGTTCCCTCTCCTAT
ACAGGTTACGTCGCCAATCCTTCCCTTGCGGTCTCCGTAATATTAATTCA
TTACAACCTTAGAATCGCGATTTTTTGCGATGTTTGCGGGATCGCAGGAG
TCATCACAGGAGGCATTAGTAAAAATACTCGAACACTTGAAGAACACTAA
GCTCGAATACGAGGAACGCATTTTTGCGCTAAATGCGAAGCTCAAAGCCA
TGAAGTCTGTCGTGAAGGAAAGTGATATTCGGCAAGCCCAGATGGAAGAT
GAACTTGATTTTAGGAAAAGCGAGCTCGAAGAATTAAAGCGACAACAATT
ACAAAAGCATCGTCTTGAAAGACTAGACGACTGGAAAGCCTTGGTACAAC
AACTACAAGCGGATCGAAGGCGTCTTGGTGAAGAGGTCGATCACTTGCAG
AAAGAGAAGCAGCTATTGGTGATGGAGCTCAAGGAGCATGAACAAGAGAA
GGGGAAGACGAGCTCGAGCATTTTTCATGATCACCTACACTGTGAGATGG
ACGGTGTCAGGGGGAGTGGAGGAAGACATTCAGAATATGAAGCTAAATTT
TCTTTGCCAAGAGATGAGCTTGCATTTGAAGAAGTCAGATTTTTACAGGA
GCGTGTTGAAGTTCTCGAAAATAAAAATAGACGCGCTCATGTTGAAATCA
AACGGCTTCTGGAACAAGTTCGGCGGAGAGATGGCCTCTTGCAAGCGTGG
GGACGAGTTGCGGGAAGTTTAGGCAATTATTTGAGGCTTTTCAGCGGTAA
CGGGACCACATTTCGGGGTATCAACCATCCAGTCATACAGGTGTGAAGGC
AAGGAACTCGTTCATTAGGTGAAAAACGTTGTCCACATATTTCTACCCAT
ATGTAAAAGATGAAGAAAACCGTGTGTACAATACAGAAAGCAGAATATCA
ACATGTCACGCTCTCACACAATTACTGCTTGGATAGTTACTCTCAGAGTG
AAAGTTAAATTCGCTGCTTCATCTTTCAATGTGCTGGGTTCGGGTAGCCA
ATTCGAATGCCTGGATCGTCTTCTGCCAGGTTTACTTATGTATGCATGGT
ACAAGAGAAATATGCATGTTTCATGGATGACTCTACACGAAAAATGGCTT
TGAGACGGGAGGGAACATAAACTCTGTTTCCGCCTGTGCAGCGTTAAAAA
AAAAATTTTCCATCTCATCGGATCCGATATCTGTAGACTAAGGCAAGAAT
TTTAAGGAGACACATTTGAAATCAAACCGCCAAAAGTTTGCTTTCTCTCG
GTGTACACCCACATTCTATGTACTCAATTTCTTGCAACAACGAAAAAATG
AGATCTGTCAAAGGATTATTCCTCTCCCTTGAAGTCTTTGACACACTGCA
CCCTAATTTCTTCAGTCCGAATGTGTTGTGCTTGGGCTC

protein sequence of rna1475

>rna1475-protein ID=rna1475-protein|Name=rna1475|organism=Nannochloropsis gaditana|type=polypeptide|length=777bp
MTSLQTAAAEMGKDVEFDPAAVSIIRQHWIDRQLKKRELEFTEYRTVTVF
CGTYNVNAKIIADEEIQRLEEWLFPDAGELADIFAVGFQEVVDLNAVNVA
MDGKSQQRAQAWQDKLDAVLNNKRREERYVLVAERHLVGILLLVFVKGVH
SKKVREVYGASVGVGLMGMAGNKGGVSMRLKFYDSYLCFVCAHLAAHREN
VEGRNSDFTNILQKTIFVDKALSSEADTPVTGQGDVTEETRKYFSEVLDV
ESTLQTGISILDHDVVFFMGDLNYRLDESVDTEECFAKLKAHDLDFLQRY
DQLNMERIQGRVFSGFSESPLNFLPTYKYQPGTSSYERRPEKKLRCPAWC
DRILWRAKEPGQVRCLSYGRAELGLSDHKPVAAQLLTKVRMVVKAQRQEV
AAEIHRLLDKVENDQHPKVTLEVFDNSTLGSPRPLNTIDFGPVRYGVECR
QALTITNVSNVAAHFRFVPKLEEETICKSWLSIQPRFGMLLPNEVGQINF
KILIDLKTAKMLNTGRDLLDDILILRLENGQDFFLSVGGTYARSAFGMDL
EDLASCHGPVRFLPLTAAKWSQFQSSTSTADKPHLPPTSVGGPTLSVPKE
LWRLVDALYRRGLTEKDLFIQPGVLTEVEAVREALDTGEELEENVSVHSL
TEVLLSFLTSLASPVIPRNLLPSVEIDAQILRPWTRRFLELLPPLNYNIF
VYLISFFREVLKYHESNRLNTEKLATICSKTFLPCNELHWGDSVEVASGP
AVGKGEEHQRLQSMQVIFHYFLTTSVF

mRNA from alignment at CM002457.1:725214..728414-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1475 ID=rna1475|Name=rna1475|organism=Nannochloropsis gaditana|type=mRNA|length=3201bp|location=Sequence derived from alignment at CM002457.1:725214..728414- (Nannochloropsis gaditana)
CCTTACTTACTTCCCGGCACGCTCCTGAATCCACATTTCGCCCGTGAGTA
TCATTCGAGCGGGTTGAGCCAATGTCTATACCGTTATTTACTCGCGTAAG
TTGTGCATGAAAGCTAGCATCAAGGCCCATTTGTCTCCTGTAAGCGTTTT
CTTTCAGAATTCTTAGGGAAGACGAGAACTGCTCATATAGTACACCCACC
CACTGGCAGCATTAAGCCTACTTCAGCATTGATTGCGATTGGTGGAAACT
GATTTTTTGATCAGCCCACCTCGTTATTGATGATCATGGTCAATGCATAT
TTTTTTCTCGCCTTGCCACTCCTTCGCAAGACCTTCCTTGCTATTAATTG
CATGGCGGAAAGGCATCCATTCTCATAGTAATTTGCCCAATATCTTCTCT
CTAGGGCTGGTTACATCAATATGACATCTCTACAAACTGCCGCAGCAGAG
ATGGGAAAAGATGTTGAATTCGACCCTGCAGCAGTGTCAATTATACGTCA
GCACTGGATTGACAGACAGCTCAAGAAGCGAGAGCTGGAGTTTACCGAAT
ATCGAACTGTAACTGTCTTTTGTGGAACCTACAATGTAAATGCAAAGATC
ATCGCCGACGAGGAAATTCAGCGGTTAGAAGAATGGCTTTTTCCAGATGC
AGGAGAGTTGGCAGACATATTTGCAGTTGGTTTTCAAGAGGTCGTGGATT
TGAACGCGGTGAATGTAGCCATGGATGGCAAGTCTCAGCAAAGAGCGCAG
GCCTGGCAAGATAAACTTGATGCTGTACTTAACAATAAGAGGCGCGAAGA
GCGTTATGTGCTGGTGGCAGAAAGGCATTTGGTGGGCATTCTCCTTCTTG
TCTTCGTCAAGGGGGTGCATTCGAAAAAAGTTCGTGAAGTTTACGGGGCC
TCTGTGGGCGTTGGTTTGATGGGAATGGCGGGCAACAAAGGTGGCGTTTC
CATGCGTCTCAAGTTCTATGACTCATATTTATGTTTTGTGTGTGCGCACC
TGGCAGCGCACAGAGAAAACGTTGAAGGCAGAAATAGTGATTTTACTAAC
ATTCTGCAAAAGACGATTTTTGTCGACAAGGCGCTGAGTAGCGAGGCAGA
TACACCCGTAACGGGTCAAGGTGATGTCACCGAGGAGACTCGGAAGTACT
TCTCGGAAGTGCTTGACGTAGAGTCTACTTTACAGACTGGCATTTCGATC
TTAGATCATGACGTTGTGTTCTTTATGGGTGATTTAAATTACCGGCTAGA
CGAATCTGTGGACACGGAAGAGTGTTTCGCCAAACTAAAGGCACATGATC
TTGATTTTCTGCAGCGCTACGATCAGCTCAATATGGAACGAATCCAGGGC
CGTGTCTTCTCCGGATTCAGTGAGTCGCCGTTAAATTTCCTCCCTACCTA
CAAGTATCAGCCGGGCACTTCCTCATATGAGCGGCGACCGGAGAAAAAAT
TGCGTTGCCCAGCCTGGTGCGATCGTATCCTCTGGCGGGCCAAAGAGCCT
GGGCAAGTGCGATGCCTATCATACGGGCGGGCGGAGCTTGGCCTCTCAGA
CCACAAGCCGGTGGCAGCGCAGCTGCTGACCAAAGTTCGCATGGTTGTGA
AAGCACAGCGACAAGAAGTGGCCGCCGAGATTCACCGCCTTTTGGACAAA
GTGGAAAATGACCAACACCCCAAAGTGACCCTTGAGGTATTTGACAACAG
CACCTTAGGTTCTCCGCGACCACTGAACACAATTGATTTTGGTCCTGTAA
GATACGGCGTGGAATGCAGGCAAGCTCTTACAATTACCAACGTGTCAAAT
GTAGCAGCTCACTTCCGTTTTGTTCCCAAACTTGAGGAGGAGACTATCTG
CAAAAGTTGGCTCAGCATCCAGCCTCGCTTCGGAATGTTGCTACCCAATG
AGGTTGGCCAAATAAATTTTAAAATTTTAATAGACCTTAAAACGGCTAAG
ATGCTCAACACAGGACGTGACTTGCTGGATGACATTTTAATTCTACGCCT
CGAGAACGGTCAAGACTTTTTCTTAAGCGTTGGTGGCACGTACGCTCGAT
CAGCTTTTGGGATGGATCTAGAGGATCTCGCCAGTTGCCACGGGCCTGTT
CGCTTTCTTCCCCTCACTGCAGCAAAGTGGTCCCAGTTCCAGTCGAGCAC
TTCGACCGCAGACAAGCCCCATCTGCCACCTACATCGGTTGGAGGTCCAA
CACTCTCTGTACCAAAAGAGCTTTGGCGGTTAGTCGATGCTCTTTACCGT
CGAGGTCTCACGGAAAAAGACCTCTTTATCCAACCGGGTGTTTTGACTGA
AGTTGAAGCTGTGCGGGAGGCTCTCGACACGGGCGAAGAATTGGAAGAGA
ACGTTTCCGTGCATTCTCTCACAGAAGTCCTCCTAAGCTTTCTCACGTCG
CTTGCCAGTCCTGTGATTCCGAGAAATCTCCTTCCTTCTGTCGAAATTGA
TGCTCAAATATTACGGCCTTGGACAAGACGCTTCTTGGAACTGCTACCAC
CCTTGAACTACAATATTTTCGTCTACCTAATTTCTTTTTTCCGCGAAGTA
TTGAAGTATCATGAGTCTAACCGGCTCAATACTGAGAAATTGGCTACAAT
ATGCAGCAAGACCTTTTTGCCATGCAATGAGCTCCATTGGGGCGACTCAG
TCGAAGTGGCTAGCGGTCCAGCAGTTGGAAAAGGTGAGGAGCACCAGCGC
CTTCAAAGTATGCAAGTCATCTTTCATTACTTCCTGACCACAAGCGTCTT
TTGAGTGACAAATGAGGACCAGCCAGTCTGAAGATATGTTTGTCAATAGA
TACTGAGTACATTCATTGTACGTGCGACGGGCCTCGATACGCTGGCTCAG
GCAAAGAGCTCGAGTCAAATTGGAAAAGAAGGCATGTTGTAAATATTGTA
TTATCGAACTATTTATGCGTAAATACAAAAGCGCTTCGGGGTGAAAATTG
CTTTTTGACTGAGTCCATGACAGATCCAAGGCCTGGACTAAATCTCTCTG
CGAGTATTGTCAAGTCACTTCTAATTTGATAATTATTGCTGTTTCATTTC
TCACACCCTCTAAGGCTCATGTAGTCTGGATAAAGTATCTTGAGGGCATG
GGCCACTGCCACAGCAGCACGGGCCACGATTAATGGGGAATTTAACGGCA
TAAAAAGCGATGCAGTAGTCACGGCTACAACCAAAGAATTTATCCTTTAC
A

Coding sequence (CDS) from alignment at CM002457.1:725214..728414-

>rna1475 ID=rna1475|Name=rna1475|organism=Nannochloropsis gaditana|type=CDS|length=2334bp|location=Sequence derived from alignment at CM002457.1:725214..728414- (Nannochloropsis gaditana)
ATGACATCTCTACAAACTGCCGCAGCAGAGATGGGAAAAGATGTTGAATT
CGACCCTGCAGCAGTGTCAATTATACGTCAGCACTGGATTGACAGACAGC
TCAAGAAGCGAGAGCTGGAGTTTACCGAATATCGAACTGTAACTGTCTTT
TGTGGAACCTACAATGTAAATGCAAAGATCATCGCCGACGAGGAAATTCA
GCGGTTAGAAGAATGGCTTTTTCCAGATGCAGGAGAGTTGGCAGACATAT
TTGCAGTTGGTTTTCAAGAGGTCGTGGATTTGAACGCGGTGAATGTAGCC
ATGGATGGCAAGTCTCAGCAAAGAGCGCAGGCCTGGCAAGATAAACTTGA
TGCTGTACTTAACAATAAGAGGCGCGAAGAGCGTTATGTGCTGGTGGCAG
AAAGGCATTTGGTGGGCATTCTCCTTCTTGTCTTCGTCAAGGGGGTGCAT
TCGAAAAAAGTTCGTGAAGTTTACGGGGCCTCTGTGGGCGTTGGTTTGAT
GGGAATGGCGGGCAACAAAGGTGGCGTTTCCATGCGTCTCAAGTTCTATG
ACTCATATTTATGTTTTGTGTGTGCGCACCTGGCAGCGCACAGAGAAAAC
GTTGAAGGCAGAAATAGTGATTTTACTAACATTCTGCAAAAGACGATTTT
TGTCGACAAGGCGCTGAGTAGCGAGGCAGATACACCCGTAACGGGTCAAG
GTGATGTCACCGAGGAGACTCGGAAGTACTTCTCGGAAGTGCTTGACGTA
GAGTCTACTTTACAGACTGGCATTTCGATCTTAGATCATGACGTTGTGTT
CTTTATGGGTGATTTAAATTACCGGCTAGACGAATCTGTGGACACGGAAG
AGTGTTTCGCCAAACTAAAGGCACATGATCTTGATTTTCTGCAGCGCTAC
GATCAGCTCAATATGGAACGAATCCAGGGCCGTGTCTTCTCCGGATTCAG
TGAGTCGCCGTTAAATTTCCTCCCTACCTACAAGTATCAGCCGGGCACTT
CCTCATATGAGCGGCGACCGGAGAAAAAATTGCGTTGCCCAGCCTGGTGC
GATCGTATCCTCTGGCGGGCCAAAGAGCCTGGGCAAGTGCGATGCCTATC
ATACGGGCGGGCGGAGCTTGGCCTCTCAGACCACAAGCCGGTGGCAGCGC
AGCTGCTGACCAAAGTTCGCATGGTTGTGAAAGCACAGCGACAAGAAGTG
GCCGCCGAGATTCACCGCCTTTTGGACAAAGTGGAAAATGACCAACACCC
CAAAGTGACCCTTGAGGTATTTGACAACAGCACCTTAGGTTCTCCGCGAC
CACTGAACACAATTGATTTTGGTCCTGTAAGATACGGCGTGGAATGCAGG
CAAGCTCTTACAATTACCAACGTGTCAAATGTAGCAGCTCACTTCCGTTT
TGTTCCCAAACTTGAGGAGGAGACTATCTGCAAAAGTTGGCTCAGCATCC
AGCCTCGCTTCGGAATGTTGCTACCCAATGAGGTTGGCCAAATAAATTTT
AAAATTTTAATAGACCTTAAAACGGCTAAGATGCTCAACACAGGACGTGA
CTTGCTGGATGACATTTTAATTCTACGCCTCGAGAACGGTCAAGACTTTT
TCTTAAGCGTTGGTGGCACGTACGCTCGATCAGCTTTTGGGATGGATCTA
GAGGATCTCGCCAGTTGCCACGGGCCTGTTCGCTTTCTTCCCCTCACTGC
AGCAAAGTGGTCCCAGTTCCAGTCGAGCACTTCGACCGCAGACAAGCCCC
ATCTGCCACCTACATCGGTTGGAGGTCCAACACTCTCTGTACCAAAAGAG
CTTTGGCGGTTAGTCGATGCTCTTTACCGTCGAGGTCTCACGGAAAAAGA
CCTCTTTATCCAACCGGGTGTTTTGACTGAAGTTGAAGCTGTGCGGGAGG
CTCTCGACACGGGCGAAGAATTGGAAGAGAACGTTTCCGTGCATTCTCTC
ACAGAAGTCCTCCTAAGCTTTCTCACGTCGCTTGCCAGTCCTGTGATTCC
GAGAAATCTCCTTCCTTCTGTCGAAATTGATGCTCAAATATTACGGCCTT
GGACAAGACGCTTCTTGGAACTGCTACCACCCTTGAACTACAATATTTTC
GTCTACCTAATTTCTTTTTTCCGCGAAGTATTGAAGTATCATGAGTCTAA
CCGGCTCAATACTGAGAAATTGGCTACAATATGCAGCAAGACCTTTTTGC
CATGCAATGAGCTCCATTGGGGCGACTCAGTCGAAGTGGCTAGCGGTCCA
GCAGTTGGAAAAGGTGAGGAGCACCAGCGCCTTCAAAGTATGCAAGTCAT
CTTTCATTACTTCCTGACCACAAGCGTCTTTTGA

Synonyms

Publications