rna1464, rna1464 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1464
Unique Name	rna1464
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1206
Alignment location	CM002457.1:703475..706810 -

Link to JBrowse

Properties


Property Name	Value
Product	checkpoint kinase
Orig transcript id	gnl\|cribi\|Naga_100007g117.6502.mrna
Orig protein id	gnl\|cribi\|Naga_100007g117.6502
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:703475..706810 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g117	gene1414	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29175.1	cds1461	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1464	rna1464-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:703475..706810-
coding sequence from alignment at CM002457.1:703475..706810-

mRNA sequence

>rna1464 ID=rna1464|Name=rna1464|organism=Nannochloropsis gaditana|type=mRNA|length=1206bp
ATGAAGGGCCTCGCGGCGTCTTCTAGCCTTGTGGCCGCTGTCTTCATGAT
TTCCAAAGTTGTACAGGCCTTTATTCCCCGCCTTGATTTTCCTCAAACCT
CTGTGCTCATCACCGGCACGACTTCAACAAGGACAAAAGAAAGTGGTGGT
CGAGATGCAGTGGCGCATTCTCCGTCAGATGTTGTCTCAAGTTCCTCATC
CATACCTCTGTGTGCTGAAGTTGTATTGCGACGATCATTTCCAAATGTGG
AAGTCGCGCCAGGCTTTTTGTCCGCTATCCGTCCGAATAGCAAAAGCACC
GATACTGGTCGCGCGCTCATCCGCGCGAAGGCATTTGCGAATATGGCTCC
GCGTATCATAGTCTCTCGGGGTTGGAATGTGCTTTCCGAAGACTTTGTCT
ATTACAGCAGCGCCACAGGCCCTCTAGATCGTGCAGAATACTTAGGCTTG
GTCGCCATCATGGAGCGAGCTCTCCCGGACCTCCGGCAGGATTCCTCGCG
ATTTGAGGTCGGTGCAGATGGGACAGTCCTTTATGTCTCTCAGGCTGTGG
GTACTTTTACGGGTCAGTTACAAATCGGCCATGACATTCATGAGGGTAGT
GGCCTCAAATATCAAGGTCTTAAGGAGGTCTGCGTGGTGGCATTTAACGA
GGACGGGCAGTTACAAAGCCTTAGCGCAGGCCTGGTGGTGGAGGAAGGTA
GCGACGAGGATGAGGAGTTGGTAGCGGCCGAAGCACTTTCAGGCCTGCTG
AAGCGTCTAGAATCCCATAAACAGAAATTAGAGATGACACCTACAGGGAA
GTCGGCGCGGGAGAAGATTCAGCAAGATATTGACAACACGCAGGCAAAGA
TTGAGGCCTTCGAGAAGGACAGCGAGACAGTCAAGGTCGCACATGAAGCT
GGGCTTGGAGGCCTACTCGGAGCGCTGGGAGTATGTGTTCCCGAAGCCGG
AGATCTTAGTAGCGCCTTGGCGGGGCAGGGGTTGGACGAGTTGTTTGTGA
TGGACGATCTGGACCTCATGTCTGTGCCTACGGAGTGTGAAACACTGCTG
GAAGATAAGGGTCCCATGACGAATGCTGTATGTCGAGAAAAGGCATCACG
AGCTCATGTGCATGTAGTCATGTCCACAGCTAAACAAGAATTGCATACGC
CAAAGATGATACACTATTTAACACTTTTAATTTGTGGAGTAACAAATTTG
TTCTAA

protein sequence of rna1464

>rna1464-protein ID=rna1464-protein|Name=rna1464|organism=Nannochloropsis gaditana|type=polypeptide|length=987bp
MLLSPQSDAPCARAGGASGRDDNESFSSRGPTQVEDDFLDSYEERTLMSG
DTQQEPGFTNGDATRDAVLEPWGRLLPLKRGAAHIKLLFRPAETSHCQAN
TYILGRGRSCDIRLDDVRISSQHCRVYCLESREPGGRITFKVYVEDMSSN
GTFVNRRVRLAKGQRRLLNSGDELCLVKAREDQDYEAASYVFIPMEPKDR
QQRQPRQAGGMPSPSFESSLPTTSIPPPTPAIASCVFSSASSPRAAQTVC
NQNPCSRPLVPHDGKHSFAGKYVRRIEEFYDIREEIGRGTCGRVHVALHR
KTGESWAIKIIETRKFGLTPGLSPKELVQEAEVLRSIAHPYVVRLQDIFQ
TEDVIYLVMELVQGGDLFDRIVDRGRYPEATARKLIRNVLQAVQYLHARN
IVHRDLKPENILLVHRDSDVDVKLTDFGLAKRTTSEGLKTFCGTPQYFAP
EVLKRRNTTQGTGRYGREADMWSLGVILYIVLSGTPPFDDSTLFEQIRTA
TYTFEGPEWESVSTQAKDLVSRLMTASPATRLEVDQALSHPWFATSLPPF
DVSKTDDQRSALAEGSRNNGSPSSMTDGEDEIVVAAREEHCKNIVTVTET
SHCPKGESSITTSVMVLSKNRKSKKDQEKMDSSLYEANCLKQAQKEMTGP
PGVPPLTLQNAAALRQATTKQNQQYKQRQGLGANLQILDSPLPSAFEASR
EKGRDKRLDIVGRDCGKGPVKRRKPGRKTFEVGVTTVELPDDKIAEYSSA
EEGETEEKLMISQAVESSSLQGFGEAFELDDGPTSQSGITGAMVQREFVG
VARIAESAVSEAAAGIEYLRDRFASTRRNSKQSTAGISPSPAGPIALANV
EEKRLVRGQGMLSVAIIQRKSTSSKEKEKRVAYDGLQQEKTYLTSKNVKD
PAAPPKASKAAIHDTHSALALPVSPWNADTASSVAHSSTSSPRQPVEATS
KPRGQNVIRERKTKQTMLTQFLYKGGGEKMAERKLRE

mRNA from alignment at CM002457.1:703475..706810-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1464 ID=rna1464|Name=rna1464|organism=Nannochloropsis gaditana|type=mRNA|length=3336bp|location=Sequence derived from alignment at CM002457.1:703475..706810- (Nannochloropsis gaditana)
ACCATGCTCTCAGCCAGGAAGACTAATGAGAAGGATAGAGCGTACTCGAC
TCCTCGGGGCTGTGTACCTTGAAAACTCGTGCTCGGTTTCTGTACCCGTA
CCAACATCGCTAGCATATAGGGACAGCTTATATATTGTGTAGCAACCCAC
TCATTTGCCTGTCCACGAATGTCAATTACAGCTTACACCTAGGCACAGTC
TTCGTATTCACGGTGTAGAGTTTATTGCCCACGTGCAATTGTTGGGGAGC
AAGGTGGCGACCAAACTATTCGGTCATATACGGCGTTCGTTTGATGCTTC
TGTCGCCGCAAAGTGACGCGCCATGTGCTAGAGCGGGCGGTGCCAGTGGA
AGAGATGACAATGAGAGCTTTTCTAGCCGTGGGCCCACACAGGTTGAGGA
CGACTTTCTCGATTCGTACGAGGAAAGAACGTTGATGAGCGGAGATACTC
AGCAGGAGCCCGGCTTCACCAACGGAGACGCGACACGAGATGCAGTTTTG
GAGCCTTGGGGTCGCCTCTTGCCTCTCAAACGTGGTGCTGCACACATCAA
ACTTCTGTTCCGGCCGGCTGAGACATCACATTGTCAGGCCAATACTTATA
TTTTGGGAAGAGGGCGATCGTGCGACATTCGGTTGGACGATGTTCGCATT
TCCTCTCAGCACTGTCGCGTTTACTGTCTGGAGAGCAGGGAGCCTGGAGG
TCGCATAACTTTCAAAGTATATGTTGAGGATATGAGCTCCAACGGAACAT
TCGTGAACCGTCGGGTTCGATTGGCCAAAGGGCAGCGCCGTTTGCTTAAC
TCTGGGGACGAGCTGTGCTTGGTCAAGGCGAGGGAGGACCAGGACTACGA
GGCCGCCTCTTATGTCTTCATTCCCATGGAGCCTAAAGATCGACAGCAAC
GCCAACCTCGCCAAGCAGGGGGGATGCCGTCTCCGTCGTTCGAGTCCTCT
CTGCCGACCACCTCGATCCCCCCGCCTACGCCTGCAATAGCGTCCTGTGT
CTTCTCGAGTGCATCTTCTCCAAGGGCCGCACAGACAGTGTGCAATCAAA
ATCCATGTAGCCGGCCGCTGGTGCCACATGATGGTAAACACTCCTTTGCA
GGCAAATATGTAAGGCGCATCGAGGAATTCTACGACATACGAGAGGAAAT
CGGGCGCGGCACGTGTGGACGTGTCCATGTGGCTTTGCACCGCAAGACTG
GGGAGTCCTGGGCGATCAAGATCATCGAAACGCGCAAATTTGGCCTTACG
CCGGGCCTGTCTCCCAAAGAACTGGTGCAAGAAGCGGAGGTGCTTCGCAG
TATCGCTCATCCCTATGTGGTGCGGTTGCAGGACATCTTCCAGACGGAGG
ACGTGATCTACTTGGTCATGGAACTGGTGCAAGGAGGCGACCTTTTCGAC
CGCATCGTTGACCGAGGTCGATACCCGGAGGCAACCGCGCGCAAGCTGAT
ACGGAACGTGCTGCAAGCGGTGCAGTATCTACACGCCCGTAACATCGTGC
ATCGGGACTTGAAACCCGAGAACATTCTGTTGGTGCACCGTGACTCGGAC
GTGGATGTAAAGCTCACAGACTTCGGCCTGGCGAAGCGCACTACTAGCGA
AGGTCTCAAAACGTTCTGTGGTACCCCTCAATATTTTGCTCCTGAAGTTT
TGAAGCGTCGCAACACCACGCAAGGAACGGGCCGCTACGGTCGGGAGGCA
GACATGTGGTCGTTGGGCGTGATTTTGTACATTGTTCTGAGTGGGACGCC
ACCATTTGACGATTCTACGCTTTTTGAACAGATACGCACAGCCACTTACA
CATTTGAGGGGCCAGAGTGGGAAAGTGTGAGCACGCAGGCCAAGGACTTG
GTGAGCCGGCTGATGACCGCCTCCCCAGCCACTCGCTTGGAGGTGGACCA
AGCCCTGTCCCATCCCTGGTTTGCAACCTCATTGCCACCTTTTGACGTAT
CTAAAACAGACGATCAGCGCTCAGCTCTTGCTGAGGGATCAAGAAATAAT
GGAAGTCCTTCATCGATGACTGACGGAGAAGACGAAATTGTCGTAGCGGC
ACGTGAGGAGCATTGTAAAAACATTGTCACGGTCACCGAGACATCACATT
GCCCGAAAGGCGAGTCCAGTATTACGACTTCTGTAATGGTGCTTAGCAAG
AACAGGAAATCGAAAAAGGATCAAGAAAAAATGGATTCATCATTGTATGA
GGCAAATTGTCTCAAGCAAGCTCAAAAAGAGATGACGGGTCCGCCCGGCG
TGCCTCCGCTGACGCTCCAAAATGCAGCAGCCTTGCGACAGGCTACAACA
AAGCAAAACCAGCAATACAAACAGCGCCAGGGTTTGGGTGCTAATTTACA
GATATTAGATAGTCCACTGCCTTCTGCTTTTGAAGCGAGCCGAGAAAAAG
GGCGTGATAAAAGGCTGGATATTGTAGGACGCGACTGTGGAAAGGGACCT
GTAAAGCGGAGGAAACCGGGGAGGAAGACATTTGAAGTAGGGGTGACAAC
AGTAGAGTTACCCGACGATAAGATAGCTGAGTATTCAAGCGCCGAAGAAG
GTGAAACTGAAGAGAAACTGATGATTTCGCAGGCCGTCGAGAGCTCTTCT
CTCCAAGGGTTTGGCGAAGCTTTCGAATTAGACGACGGGCCTACCTCACA
GTCAGGAATTACCGGAGCGATGGTCCAGCGAGAATTTGTGGGAGTAGCAA
GAATAGCAGAAAGTGCTGTCTCTGAAGCCGCCGCAGGAATAGAATACTTA
CGTGATAGATTTGCTTCCACAAGAAGGAATTCGAAGCAGTCAACTGCCGG
GATATCGCCAAGCCCTGCGGGGCCGATCGCCCTCGCTAATGTGGAGGAAA
AGCGACTCGTCCGAGGTCAGGGGATGCTATCAGTGGCCATTATTCAGCGA
AAATCGACCTCTAGCAAGGAAAAGGAAAAGCGGGTAGCTTACGACGGACT
GCAGCAAGAAAAGACTTATCTAACCTCGAAAAATGTCAAAGATCCGGCTG
CTCCGCCCAAAGCTTCGAAAGCCGCCATTCATGATACACACTCGGCTTTG
GCTTTACCCGTATCTCCTTGGAATGCGGATACAGCTTCATCAGTAGCTCA
TTCATCTACTTCATCGCCTCGTCAGCCGGTGGAAGCCACGTCCAAGCCGA
GAGGGCAGAATGTGATTCGAGAGCGAAAGACCAAGCAGACAATGCTAACC
CAATTCCTTTACAAAGGGGGGGGGGAGAAGATGGCGGAACGTAAGCTTCG
CGAATGATTTAGAACAAATTTGTTACTCCACAAATTAAAAGTGTTAAATA
GTGTATCATCTTTGGCGTATGCAATTCTTGTTTAGC

Coding sequence (CDS) from alignment at CM002457.1:703475..706810-

>rna1464 ID=rna1464|Name=rna1464|organism=Nannochloropsis gaditana|type=CDS|length=2964bp|location=Sequence derived from alignment at CM002457.1:703475..706810- (Nannochloropsis gaditana)
ATGCTTCTGTCGCCGCAAAGTGACGCGCCATGTGCTAGAGCGGGCGGTGC
CAGTGGAAGAGATGACAATGAGAGCTTTTCTAGCCGTGGGCCCACACAGG
TTGAGGACGACTTTCTCGATTCGTACGAGGAAAGAACGTTGATGAGCGGA
GATACTCAGCAGGAGCCCGGCTTCACCAACGGAGACGCGACACGAGATGC
AGTTTTGGAGCCTTGGGGTCGCCTCTTGCCTCTCAAACGTGGTGCTGCAC
ACATCAAACTTCTGTTCCGGCCGGCTGAGACATCACATTGTCAGGCCAAT
ACTTATATTTTGGGAAGAGGGCGATCGTGCGACATTCGGTTGGACGATGT
TCGCATTTCCTCTCAGCACTGTCGCGTTTACTGTCTGGAGAGCAGGGAGC
CTGGAGGTCGCATAACTTTCAAAGTATATGTTGAGGATATGAGCTCCAAC
GGAACATTCGTGAACCGTCGGGTTCGATTGGCCAAAGGGCAGCGCCGTTT
GCTTAACTCTGGGGACGAGCTGTGCTTGGTCAAGGCGAGGGAGGACCAGG
ACTACGAGGCCGCCTCTTATGTCTTCATTCCCATGGAGCCTAAAGATCGA
CAGCAACGCCAACCTCGCCAAGCAGGGGGGATGCCGTCTCCGTCGTTCGA
GTCCTCTCTGCCGACCACCTCGATCCCCCCGCCTACGCCTGCAATAGCGT
CCTGTGTCTTCTCGAGTGCATCTTCTCCAAGGGCCGCACAGACAGTGTGC
AATCAAAATCCATGTAGCCGGCCGCTGGTGCCACATGATGGTAAACACTC
CTTTGCAGGCAAATATGTAAGGCGCATCGAGGAATTCTACGACATACGAG
AGGAAATCGGGCGCGGCACGTGTGGACGTGTCCATGTGGCTTTGCACCGC
AAGACTGGGGAGTCCTGGGCGATCAAGATCATCGAAACGCGCAAATTTGG
CCTTACGCCGGGCCTGTCTCCCAAAGAACTGGTGCAAGAAGCGGAGGTGC
TTCGCAGTATCGCTCATCCCTATGTGGTGCGGTTGCAGGACATCTTCCAG
ACGGAGGACGTGATCTACTTGGTCATGGAACTGGTGCAAGGAGGCGACCT
TTTCGACCGCATCGTTGACCGAGGTCGATACCCGGAGGCAACCGCGCGCA
AGCTGATACGGAACGTGCTGCAAGCGGTGCAGTATCTACACGCCCGTAAC
ATCGTGCATCGGGACTTGAAACCCGAGAACATTCTGTTGGTGCACCGTGA
CTCGGACGTGGATGTAAAGCTCACAGACTTCGGCCTGGCGAAGCGCACTA
CTAGCGAAGGTCTCAAAACGTTCTGTGGTACCCCTCAATATTTTGCTCCT
GAAGTTTTGAAGCGTCGCAACACCACGCAAGGAACGGGCCGCTACGGTCG
GGAGGCAGACATGTGGTCGTTGGGCGTGATTTTGTACATTGTTCTGAGTG
GGACGCCACCATTTGACGATTCTACGCTTTTTGAACAGATACGCACAGCC
ACTTACACATTTGAGGGGCCAGAGTGGGAAAGTGTGAGCACGCAGGCCAA
GGACTTGGTGAGCCGGCTGATGACCGCCTCCCCAGCCACTCGCTTGGAGG
TGGACCAAGCCCTGTCCCATCCCTGGTTTGCAACCTCATTGCCACCTTTT
GACGTATCTAAAACAGACGATCAGCGCTCAGCTCTTGCTGAGGGATCAAG
AAATAATGGAAGTCCTTCATCGATGACTGACGGAGAAGACGAAATTGTCG
TAGCGGCACGTGAGGAGCATTGTAAAAACATTGTCACGGTCACCGAGACA
TCACATTGCCCGAAAGGCGAGTCCAGTATTACGACTTCTGTAATGGTGCT
TAGCAAGAACAGGAAATCGAAAAAGGATCAAGAAAAAATGGATTCATCAT
TGTATGAGGCAAATTGTCTCAAGCAAGCTCAAAAAGAGATGACGGGTCCG
CCCGGCGTGCCTCCGCTGACGCTCCAAAATGCAGCAGCCTTGCGACAGGC
TACAACAAAGCAAAACCAGCAATACAAACAGCGCCAGGGTTTGGGTGCTA
ATTTACAGATATTAGATAGTCCACTGCCTTCTGCTTTTGAAGCGAGCCGA
GAAAAAGGGCGTGATAAAAGGCTGGATATTGTAGGACGCGACTGTGGAAA
GGGACCTGTAAAGCGGAGGAAACCGGGGAGGAAGACATTTGAAGTAGGGG
TGACAACAGTAGAGTTACCCGACGATAAGATAGCTGAGTATTCAAGCGCC
GAAGAAGGTGAAACTGAAGAGAAACTGATGATTTCGCAGGCCGTCGAGAG
CTCTTCTCTCCAAGGGTTTGGCGAAGCTTTCGAATTAGACGACGGGCCTA
CCTCACAGTCAGGAATTACCGGAGCGATGGTCCAGCGAGAATTTGTGGGA
GTAGCAAGAATAGCAGAAAGTGCTGTCTCTGAAGCCGCCGCAGGAATAGA
ATACTTACGTGATAGATTTGCTTCCACAAGAAGGAATTCGAAGCAGTCAA
CTGCCGGGATATCGCCAAGCCCTGCGGGGCCGATCGCCCTCGCTAATGTG
GAGGAAAAGCGACTCGTCCGAGGTCAGGGGATGCTATCAGTGGCCATTAT
TCAGCGAAAATCGACCTCTAGCAAGGAAAAGGAAAAGCGGGTAGCTTACG
ACGGACTGCAGCAAGAAAAGACTTATCTAACCTCGAAAAATGTCAAAGAT
CCGGCTGCTCCGCCCAAAGCTTCGAAAGCCGCCATTCATGATACACACTC
GGCTTTGGCTTTACCCGTATCTCCTTGGAATGCGGATACAGCTTCATCAG
TAGCTCATTCATCTACTTCATCGCCTCGTCAGCCGGTGGAAGCCACGTCC
AAGCCGAGAGGGCAGAATGTGATTCGAGAGCGAAAGACCAAGCAGACAAT
GCTAACCCAATTCCTTTACAAAGGGGGGGGGGAGAAGATGGCGGAACGTA
AGCTTCGCGAATGA

Synonyms

Publications