rna1445, rna1445 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1445
Unique Name	rna1445
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1316
Alignment location	CM002457.1:650241..651960 -

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Properties


Property Name	Value
Product	electron transfer flavoprotein
Orig transcript id	gnl\|cribi\|Naga_100203g10.2711.mrna
Orig protein id	gnl\|cribi\|Naga_100203g10.2711
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:650241..651960 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100203g10	gene1395	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1445	rna1445-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29227.1	cds1442	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:650241..651960-
coding sequence from alignment at CM002457.1:650241..651960-

mRNA sequence

>rna1445 ID=rna1445|Name=rna1445|organism=Nannochloropsis gaditana|type=mRNA|length=1316bp
TGCTCCTATCAGGTGGGCAGCGTTTTCAAAATTGATGAAAGTGACCGTGG
ATGCTGACTGGTCCCGACTTACGTTCGATCACCGCGGTCCTGACGCGGGC
GTCGTTCCGCCTAACACTCTCGACATTTTGCCGCACCGCACCCATACCTA
AGACACAGAAAAGTCCTGCAACTTGCACCAGCGTCTACCTGCAATCTCCA
CCATGCTCAAGGTCAAGCTGCGGCATCTGAATCTTTTGGAAGGGGAGCTA
AATGCTGCGTCTGAAGATGCGCTGCGGGTGAGAACCGGTATCCGTATTGA
CGTCTTGCGTGACTTTCCGTAAGCCGACAAAGAAGTACCCCTTCACCACT
CAATGAGCAGATTGCGATTCCCATTCGCAGCGAGGGACCTCACGAGGACC
GCGCTGTTCTTAGGCCTTCTGATTGCAAAGAAGGGCAAAATACAGAACAG
CGCTGGCTCGGCCGCATGGTAACCAACACTTTGGGGGAGATTCGCAAGCG
TGCCGACCTCTGCGACAGCAAAGGGGCCATGCTCAAAGTGGACATAGAAA
ATGAAGCGACCGAAGTCGACAAGCTTCTGCAGTCGAAGAAGCGCAAGCTG
GCGGAGATAGCAGAACTGAAAAGTCGCGTCTCGGTGATGCGCAGAAAGGT
GCTGGACCTGACGTCCTCTCGGTGCGCGAGCTGGTGCAAGGCGCTTAGGC
CGGCGGAGGCAGCGGCAGCCGAGGCAGGGGCGGAAAGGCGCGCGGCGGCG
CAAGCGGTGGAATCTCTCAGGGGCCGGGACGTCTTGGCAGAGATATCGCC
GCTGCAAGAGAAGGCGAGGCAATGCGTGGAGGAGCTTGCGGGCGGCTCTG
AGCTTCTCGCCCGGCGCGTAGAAAGCTTGGGTCAGACTAGCACGGCCGTG
ACCTCCCTCCTGAAGTCCAAGCCGTCGCGAGTTGACAAAGCCATCCGTCA
GGGGCCGCGCGACGGACTGGAATCAAGGAAAAGCGCGCGCAAGAGACCAG
GGGCTGGCGGGTATGAGAATAACCCCGCCAACCGAGAAGCAAGGGCTCCG
GCGGATGAGGAGACCGCGACGCCCGCCCTCATGTCAGGCATCTCTTTGTT
GTCAGCGCACTTGAGACGGGATTGAAGCGTGTCCGCATTGACCCGGTAAA
ATGTGTATATGTAAGCTGCATTCCTGCCAAGGAGCGTTTCAAAGTGCGTT
TCATATTCAAAACTCAGCATTAGATTTCCGTGTCGGGCTGACAACATAAG
GCTCGCAGCGCTCCAGACTGTACACTCGAGAAAGGATGTCACGGAAAGAA
AATTTGCTTCCTTGTT

protein sequence of rna1445

>rna1445-protein ID=rna1445-protein|Name=rna1445|organism=Nannochloropsis gaditana|type=polypeptide|length=409bp
MGAAERRTRNSHTHEYAWTHFLVFTGTHFLANEYRVQAPGDEIASYPVCP
SQPVGRPVDLTHLNTMLRRPLLTVSAQPRRFVGVLMSRFGTRDASTLVVA
EHSESKGTLSPSTLCTITAAGQLQNPVTVLVAGGKGVNAVAQQAAQVPGV
SKVLVAEHAAYEKGIAENLSQAVVATHKAGDYSHILAPSSMRSKNYVPRV
AALLDSQPITDVIAIKDQATFVRPMYAGNAIATVTTSEPLKILTVRTTAF
EKAPSTGGSAATEVAPAVAKPEAGLSAFLSESVSQSARPELSSARVVISG
GRGLKTKEHFQMLEALADKLKGAVGASRAAVDEFHMPNELQVGQTGKVVA
PDLYLAVGISGAIQHLSGMKDSKVIVAINKDKEAPIFQVADYGLVADLFQ
AVPELTDKV

mRNA from alignment at CM002457.1:650241..651960-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1445 ID=rna1445|Name=rna1445|organism=Nannochloropsis gaditana|type=mRNA|length=1720bp|location=Sequence derived from alignment at CM002457.1:650241..651960- (Nannochloropsis gaditana)
ATGGGCGCCGCCGAGAGACGCACTCGGAATTCGCACACACATGAATACGC
GTGGACTCACTTTTTGGTCTTTACCGGCACGCATTTTTTGGCAAACGAGT
ACAGGGTTCAGGCCCCCGGAGACGAAATCGCTTCCTATCCTGTCTGCCCG
TCTCAACCTGTGGGGCGACCCGTCGATCTTACTCACCTCAACACTATGCT
GCGACGGCCTCTCCTGACTGTCTCGGCTCAGCCACGACGCTTTGTGGGGG
TACTAATGTCCAGATTTGGCACGCGCGATGCCTCAACGTTGGTGGTGGCC
GAACACTCCGAGTCCAAGGGGACTCTGAGCCCCAGCACGCTGTGCACCAT
CACGGCCGCGGGTCAACTGCAGAATCCTGTGACGGTCCTGGTAGCTGGGG
GGAAGGGCGTCAACGCAGTGGCTCAGCAGGCTGCCCAGGTTCCAGGTGTC
AGCAAGGTCCTTGTGGCGGAGCACGCTGCCTACGAAAAGGGGATAGCCGA
GAATCTCAGCCAGGCGGTCGTGGCCACACACAAAGCTGGTGATTATTCGC
ATATTTTAGCTCCTTCCTCCATGCGCTCCAAGAATTACGTCCCCAGGGTA
GCAGCCTTACTGGATTCGCAGCCTATCACCGACGTGATCGCTATCAAGGA
CCAGGCTACCTTCGTGCGCCCCATGTACGCGGGAAACGCCATCGCCACCG
TGACCACATCCGAGCCTCTGAAGATCCTTACAGTGCGCACCACCGCTTTT
GAGAAGGCACCCTCCACAGGCGGAAGCGCGGCTACGGAGGTAGCACCGGC
GGTGGCGAAGCCGGAGGCAGGCTTGAGTGCCTTCCTGAGTGAGAGCGTCA
GTCAGTCGGCTCGCCCGGAGCTGTCTTCGGCCAGGGTGGTGATCTCAGGT
GGACGCGGGCTCAAGACCAAAGAGCACTTTCAGATGTTGGAGGCGCTCGC
TGACAAGCTAAAGGGTGCAGGTATACGTCGGGGTGGGGGGTCTGGCATGG
CGGTGCCGGGTTGGATCGGAGGGGCGGGGGCCGGTCTGTCCTTCCAGTGC
TTGCTCTCCTCGTCGGGGGGTTGGATTTTTGTGGTGACCACGATTCTCAT
ATCATTGCCACTCACGACACAGTGGGCGCCTCTCGCGCGGCCGTGGACGA
GTTTCACATGCCCAACGAGCTCCAGGTAGGTCAGACCGGGAAGGTGGTAG
CGCCGGACCTCTACTTGGCTGTGGGCATCTCGGGCGCCATCCAGCATCTC
TCAGGCATGAAGGACAGCAAGGTGATCGTGGCCATCAACAAGGACAAGGA
GGCGCCCATCTTCCAAGTGGCCGACTACGGGCTTGTCGCGGACCTCTTCC
AGGCGGTCCCGGAGCTCACTGACAAGGTTTGAGTTGCGAGAAATACTGGG
TGAGGGGACGGGGACGTCGGGCCGTCTGGATGCGCTCGCAGAGGCTTGCG
AGCTTCCTTGCGTGCAGACTGGCACAGACATGTGCAGAAGCAGGTCTCCT
TAATGATGGGAAGAGTGGTATGTGAAAATATTCGAGCTTAGTAGCTGTGT
ATGGAATACAAAAAAAAACAAAGGCCAACAAGGAAGCAAATTTTCTTTCC
GTGACATCCTTTCTCGAGTGTACAGTCTGGAGCGCTGCGAGCCTTATGTT
GTCAGCCCGACACGGAAATCTAATGCTGAGTTTTGAATATGAAACGCACT
TTGAAACGCTCCTTGGCAGG

Coding sequence (CDS) from alignment at CM002457.1:650241..651960-

>rna1445 ID=rna1445|Name=rna1445|organism=Nannochloropsis gaditana|type=CDS|length=2460bp|location=Sequence derived from alignment at CM002457.1:650241..651960- (Nannochloropsis gaditana)
TGGGCGCCTCTCGCGCGGCCGTGGACGAGTTTCACATGCCCAACGAGCTC
CAGGTAGGTCAGACCGGGAAGGTGGTAGCGCCGGACCTCTACTTGGCTGT
GGGCATCTCGGGCGCCATCCAGCATCTCTCAGGCATGAAGGACAGCAAGG
TGATCGTGGCCATCAACAAGGACAAGGAGGCGCCCATCTTCCAAGTGGCC
GACTACGGGCTTGTCGCGGACCTCTTCCAGGCGGTCCCGGAGCTCACTGA
CAAGGTTTGAATGGGCGCCGCCGAGAGACGCACTCGGAATTCGCACACAC
ATGAATACGCGTGGACTCACTTTTTGGTCTTTACCGGCACGCATTTTTTG
GCAAACGAGTACAGGGTTCAGGCCCCCGGAGACGAAATCGCTTCCTATCC
TGTCTGCCCGTCTCAACCTGTGGGGCGACCCGTCGATCTTACTCACCTCA
ACACTATGCTGCGACGGCCTCTCCTGACTGTCTCGGCTCAGCCACGACGC
TTTGTGGGGGTACTAATGTCCAGATTTGGCACGCGCGATGCCTCAACGTT
GGTGGTGGCCGAACACTCCGAGTCCAAGGGGACTCTGAGCCCCAGCACGC
TGTGCACCATCACGGCCGCGGGTCAACTGCAGAATCCTGTGACGGTCCTG
GTAGCTGGGGGGAAGGGCGTCAACGCAGTGGCTCAGCAGGCTGCCCAGGT
TCCAGGTGTCAGCAAGGTCCTTGTGGCGGAGCACGCTGCCTACGAAAAGG
GGATAGCCGAGAATCTCAGCCAGGCGGTCGTGGCCACACACAAAGCTGGT
GATTATTCGCATATTTTAGCTCCTTCCTCCATGCGCTCCAAGAATTACGT
CCCCAGGGTAGCAGCCTTACTGGATTCGCAGCCTATCACCGACGTGATCG
CTATCAAGGACCAGGCTACCTTCGTGCGCCCCATGTACGCGGGAAACGCC
ATCGCCACCGTGACCACATCCGAGCCTCTGAAGATCCTTACAGTGCGCAC
CACCGCTTTTGAGAAGGCACCCTCCACAGGCGGAAGCGCGGCTACGGAGG
TAGCACCGGCGGTGGCGAAGCCGGAGGCAGGCTTGAGTGCCTTCCTGAGT
GAGAGCGTCAGTCAGTCGGCTCGCCCGGAGCTGTCTTCGGCCAGGGTGGT
GATCTCAGGTGGACGCGGGCTCAAGACCAAAGAGCACTTTCAGATGTTGG
AGGCGCTCGCTGACAAGCTAAAGGGTGCAGTGGGCGCCTCTCGCGCGGCC
GTGGACGAGTTTCACATGCCCAACGAGCTCCAGGTAGGTCAGACCGGGAA
GGTGGTAGCGCCGGACCTCTACTTGGCTGTGGGCATCTCGGGCGCCATCC
AGCATCTCTCAGGCATGAAGGACAGCAAGGTGATCGTGGCCATCAACAAG
GACAAGGAGGCGCCCATCTTCCAAGTGGCCGACTACGGGCTTGTCGCGGA
CCTCTTCCAGGCGGTCCCGGAGCTCACTGACAAGGTTTGAATGGGCGCCG
CCGAGAGACGCACTCGGAATTCGCACACACATGAATACGCGTGGACTCAC
TTTTTGGTCTTTACCGGCACGCATTTTTTGGCAAACGAGTACAGGGTTCA
GGCCCCCGGAGACGAAATCGCTTCCTATCCTGTCTGCCCGTCTCAACCTG
TGGGGCGACCCGTCGATCTTACTCACCTCAACACTATGCTGCGACGGCCT
CTCCTGACTGTCTCGGCTCAGCCACGACGCTTTGTGGGGGTACTAATGTC
CAGATTTGGCACGCGCGATGCCTCAACGTTGGTGGTGGCCGAACACTCCG
AGTCCAAGGGGACTCTGAGCCCCAGCACGCTGTGCACCATCACGGCCGCG
GGTCAACTGCAGAATCCTGTGACGGTCCTGGTAGCTGGGGGGAAGGGCGT
CAACGCAGTGGCTCAGCAGGCTGCCCAGGTTCCAGGTGTCAGCAAGGTCC
TTGTGGCGGAGCACGCTGCCTACGAAAAGGGGATAGCCGAGAATCTCAGC
CAGGCGGTCGTGGCCACACACAAAGCTGGTGATTATTCGCATATTTTAGC
TCCTTCCTCCATGCGCTCCAAGAATTACGTCCCCAGGGTAGCAGCCTTAC
TGGATTCGCAGCCTATCACCGACGTGATCGCTATCAAGGACCAGGCTACC
TTCGTGCGCCCCATGTACGCGGGAAACGCCATCGCCACCGTGACCACATC
CGAGCCTCTGAAGATCCTTACAGTGCGCACCACCGCTTTTGAGAAGGCAC
CCTCCACAGGCGGAAGCGCGGCTACGGAGGTAGCACCGGCGGTGGCGAAG
CCGGAGGCAGGCTTGAGTGCCTTCCTGAGTGAGAGCGTCAGTCAGTCGGC
TCGCCCGGAGCTGTCTTCGGCCAGGGTGGTGATCTCAGGTGGACGCGGGC
TCAAGACCAAAGAGCACTTTCAGATGTTGGAGGCGCTCGCTGACAAGCTA
AAGGGTGCAG

Synonyms

Publications