rna1466, rna1466 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1466
Unique Name	rna1466
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1578
Alignment location	CM002457.1:709224..712243 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100007g114.6470.mrna
Orig protein id	gnl\|cribi\|Naga_100007g114.6470
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:709224..712243 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g114	gene1416	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29143.1	cds1463	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1466	rna1466-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:709224..712243-
coding sequence from alignment at CM002457.1:709224..712243-

mRNA sequence

>rna1466 ID=rna1466|Name=rna1466|organism=Nannochloropsis gaditana|type=mRNA|length=1578bp
ATGATTGGCCTTCAACATCATTCATCGCTCGCACCTACCGACGCTGCGAT
CATTTTGCCCCAGGGTCCTCGACTCTGTTCCGAAATCTGGTCGGCAGGGC
AGAACGAACAACGCCACATTTACGAAGAAGTGATCGACGAGGAGGATTAT
TGGACGAATATGGGGAAGGCGCATAATATTGGTCTGTGCTTAGTATATGC
CCTTGTAGGGTTTGTTCCGAGCTTCCTTTCGACTCCACTGGCGGTCTATT
TGGTGCGCTCACTTAACGCACATCCTGTGATACAAAACCAAGTGATGATT
TGCACGTCTCTCCCCTGGGCGTTTAAATTTTTTTTGGGGTTCACATCGGA
CGCAATGCCCTTGTGTGGAGAACGCCGCAGACCGTATATTCTATTCGGCG
TCCTTCTTTGGGGCAGCAGTCTGGTTTGCCTGGGCTTGCTGGATACGCCC
TCAGCGCCAACGCTTGGTATTGGGCTTTGCATTTCCACCATGGGAATGGT
AATGTGCGACACGATCTCTGACGCGATGATTGTGGAGAGAAGTACGAAGG
AGGATGAGGATGACCATGGGCACCTCCAAAGCCTGGTTTACACTGTGCGT
TTCGGATTTGCGGTGCTTGGTTCAGTACTCGGCAGTGTAGTTTACAATGA
AACCTGGACCTACAGTCTGTCTTTTGAAAAGATCATGTGTCTTACGGGAT
TGGCACCCTTACTTGTGCTACTGCCTTCGATAAGCTTTCTCAAGGATATG
CACCGCTCACTCACTGGAATGGCTGCCGGCGGCGTAGGCATAGATGATCG
CCCGTCAGTGTCGCATCAACTGCAGCAGATATGGGAAACAGTAACCCTTC
GCGTCGTGTTCCAACCAATGACTTTCATATTTATATACAATCTCTTTCAA
GTGCCGAATGTATCCTGGAACTCTTTCCTTCAGCTGACTCTGGATTTCAC
GCCGGTGATGTTAGGAGCTCTATCTTTCGGAGGTCGGCTCATGACTTTCG
TAGGGATACTCATTTACAAGCGGTATTTCCTTCGTTCCAGCTGGCGATCA
GTGTACATCTTTTCTACGTGCCTGCTGGCAGTGCTAAGCGTTCTGCAGCT
TTTACTTATATTTCACATCAACGAGTACCTTGGTATCTCCAATTTTCTGT
TCTCCCTCGGCGATGACGTGATGACTGCCTTCATAAGTGGTATGCAGTTC
CTTCCCTTAACTATCGTGTACATGAAACTCTGCCCCGGCGGGAGTGAGGG
AGCGACGTATTCTATGCTTACGACCTTTTCCAACCTGGCTCTTATTGTGG
GCAATTCGCTGGGGTCCCTTTTGTCACTAATATGGGATGTGAGCAACAGC
GCCTTGAGGCGAGGCGACCTTCGTGGATTGTGGCGGCTTACTGTGCTCAC
ATCGTGTGTCTCTCCTGCGCCCCTGATGCTCTTGTTCCTTCTCCCAATGG
ATCGTGAGCAAGAAAATAAGATGCGTGACCGCGCTGGGGCCAATAAGTGT
GCAGGTCCGGGAATAACAGGAATTAAAACGCTACGTGCAGCCTCGGCATT
TCTGATTAGAATTGCACTAGTTGTCTGA

protein sequence of rna1466

>rna1466-protein ID=rna1466-protein|Name=rna1466|organism=Nannochloropsis gaditana|type=polypeptide|length=500bp
MTGSVTPLWYGNHCQRAMPCMGILFALLYIVFLLRHGDWMSKWDEVKAGP
SQRDLLVLNSRNLFAWWQHNDSAFTMENDYSKEGLWESESLPFGEKTLVI
YSVHNDPSHDTTSYENLDFFLRVGVDQESERFVDYLFLVPSAIFHSFNLT
SGRKGDDMPMFPSADHVRVMERPHDCLGTSGLRSLITDNDWRGGIKHGAR
ISSIPLNMNALLSHYSHFILLDSTVRGPFLPRYVHRARSGGSRWDSPQAV
KSWVSVLTDRVGPEVKLVGRSVSCEPELHVQAPVWATDRQGLRLLLKNGV
LDCAMEEASARERHELGATRAVLNAGYHVDCLMLRYQGINLARLREYGLP
CTARDNPSSPLLNDGLPVNPLEVIFVLANRHFLASDALVRRYTDYFLGRV
DLEDNQATTLRGQAALEARRQRLAGMVASCGATLDRKHLATRCPGCVSGK
SLEVDQEIFIQNHVMKGYDFQFSVPTTIANHPPQAFCEAFARYQAPDLTP

mRNA from alignment at CM002457.1:709224..712243-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1466 ID=rna1466|Name=rna1466|organism=Nannochloropsis gaditana|type=mRNA|length=3020bp|location=Sequence derived from alignment at CM002457.1:709224..712243- (Nannochloropsis gaditana)
GGCGGCACGTGTGATGGTGATCAGGCGGGAGTCCCGCGAGCACTCGATCT
GCCTCATCCATCGCAATTGTCTCTCAATGCCACAGCAGAAGTGTGAATAC
TAATAGCAGATATGCCTGGAGGACATTGTGCCGTGGACTAGTGTAAATAT
CCGAAGCTGTGGCGAAGGAGGCTGCACCACCGAGACGACTTCTGTCACAA
TGACAGGATCAGTCACGCCGCTCTGGTACGGAAATCACTGTCAGCGTGCA
ATGCCATGTATGGGAATTCTGTTTGCCTTGCTATACATTGTCTTTTTATT
AAGACATGGGGATTGGATGTCGAAGTGGGATGAGGTGAAGGCAGGCCCCT
CACAACGGGATTTGCTCGTCCTCAATTCAAGAAATCTATTCGCTTGGTGG
CAACACAATGACTCGGCTTTCACAATGGAAAATGACTACTCAAAAGAAGG
CCTTTGGGAATCAGAATCTTTGCCGTTCGGGGAAAAAACTCTGGTTATTT
ACAGCGTACATAATGATCCATCGCATGACACGACATCCTACGAGAACCTG
GACTTCTTTTTGAGGGTGGGCGTTGATCAAGAATCAGAACGCTTTGTGGA
TTACCTTTTTCTAGTTCCATCAGCAATCTTTCACTCATTTAACCTCACTA
GCGGTCGAAAGGGAGACGACATGCCAATGTTTCCCTCTGCTGATCACGTT
CGCGTGATGGAACGACCACACGACTGTCTAGGCACCAGCGGCCTGCGCAG
TTTGATCACCGACAACGATTGGAGGGGCGGCATCAAACATGGCGCAAGAA
TTTCAAGTATACCATTGAACATGAACGCTCTTCTAAGCCATTATTCTCAC
TTTATTCTTCTAGACTCGACAGTGCGGGGTCCTTTCCTACCGCGGTATGT
GCATCGGGCGCGCTCAGGAGGGAGTCGATGGGACTCTCCTCAAGCAGTCA
AGTCTTGGGTAAGTGTACTCACAGACCGGGTGGGGCCTGAGGTCAAACTT
GTCGGTCGAAGTGTCAGCTGTGAGCCCGAGCTGCACGTGCAGGCCCCCGT
CTGGGCGACAGACCGCCAAGGTCTCAGGCTACTCCTGAAAAATGGCGTTT
TAGATTGCGCCATGGAGGAAGCCAGTGCCCGAGAGCGGCACGAGCTGGGT
GCCACCCGGGCGGTCTTAAACGCTGGCTACCATGTGGATTGTCTCATGCT
TCGCTATCAGGGAATCAACCTTGCACGCCTCAGGGAGTACGGTCTGCCAT
GCACTGCCCGGGACAATCCCAGTTCTCCCTTACTTAACGACGGGCTACCT
GTCAATCCTCTAGAGGTTATTTTCGTCTTGGCCAATCGTCACTTTCTGGC
ATCGGATGCCCTTGTGCGCCGCTACACTGATTACTTCCTAGGGCGTGTGG
ACCTCGAAGACAATCAGGCTACGACGTTACGTGGTCAAGCAGCCTTAGAG
GCCCGTCGCCAACGCTTAGCAGGCATGGTAGCCAGCTGCGGAGCCACATT
GGACCGCAAACACTTGGCAACCAGATGTCCTGGCTGTGTATCGGGGAAGT
CGCTCGAGGTGGATCAGGAGATTTTTATCCAAAACCATGTCATGAAGGGT
TACGATTTCCAGTTTTCTGTCCCGACAACAATCGCGAATCATCCTCCGCA
AGCATTTTGCGAGGCATTTGCTCGCTATCAGGCACCCGACTTGACCCCTT
AAATGCACACAAATTCTGAAGCTATCTTGTATGTTACGAAACATGTGTTC
GGCTTCAGGTCAGGAGGTGGAATTTTGGATGTCTCAGTATTTGAGTTAAA
AAAATTATGGAAACGCCCTGATTGCTTAAGCAAATGAGTCATATGCTAGT
TATTATGTACACAACGACAGAAAAGTGGTGAGACGAAAATGTCAAGCGCT
TCGAAAGTATTACCAGTTTTACAGGATTGACCTTCCCTTTGCCAATCTGT
CAATTACGTCGACGTTCATCGTCGCTACAATGCCGTGTGAGATAAGTTGA
TCCAAATAAATGGAGAACCTTACATAAGCCCCCCCTTCCTTGTGAACAAA
GTCCATTTCGGCACTACCTCTGGTGGCTTTCTTTTTCTTTTTCCCCCAGC
AAGCGAAGGAGAAGAGATCAGAAATTGTTTCAATTAGTCCTGTGACTTGA
CAAATACGATATAGAGTATGCAGATGCGTAAGATGGGATGCATGTAAGTG
AGCACCAAGCAAAATGCATGAATAGAAGCAAAACGCATAGAAGTCATCAC
ATAAATTGGATGAGGAACGATGTGACCATGTAATGGTTCACAAGCCAAAA
CTGAAATGGGTGAAGGCGAAGTTCATCTCCCGTCCGATCGCGGTGCAACT
CACGGATCGTCTCGTTGCACTCGTCCGTGCCAGCAACGATCATCACAACG
TCGTGAAACCGCAGGTATACGACAGTGACTTCACCGTCACGGAAAAATTG
TGGCAAAGAGGCCACTTGCCAATTTTGCCCTGTTCTTCGGTACAGAGCTC
GTTCCCATTGAAGTCGACCACTGTTGTGCCCCATGGCCTGAGATGGAAAC
ACTTTGCCATATAGAACAATGAACTCTGCATTTACAATGTAGACCGAGTG
CAAGGGCATACGCTGTGAATCAAGAGCGAAGTGATGGGGGGGGAATGAAA
GAGTATGAAGGTGAGAAATTGACATGAAATCGAAGCGATAGCACATCAAT
CCCTCTAAAAAGAGCGCTGAGTAGGCTTCATTATTTCAATTCATGATGCC
GCTGGATGAGTTTTGGCTCAAACACACCAAAATGACACTCTGAAATCTTG
TCTTGTCTTCCAGACGCCTGGACCGCTACTTCTCAATCCATGTTCATATA
CATGTGTCTTTTTTACACGAGTTCGTCAAGCCCCACTATACAAGTGTACA
CGTCCCATCATGTCTTGCTCCCTGCCTAAGAAAGTTTCAGACAACTAGTG
CAATTCTAATCAGAAATGCCGAGGCTGCACGTAGCGTTTTAATTCCTGTT
ATTCCCGGCTAAAATTCTGA

Coding sequence (CDS) from alignment at CM002457.1:709224..712243-

>rna1466 ID=rna1466|Name=rna1466|organism=Nannochloropsis gaditana|type=CDS|length=1503bp|location=Sequence derived from alignment at CM002457.1:709224..712243- (Nannochloropsis gaditana)
ATGACAGGATCAGTCACGCCGCTCTGGTACGGAAATCACTGTCAGCGTGC
AATGCCATGTATGGGAATTCTGTTTGCCTTGCTATACATTGTCTTTTTAT
TAAGACATGGGGATTGGATGTCGAAGTGGGATGAGGTGAAGGCAGGCCCC
TCACAACGGGATTTGCTCGTCCTCAATTCAAGAAATCTATTCGCTTGGTG
GCAACACAATGACTCGGCTTTCACAATGGAAAATGACTACTCAAAAGAAG
GCCTTTGGGAATCAGAATCTTTGCCGTTCGGGGAAAAAACTCTGGTTATT
TACAGCGTACATAATGATCCATCGCATGACACGACATCCTACGAGAACCT
GGACTTCTTTTTGAGGGTGGGCGTTGATCAAGAATCAGAACGCTTTGTGG
ATTACCTTTTTCTAGTTCCATCAGCAATCTTTCACTCATTTAACCTCACT
AGCGGTCGAAAGGGAGACGACATGCCAATGTTTCCCTCTGCTGATCACGT
TCGCGTGATGGAACGACCACACGACTGTCTAGGCACCAGCGGCCTGCGCA
GTTTGATCACCGACAACGATTGGAGGGGCGGCATCAAACATGGCGCAAGA
ATTTCAAGTATACCATTGAACATGAACGCTCTTCTAAGCCATTATTCTCA
CTTTATTCTTCTAGACTCGACAGTGCGGGGTCCTTTCCTACCGCGGTATG
TGCATCGGGCGCGCTCAGGAGGGAGTCGATGGGACTCTCCTCAAGCAGTC
AAGTCTTGGGTAAGTGTACTCACAGACCGGGTGGGGCCTGAGGTCAAACT
TGTCGGTCGAAGTGTCAGCTGTGAGCCCGAGCTGCACGTGCAGGCCCCCG
TCTGGGCGACAGACCGCCAAGGTCTCAGGCTACTCCTGAAAAATGGCGTT
TTAGATTGCGCCATGGAGGAAGCCAGTGCCCGAGAGCGGCACGAGCTGGG
TGCCACCCGGGCGGTCTTAAACGCTGGCTACCATGTGGATTGTCTCATGC
TTCGCTATCAGGGAATCAACCTTGCACGCCTCAGGGAGTACGGTCTGCCA
TGCACTGCCCGGGACAATCCCAGTTCTCCCTTACTTAACGACGGGCTACC
TGTCAATCCTCTAGAGGTTATTTTCGTCTTGGCCAATCGTCACTTTCTGG
CATCGGATGCCCTTGTGCGCCGCTACACTGATTACTTCCTAGGGCGTGTG
GACCTCGAAGACAATCAGGCTACGACGTTACGTGGTCAAGCAGCCTTAGA
GGCCCGTCGCCAACGCTTAGCAGGCATGGTAGCCAGCTGCGGAGCCACAT
TGGACCGCAAACACTTGGCAACCAGATGTCCTGGCTGTGTATCGGGGAAG
TCGCTCGAGGTGGATCAGGAGATTTTTATCCAAAACCATGTCATGAAGGG
TTACGATTTCCAGTTTTCTGTCCCGACAACAATCGCGAATCATCCTCCGC
AAGCATTTTGCGAGGCATTTGCTCGCTATCAGGCACCCGACTTGACCCCT
TAA

Synonyms

Publications