rna1456, rna1456 (mRNA) Nannochloropsis gaditana

Overview
Namerna1456
Unique Namerna1456
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1249
Alignment locationCM002457.1:678412..681118 -

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Properties
Property NameValue
Productamidase
Orig transcript idgnl|cribi|Naga_100007g125.6439.mrna
Orig protein idgnl|cribi|Naga_100007g125.6439
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:678412..681118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g125gene1406Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29112.1cds1453Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1456rna1456-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1456 ID=rna1456|Name=rna1456|organism=Nannochloropsis gaditana|type=mRNA|length=1249bp
CGACAAGACCGGACGACCACGAGCTTGTTCGCACCTCTCAAAATGGCACA
GGACCCATTTTTTGCAGCTCGAGAGGAGCTGCGCAACCGGGTAGATTACA
TACAGACTCAACATGAGAACTTTCTCCGACTTCTACAAACAACCAACACG
GCTCCGGACTTATCCTGTAGAGATCTTCGAGACTCGCTGTGCCGAGAAAT
TGAAGCTGCGGAAAATCAGTGCCGTGAATTGGAGAAAGTGGTGGCAGTCG
TCGAGAAAAATCGCCAGCGCTTCCGCCATATCGATAATCACGAAATTGGG
CAGCGCAGGGCTTTTGTCACCAAAATGAAGCAATCACTCGTCAAAATCTG
GAATAACTTAGAAAGCGATTACGTGAAGAACAAGATGAGCGGCGACCGGA
GGGATGTGAGTATGTCTGTGTGGGCTTACCTACAACGAATTGCGAAGACG
GGGAAAACCTTACTACTTTCGCGCATTACCTCCAGCCCAGTCGGCCATTC
GATGAAGGCGCGGAGGGTCACAGGACTGGAAGGAGCGGTAAGCGGGCGAA
CGACTACATTGAGGAGCAGCGCTCGAGGCAACACTTGATGCTTCGTGAGC
AGGATGAAGGGCTGGAGGAGCTAGGCACAGCTGTCGACAGGGTGGGACGT
ATGGCGGATGCAATGAACCAGGAGCTGAACGCGCAAAATCGAATGTTGGG
CGATTTGGAGGTGGAAGTGGAAAATACGAACGAGCAAATGAGTTTCGTTA
TGGGTAAACTAAGCAAGCTCCTGAAAACCAAAGACAAATATCAGTTGTGG
CTCATTATCGTTTTGACCGTGGTGCTGATCGTCCTGATTCTCCTGACCAT
CTATGTGTAAGGGCGCCTCTCCGCCCCCTGCTGGGCCACCAGCTGGTCAT
GTGTGGGGCAGCGCTTCTCGTAAGCTTGGAAGACATAGGAAGTCAAGGGG
TATACACCGTCATGATGATCGGGTGCATGTCACCGCTCCACGCACTTTCA
TCGATGGTCAAGTTCAGAAATGGACATGATTGTACAGGGAGGGTTGAATA
TGCACTCGAGAAGAGGCATTACCCTTCATGGCTACTTCAGCATGTAATAA
GGCATATTGCGTGTGTTGTGCATGCAACTTCTATCGATCGCTGTAATTTT
CTTTTTTTTTTTAAATAAGATGTTGCACTGACGAACACAACGAAAGCGGC
TTGTTGATTTTAGCAATTCGCTGCGATCGGCGGCAAGGGTGTAGGTTTG
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protein sequence of rna1456

>rna1456-protein ID=rna1456-protein|Name=rna1456|organism=Nannochloropsis gaditana|type=polypeptide|length=335bp
MALGTDQGGSIRLPASWCGCVGLKPTFGLVPYTGVCSHEFTLDHAGPMAR
TVLDTALLLEAIAGLDPVRRDARQPLDMAPVPQYSGLATGEVSGMRIGLL
LEGLENCEDDVRHHTMAAADMLRGAGARVEEVSIPLHRDSAAIWLPLCLE
GGHATRMQGERGFRGYYPVSLQQAYFRGFHLQAAELSFTNKYYILFGEYV
QKAYGAQYYQKCQNLVPALTQAYDELLANPSSGGAMDALLLPTTTTKPQL
LPRADMTAAECITNAWSGLQNTAAFDLTGHPALSINAGFSEGPVQLPVGV
QIVGRRWGDATVLNVARAIEMCRKPTPLPPIAANC
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mRNA from alignment at CM002457.1:678412..681118-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1456 ID=rna1456|Name=rna1456|organism=Nannochloropsis gaditana|type=mRNA|length=2707bp|location=Sequence derived from alignment at CM002457.1:678412..681118- (Nannochloropsis gaditana)
CTCTCTTTTTTCGCAGTCAATTGGATCTCAGTCCGCATTTTCATTCTTTC
CCAATATTATCCGACTCTCAAGCGGTCCTCACACGTCTGCACGAGGTTGC
ACATCCTTTGCATCGGCTCCAAAAAGACTTTTCCCTGTTGCATCCACGTC
TAACCTCCCGACTTCATGCTGTCTTACCCAAGGAAGATCATCACGACAAG
TTATAGACAAGGAGTGTGTATTCGTCCTGTGAAGTTCCAGATAAATGTGC
GACATAAGGTCTCGCCACTTCTTTGCTCGGCGTCACCCGGCTTGTCTTTG
ACCTGGATGCCTTGCCGACCTTCAAGTACAAGGAAACCTGCGTTCAAAGC
CCCAGCAATTCGCGTACCCACTATCGACCGTTTGAAAAGCATTGCAGCAG
ACTGGAATCTACAAATAGAGGAAAAGGATATCCATGATCTACGAGGGTGT
ATGGGTAGTGCTGTTGATTCTTACCGGCGCATTGACGAGCTTACGAACTC
GAGTACATCGTCTCCTTTCGCCCCGGTTGCAAAGTTCCCCCGTATCCCAG
GCGGTGTTCGACCTGAAGCCAAAGACAATTTTTGCAACGCTTGGTTTATA
AAAACAAACATCGAAAACGCTTACCAAGCCAATAATACTCATGGCGAATC
CAAAGCGAAGTGTATCCAGTCTTCCTTTCAAATACTGAAGGGACGGACGA
TTGCATGTAAGGACACTATCGCGGTTGCCGGAGTCCCCATGATGAATGGT
TCCCGCATGTTGGAGGGCTACACACCTGAAATCGAAGCGACAATCGTCAC
GCGCGTACTTGAGGCGGGGGGGATTATTACGGGCAAAGCTGTGGCTGAAG
ACCTATGTTGCTCGGGGAGTTCGTTTGCCACGGCGCATGGGCCCGTGCGC
AACCCGTGGAACGAGGAGTTCTCGGCCGGGGGATCAAGCTCAGGGTGTGG
GGCACTGGTAAGAAAGACACTTCACGCATCTTTAAAAGGTTATGGAAACT
AAATCATCGTTTCTTTTCTGCCCAATAAGAACGCGCAGTAGTTGAATGAA
TGTTAGTTATAAGCTTGACGCAGGCAGAAGTATTTCTCACGCTAACTCTC
ATCTTCTCATATTCGCTTAGGTTGGGGGAGGCATAGTAGATATGGCGCTT
GGGACGGATCAAGGCGGATCTATCCGCCTCCCGGCCTCGTGGTGCGGGTG
CGTGGGCTTGAAACCGACCTTTGGCCTGGTGCCCTACACAGGAGTTTGCT
CTCACGAGTTCACGCTCGACCACGCAGGGCCCATGGCCCGCACTGTGCTC
GATACAGCCCTTCTTCTAGAGGCCATTGCCGGACTGGACCCCGTACGGCG
CGACGCACGCCAGCCGCTGGACATGGCGCCCGTGCCCCAGTACTCGGGCC
TTGCTACGGGAGAGGTGTCAGGCATGCGCATTGGCCTGCTCCTGGAGGGC
CTCGAAAATTGCGAAGACGATGTACGGCATCACACCATGGCGGCGGCGGA
CATGTTACGAGGCGCTGGTGCTCGCGTCGAGGAAGTCTCGATTCCACTGC
ACCGGGACTCCGCCGCGATCTGGCTTCCCCTGTGCCTGGAGGGCGGCCAC
GCCACACGCATGCAGGGTGAGCGGGGTTTCCGTGGCTACTATCCTGTGTC
ACTCCAGCAGGCCTACTTTCGCGGCTTCCACCTGCAGGCTGCTGAGTTGA
GCTTCACTAACAAATACTATATTCTGTTCGGGGAGTACGTGCAAAAGGCT
TACGGCGCACAGTACTACCAGAAATGCCAAAACCTTGTGCCGGCCCTCAC
GCAGGCTTACGACGAGCTCCTGGCAAACCCATCAAGCGGCGGTGCGATGG
ATGCTTTGCTCTTACCAACAACGACGACCAAACCACAGCTTTTGCCGCGG
GCCGATATGACGGCTGCCGAGTGCATTACAAATGCCTGGTCAGGCTTACA
GAACACGGCGGCTTTTGACCTCACGGGCCACCCGGCTCTGAGCATCAATG
CTGGCTTCTCCGAGGGGCCGGTGCAGTTGCCTGTTGGCGTACAAATTGTC
GGCCGGCGCTGGGGCGATGCCACTGTGCTCAATGTGGCACGGGCCATCGA
AATGTGTCGCAAACCTACACCCTTGCCGCCGATCGCAGCGAATTGCTAAA
ATCAACAAGCCGCTTTCGTTGTGTTCGTCAGTGCAACATCTTATTTAAAA
AAAAAAAGAAAATTACAGCGATCGATAGAAGTTGCATGCACAACACACGC
AATATGCCTTATTACATGCTGAAGTAGCCATGAAGGGTAATGCCTCTTCT
CGAGTGCATATTCAACCCTCCCTGTACAATCATGTCCATTTCTGAACTTG
ACCATCGATGAAAGTGCGTGGAGCGGTGACATGCACCCGATCATCATGAC
GGTGTATACCCCTTGACTTCCTATGTCTTCCAAGCTTACGAGAAGCGCTG
CCCCACACATGACCAGCTGGTGGCCCAGCAGGGGGCGGAGAGGCGCCCTT
ACACATAGATGGTCAGGAGAATCAGGACGATCAGCACCACGGTCAAAACG
ATAATGAGCCACAACTGATATTTGTCTATAGTGGCCAGAAGAGAGACCAA
AAAGGATGAGTAGGGTCGGGAGAGGGGGTTAGGATATTCAGAAAGAATAT
CTACTGCTATGACCACAGAGACCTGAAAAATTTGCCCGCCGTCGTCCGCT
TTATGGG
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Coding sequence (CDS) from alignment at CM002457.1:678412..681118-

>rna1456 ID=rna1456|Name=rna1456|organism=Nannochloropsis gaditana|type=CDS|length=1008bp|location=Sequence derived from alignment at CM002457.1:678412..681118- (Nannochloropsis gaditana)
ATGGCGCTTGGGACGGATCAAGGCGGATCTATCCGCCTCCCGGCCTCGTG
GTGCGGGTGCGTGGGCTTGAAACCGACCTTTGGCCTGGTGCCCTACACAG
GAGTTTGCTCTCACGAGTTCACGCTCGACCACGCAGGGCCCATGGCCCGC
ACTGTGCTCGATACAGCCCTTCTTCTAGAGGCCATTGCCGGACTGGACCC
CGTACGGCGCGACGCACGCCAGCCGCTGGACATGGCGCCCGTGCCCCAGT
ACTCGGGCCTTGCTACGGGAGAGGTGTCAGGCATGCGCATTGGCCTGCTC
CTGGAGGGCCTCGAAAATTGCGAAGACGATGTACGGCATCACACCATGGC
GGCGGCGGACATGTTACGAGGCGCTGGTGCTCGCGTCGAGGAAGTCTCGA
TTCCACTGCACCGGGACTCCGCCGCGATCTGGCTTCCCCTGTGCCTGGAG
GGCGGCCACGCCACACGCATGCAGGGTGAGCGGGGTTTCCGTGGCTACTA
TCCTGTGTCACTCCAGCAGGCCTACTTTCGCGGCTTCCACCTGCAGGCTG
CTGAGTTGAGCTTCACTAACAAATACTATATTCTGTTCGGGGAGTACGTG
CAAAAGGCTTACGGCGCACAGTACTACCAGAAATGCCAAAACCTTGTGCC
GGCCCTCACGCAGGCTTACGACGAGCTCCTGGCAAACCCATCAAGCGGCG
GTGCGATGGATGCTTTGCTCTTACCAACAACGACGACCAAACCACAGCTT
TTGCCGCGGGCCGATATGACGGCTGCCGAGTGCATTACAAATGCCTGGTC
AGGCTTACAGAACACGGCGGCTTTTGACCTCACGGGCCACCCGGCTCTGA
GCATCAATGCTGGCTTCTCCGAGGGGCCGGTGCAGTTGCCTGTTGGCGTA
CAAATTGTCGGCCGGCGCTGGGGCGATGCCACTGTGCTCAATGTGGCACG
GGCCATCGAAATGTGTCGCAAACCTACACCCTTGCCGCCGATCGCAGCGA
ATTGCTAA
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Synonyms
Publications