rna1460, rna1460 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1460
Unique Name	rna1460
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1562
Alignment location	CM002457.1:692531..696484 +

Link to JBrowse

Properties


Property Name	Value
Product	isoleucyl-trna synthetase
Orig transcript id	gnl\|cribi\|Naga_100007g121.6447.mrna
Orig protein id	gnl\|cribi\|Naga_100007g121.6447
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:692531..696484 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g121	gene1410	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1460	rna1460-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29120.1	cds1457	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:692531..696484+
coding sequence from alignment at CM002457.1:692531..696484+

mRNA sequence

>rna1460 ID=rna1460|Name=rna1460|organism=Nannochloropsis gaditana|type=mRNA|length=1562bp
GCGTCCTCCGCAACCTCCGCGTCCACGGCATCCGCCAAGCCCAGTCGGTC
AACCATGCGTCTCTTTGTCTCGATGAGGAAGCGGGAAACCCCACCCAAAG
TAATGACGAAACTGACCGCCGGCAAAGACGGGTACCAAAGTGGTCGAGAG
GAGGGCGAGGTGCTAGACGAGGAAGGTACGCCTTGTGCCAGTCGCACGAT
TACTGGAGCGCGTCGTTCCCCTCCATATACTTGGGATGATACTTGCCCGA
TTTCCCCTCTAGACCTTATATCATGCCGTAAGCTTTGTTTGTCTGCAAGG
GACACTCCCAAGGATAATGTCTCATTTGCTTTCGCGACACGCACCGCAGA
CACTCAATCGGAGGCGGCTGCGGTCGAGGAGCGGGGCGGACGAGAGCGGC
AGGATATGAATGAGGAGAGTATGGAGGAGGAAGGTCACATGGATCTATCA
GAGGCAGCGGCGGGGCTGGTGCAGGCTGCGCTGCGCATTGCGGCCCCACG
TGTGTTGCTTCCCGGAGACACAAGCGAGATGCCCGACCACCTGTCCAGAG
CTAAGCTTGGCAACGGGCTCGTCAGTGCACACTCACCTCCAAGGGCAGCA
AAGGCCACCAAAGCTGGGATTCTTCGTTTTCAGGCGCCTAACACCTACCG
AATCGACAATCAACAACGCAGGTATGTGCCAAAAAGGGATGACATGGTCC
TGGGCATTGTTGAGGACCGAGGGCCTGAGAATTATCGTCTCAACATCTTC
GCAAGTGCACCAGGATATCTACCACATTTAGCATTCGACGGTGCCTCGAA
ACGCAACAAGCCCGTTTTGAGGGCTGGATCGTTGGTCTACTGTCGAGTTG
GTTTGGCATGTATAGATGTGGACACCGAGCTCACGTGCACTGTCACACAG
GGCATTAAAAAGGATTGGATGACCGGAGAGTCAACCTTCGGAGAGTTGAA
GGGGGGTACCGTCACGCGCTGTTCTTTAGGCCTATGCCGACAGTTATTGG
ACAAGGACTGCCGTGTTCTTCAGGTGTTGCAAAAGCATGGAGTCCCTTTC
GAAGTGGCCGTCGGGAGAAATGGGGCTTTCTACGTGAATGCGAAAGATCA
AGGCATCATCGTGGCCATCGTCAATATCCTTTTGAACTCAGAAATGATCC
AAGATGGGTCCGAAGAGCAAATGGTAAAATTCATATTAAAATCGATCTCG
AATCGACATAGACCCTCAGCGTTGCTTGTACCAATATAAGACCTCTCGCT
TCGCAGTTCAACATTATTTACAAAGTGCGCCTTCACCATTGGTAAGAAGT
GACGATATCATCAAGGGTACGAAAAATCATTCTTTTTCTTTCAGCTACTT
TACTTTCCTTCTTTCCCAACTTGCGCTCAGCTTTTAACAATGCTAGGTCG
CCTTTTCATATGTTAAAGGTATGAAGACTAGGTGCCTCCTCCTGCTCATT
TCCGAGCTTATTACAAAAGTGCGATAAATTGTTTTTTGCACACGCGGCAT
CCCCTGCTGCGAATTTCCATCTACTTTACTAAGGCATACCATTCATACCA
TTCCCGCTGGGC

protein sequence of rna1460

>rna1460-protein ID=rna1460-protein|Name=rna1460|organism=Nannochloropsis gaditana|type=polypeptide|length=1077bp
MARRLLPQATTSVMSRLPTYALMTCLLFLHRSGAQVTWRRGAQCGSFIFL
RNHHVKYRAVSFDLSTTRLRQNLHSAKKQLDDPSDPSNIYRDTVTLPKST
FDQRANAVVREPQIHQFWETEGIYRKLHEGSRKKGAPKFVLHDGPPYANG
DLHIGHALNKILKDFINRYKVLQGFEVRYVPGWDCHGLPIELKVLQSLKQ
ADRQALTPISLRLKARDFALETVERQRASFKRYGIMGDWQQPYLTLQPEY
EAAQIRAFGDMVLKGHIYRGLKPVHWSPSSRTALAEAELEYPEDHVSKSI
YVGFPVTSLEGCPGAAALSTAHPAGAQALRVAVWTTTPWTIPANLAVAVN
TEIDYSLVTHSDMPGEAYLVATDLVDKLAETVFKVSKGGLERLATLKGRD
LVGLRYRHPLIDRESQIVEGGDYITTETGTGLVHTAPGHGQEDYLTGIKY
GLPLLSPVDDAGRFTEEAGERFEGKDVLGDGNLEVIQALNETGALILMEP
YHHKYPYDWRTKKPTIFRATDQWFASVDSFRQDALAAIDTVTWLPDVGKK
RISTMTASRSDWCISRQRSWGVPIPVFYHVDDGSILMDDKTISHLEGVFR
EHGSDAWWTMEVADLLPIEYRERASLYLRGTDTMDVWFDSGSSWAGVLKN
RKDDLQFPADVYLEGVDQHRGWFQSSLLTSVAATGMAPYKAVVTHGFVLD
EKGYKMSKSLGNVVDPIKVIEGGNNKKQDPAYGADVLRLWVSSVDYSSDV
CVGGNILKQVGDAYRKLRNTARYLVGNLHDFDPDRDAVPYDSLPRLDKYI
LGRLSMMIQEVEDAFETFQFSRANQALQRFAVADLSNFYLDVAKDRLYIA
ASNDERRRTCQTTMRLLLEGMATAMSPVLPHMAEDIWQNLPYARPTTSIF
QAGWIPEQRRFPSYENEEWSAVLRLRDDVNKCMEAARREGLIGASLEAAV
YVYAHDPELCKILDGLMGDNSLKYPPTRSNGVDDLRFLLLASQVHIVSTA
AEVTSKCEIVLNKGGDAASGATVGIRRASGKKCSRCWYYGDLSPADATFP
HICSRCVHAVTARGGLKLQQPIVSISK

mRNA from alignment at CM002457.1:692531..696484+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1460 ID=rna1460|Name=rna1460|organism=Nannochloropsis gaditana|type=mRNA|length=3954bp|location=Sequence derived from alignment at CM002457.1:692531..696484+ (Nannochloropsis gaditana)
GACTTATAAGTTTCAGAAGGCTGCACGGTGCTAATGTGTACATTAAGGTT
ACAGCTGAAAAATCTCGTGCAAATATGACTTGCCGCCGGAAATCGGAAAG
TCAAGTCCTGATGCAGACTCAAAAGCAGACAGGTTTCGAAAGCGGAGAAA
GATACGATCGGAGGGCCCTCGGTCGCGTACTCGAGCTGTCCTGATCCTGA
TTTGCGCAAAGTATAAGAAACAATcgattttttttaaagaatACTAACCT
GACATGGCTCGTCGATTGCTCCCGCAGGCAACCACGTCGGTGATGTCCCG
GCTGCCGACCTACGCGTTGATGACGtgcctgctcttcctccacaggTCAG
GTGCTCAAGTAACATGGCGCCGAGGCGCGCAGTGCGGCAGCTTCATCTTT
CTCAGAAATCATCACGTAAAGTATAGGGCCGTTAGCTTTGATTTATCTAC
GACAAGGCTGAGGCAGAATCTGCATTCAGCAAAAAAACAGCTGGACGatc
cctccgacccctcAAACATCTATCGTGATACGGTAACCCTTCCGAAGAGC
ACATTCGACCAACGTGCGAACGCAGTCGTACGTGAGCCTCAAATACACCA
ATTCTGGGAAACCGAGGGTATTTATAGGAAGTTGCATGAGGGtagcagga
agaagggggcaccCAAATTTGTGCTGCACGATGGTCCCCCATACGCGAAC
GGAGACTTACACATCGGCCACGCCCTAAACAAAATCCTTAAAGATTTCAT
CAATCGGTATAAAGTATTGCAGGGCTTTGAAGTACGTTATGTCCCAGGAT
GGGACTGTCACGGCCTGCCAATCGAGCTCAAGGTGCTTCAGAGTCTGAAG
CAGGCAGACCGTCAGGCCTTGACGCCCATCTCATTGCGCCTCAAAGCTCG
AGACTTCGCCCTGGAGACCGTGGAGCGTCAACGTGCCTCTTTCAAGCGAT
ATGGAATTATGGGTGACTGGCAGCAGCCTTACCTTACATTGCAGCCCGAG
TACGAGGCGGCGCAGATCCGAGCCTTCGGGGACATGGTGCTGAAAGGCCA
CATCTATCGCGGCCTCAAGCCCGTGCACTGGAGTCCTTCGTCCCGAACAG
CTTTGGCTGAAGCGGAACTTGAATATCCAGAGGACCATGTATCCAAATCA
ATCTATGTTGGCTTTCCTGTTACATCCCTGGAAGGCTGCCCGGGTGCGGC
CGCCTTGTCTACCGCGCACCCTGCGGGTGCGCAGGCCCTGCGTGTGGCCG
TCTGGACGACCACCCCTTGGACCATCCCTGCAAATCTGGCTGTAGCAGTA
AATACTGAAATCGATTACTCCTTAGTCACTCACTCTGACATGCCGGGAGA
GGCTTACTTGGTGGCCACAGATTTGGTAGATAAACTGGCTGAAACCGTCT
TTAAAGTCTCAAAGGGCGGCTTGGAGCGGCTCGCCACATTGAAGGGTCGT
GATTTAGTTGGGCTCAGGTATCGGCACCCTTTGATTGATCGAGAGTCGCA
GATTGTGGAAGGCGGGGATTACATTACAACCGAGACCGGCACAGGTCTGG
TGCACACCGCCCCAGGGCACGGCCAGGAAGATTATCTAACTGGTATTAAG
TACGGGCTTCCCCTCTTAAGTCCCGTAGATGACGCGGGCCGCTTTACTGA
AGAAGCTGGAGAGCGCTTTGAAGGCAAAGATGTTCTTGGTGACGGGAATC
TTGAGGTAATTCAGGCGTTGAATGAGACAGGGGCCTTGATTTTGATGGAG
CCCTACCACCACAAATATCCCTACGACTGGAGGACCAAGAAGCCTACCAT
ATTCCGAGCTACTGATCAGTGGTTTGCATCGGTCGACTCCTTCCGGCAGG
ATGCCCTGGCAGCCATCGATACTGTCACCTGGCTACCTGATGTTGGCAAA
AAGCGCATCTCTACCATGACCGCGTCCCGGTCTGACTGGTGCATCTCACG
ACAACGCTCCTGGGGCGTGCCCATCCCCGTGTTTTATCATGTGGACGATG
GGTCAATTCTAATGGACGATAAGACCATTTCTCATCTGGAAGGGGTTTTC
CGGGAGCATGGATCAGATGCCTGGTGGACAATGGAGGTGGCAGATCTGCT
TCCCATCGAGTACCGTGAGCGGGCATCGCTTTATCTGAGAGGCACCGACA
CTATGGACGTGTGGTTTGACAGTGGCTCCTCTTGGGCTGGCGTGCTCAAG
AACAGGAAAGACGACTTGCAGTTCCCCGCGGACGTCTACTTGGAGGGGGT
GGACCAACACCGGGGATGGTTCCAGTCGTCGCTCTTGACCAGCGTGGCGG
CGACGGGTATGGCACCCTACAAGGCTGTAGTGACCCATGGCTTCGTCTTA
GACGAAAAGGGCTATAAAATGAGTAAGAGCCTTGGTAACGTGGTCGACCC
GATAAAAGTAATCGAGGGTGGCAACAATAAGAAGCAAGACCCGGCCTACG
GTGCGGACGTCTTGAGACTCTGGGTGTCCTCGGTCGACTACTCCAGCGAT
GTCTGCGTGGGAGGCAACATACTGAAGCAGGTTGGCGATGCGTATCGAAA
GCTTCGTAACACAGCACGGTACTTGGTCGGCAATTTGCACGACTTTGATC
CCGATCGAGATGCTGTCCCCTATGACTCTTTGCCACGCTTAGACAAGTAC
ATTCTAGGTCGCCTATCGATGATGATTCAAGAGGTGGAAGATGCCTTCGA
GACTTTCCAATTTAGCCGAGCGAATCAGGCTTTGCAACGCTTTGCCGTTG
CGGATCTCTCAAACTTCTACCTAGACGTGGCCAAGGACAGACTCTACATT
GCAGCTTCGAACGATGAGCGCCGTCGCACTTGCCAAACGACGATGAGACT
CCTGTTGGAGGGAATGGCGACGGCCATGAGCCCGGTTCTACCTCACATGG
CTGAAGACATATGGCAGAACCTTCCATATGCTCGACCCACCACCAGTATT
TTTCAGGCAGGCTGGATCCCCGAGCAGCGCAGATTTCCATCCTACGAAAA
TGAGGAGTGGTCGGCAGTTTTGCGATTGCGGGACGACGTGAACAAGTGCA
TGGAGGCAGCGCGACGGGAGGGACTAATCGGTGCTTCTTTGGAGGCCGCC
GTTTACGTCTATGCGCATGATCCGGAGCTCTGTAAAATACTGGATGGTCT
CATGGGGGATAACAGTCTGAAGTACCCACCAACTCGAAGCAACGGAGTTG
ATGACCTGCGTTTCTTACTTCTTGCATCTCAGGTACATATTGTCAGCACT
GCGGCAGAAGTAACGAGCAAATGCGAAATTGTCTTAAATAAGGGAGGCGA
TGCTGCCAGCGGAGCTACGGTCGGCATTAGGCGTGCGTCCGGCAAAAAAT
GTAGCCGGTGCTGGTATTATGGCGATCTCTCCCCGGCAGACGCTACTTTT
CCTCACATTTGCTCGCGATGTGTCCATGCAGTAACCGCGCGCGGTGGCTT
GAAGTTGCAACAGCCGATCGTAAGCATTTCGAAATGAAAGATGACTAAAT
CACCGTCAGAAAttggctttctttcctaCCATTTACGTGATTATTAGTGG
AGAACAACTTAAAATGCGATGTGGCGTGTAATTTGTAATTCTTGATGATT
TATACATGGCTAAAGAAGTTGGATAGAGATAGTTGGTGGGTTTGTAATGC
TTCACGAAACCATGCAAGCACATCAACAGGGTTGTTCCATGCACGCTGTT
TGAAGGGGGACCGACGACTTTGAGAAGGGAGTTCAAAAGGTGCCAACAGT
GTCCCTTCATTGGCGACTTTGTGGTCATGTCACCTTGCGCTGTGAAGGCG
TTTCCGGATCAAGTTAAAGGGACAAGCCCCTCCCGAGGCCAAAATTGGGA
CAAGTAGCTTGAATGTACAAAGCGCCGCCGAAATCCGATTGCGCGGCAGC
GAAAGGAAAATTTTGCTCCTATTTTACCAGCGTCATTCCATCATTAACGA
TCTG

Coding sequence (CDS) from alignment at CM002457.1:692531..696484+

>rna1460 ID=rna1460|Name=rna1460|organism=Nannochloropsis gaditana|type=CDS|length=3234bp|location=Sequence derived from alignment at CM002457.1:692531..696484+ (Nannochloropsis gaditana)
ATGGCTCGTCGATTGCTCCCGCAGGCAACCACGTCGGTGATGTCCCGGCT
GCCGACCTACGCGTTGATGACGtgcctgctcttcctccacaggTCAGGTG
CTCAAGTAACATGGCGCCGAGGCGCGCAGTGCGGCAGCTTCATCTTTCTC
AGAAATCATCACGTAAAGTATAGGGCCGTTAGCTTTGATTTATCTACGAC
AAGGCTGAGGCAGAATCTGCATTCAGCAAAAAAACAGCTGGACGatccct
ccgacccctcAAACATCTATCGTGATACGGTAACCCTTCCGAAGAGCACA
TTCGACCAACGTGCGAACGCAGTCGTACGTGAGCCTCAAATACACCAATT
CTGGGAAACCGAGGGTATTTATAGGAAGTTGCATGAGGGtagcaggaaga
agggggcaccCAAATTTGTGCTGCACGATGGTCCCCCATACGCGAACGGA
GACTTACACATCGGCCACGCCCTAAACAAAATCCTTAAAGATTTCATCAA
TCGGTATAAAGTATTGCAGGGCTTTGAAGTACGTTATGTCCCAGGATGGG
ACTGTCACGGCCTGCCAATCGAGCTCAAGGTGCTTCAGAGTCTGAAGCAG
GCAGACCGTCAGGCCTTGACGCCCATCTCATTGCGCCTCAAAGCTCGAGA
CTTCGCCCTGGAGACCGTGGAGCGTCAACGTGCCTCTTTCAAGCGATATG
GAATTATGGGTGACTGGCAGCAGCCTTACCTTACATTGCAGCCCGAGTAC
GAGGCGGCGCAGATCCGAGCCTTCGGGGACATGGTGCTGAAAGGCCACAT
CTATCGCGGCCTCAAGCCCGTGCACTGGAGTCCTTCGTCCCGAACAGCTT
TGGCTGAAGCGGAACTTGAATATCCAGAGGACCATGTATCCAAATCAATC
TATGTTGGCTTTCCTGTTACATCCCTGGAAGGCTGCCCGGGTGCGGCCGC
CTTGTCTACCGCGCACCCTGCGGGTGCGCAGGCCCTGCGTGTGGCCGTCT
GGACGACCACCCCTTGGACCATCCCTGCAAATCTGGCTGTAGCAGTAAAT
ACTGAAATCGATTACTCCTTAGTCACTCACTCTGACATGCCGGGAGAGGC
TTACTTGGTGGCCACAGATTTGGTAGATAAACTGGCTGAAACCGTCTTTA
AAGTCTCAAAGGGCGGCTTGGAGCGGCTCGCCACATTGAAGGGTCGTGAT
TTAGTTGGGCTCAGGTATCGGCACCCTTTGATTGATCGAGAGTCGCAGAT
TGTGGAAGGCGGGGATTACATTACAACCGAGACCGGCACAGGTCTGGTGC
ACACCGCCCCAGGGCACGGCCAGGAAGATTATCTAACTGGTATTAAGTAC
GGGCTTCCCCTCTTAAGTCCCGTAGATGACGCGGGCCGCTTTACTGAAGA
AGCTGGAGAGCGCTTTGAAGGCAAAGATGTTCTTGGTGACGGGAATCTTG
AGGTAATTCAGGCGTTGAATGAGACAGGGGCCTTGATTTTGATGGAGCCC
TACCACCACAAATATCCCTACGACTGGAGGACCAAGAAGCCTACCATATT
CCGAGCTACTGATCAGTGGTTTGCATCGGTCGACTCCTTCCGGCAGGATG
CCCTGGCAGCCATCGATACTGTCACCTGGCTACCTGATGTTGGCAAAAAG
CGCATCTCTACCATGACCGCGTCCCGGTCTGACTGGTGCATCTCACGACA
ACGCTCCTGGGGCGTGCCCATCCCCGTGTTTTATCATGTGGACGATGGGT
CAATTCTAATGGACGATAAGACCATTTCTCATCTGGAAGGGGTTTTCCGG
GAGCATGGATCAGATGCCTGGTGGACAATGGAGGTGGCAGATCTGCTTCC
CATCGAGTACCGTGAGCGGGCATCGCTTTATCTGAGAGGCACCGACACTA
TGGACGTGTGGTTTGACAGTGGCTCCTCTTGGGCTGGCGTGCTCAAGAAC
AGGAAAGACGACTTGCAGTTCCCCGCGGACGTCTACTTGGAGGGGGTGGA
CCAACACCGGGGATGGTTCCAGTCGTCGCTCTTGACCAGCGTGGCGGCGA
CGGGTATGGCACCCTACAAGGCTGTAGTGACCCATGGCTTCGTCTTAGAC
GAAAAGGGCTATAAAATGAGTAAGAGCCTTGGTAACGTGGTCGACCCGAT
AAAAGTAATCGAGGGTGGCAACAATAAGAAGCAAGACCCGGCCTACGGTG
CGGACGTCTTGAGACTCTGGGTGTCCTCGGTCGACTACTCCAGCGATGTC
TGCGTGGGAGGCAACATACTGAAGCAGGTTGGCGATGCGTATCGAAAGCT
TCGTAACACAGCACGGTACTTGGTCGGCAATTTGCACGACTTTGATCCCG
ATCGAGATGCTGTCCCCTATGACTCTTTGCCACGCTTAGACAAGTACATT
CTAGGTCGCCTATCGATGATGATTCAAGAGGTGGAAGATGCCTTCGAGAC
TTTCCAATTTAGCCGAGCGAATCAGGCTTTGCAACGCTTTGCCGTTGCGG
ATCTCTCAAACTTCTACCTAGACGTGGCCAAGGACAGACTCTACATTGCA
GCTTCGAACGATGAGCGCCGTCGCACTTGCCAAACGACGATGAGACTCCT
GTTGGAGGGAATGGCGACGGCCATGAGCCCGGTTCTACCTCACATGGCTG
AAGACATATGGCAGAACCTTCCATATGCTCGACCCACCACCAGTATTTTT
CAGGCAGGCTGGATCCCCGAGCAGCGCAGATTTCCATCCTACGAAAATGA
GGAGTGGTCGGCAGTTTTGCGATTGCGGGACGACGTGAACAAGTGCATGG
AGGCAGCGCGACGGGAGGGACTAATCGGTGCTTCTTTGGAGGCCGCCGTT
TACGTCTATGCGCATGATCCGGAGCTCTGTAAAATACTGGATGGTCTCAT
GGGGGATAACAGTCTGAAGTACCCACCAACTCGAAGCAACGGAGTTGATG
ACCTGCGTTTCTTACTTCTTGCATCTCAGGTACATATTGTCAGCACTGCG
GCAGAAGTAACGAGCAAATGCGAAATTGTCTTAAATAAGGGAGGCGATGC
TGCCAGCGGAGCTACGGTCGGCATTAGGCGTGCGTCCGGCAAAAAATGTA
GCCGGTGCTGGTATTATGGCGATCTCTCCCCGGCAGACGCTACTTTTCCT
CACATTTGCTCGCGATGTGTCCATGCAGTAACCGCGCGCGGTGGCTTGAA
GTTGCAACAGCCGATCGTAAGCATTTCGAAATGA

Synonyms

Publications