rna1444, rna1444 (mRNA) Nannochloropsis gaditana

Overview
Namerna1444
Unique Namerna1444
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1871
Alignment locationCM002457.1:648775..650384 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100203g11.2709.mrna
Orig protein idgnl|cribi|Naga_100203g11.2709
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:648775..650384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100203g11gene1394Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1444rna1444-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29225.1cds1441Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1444 ID=rna1444|Name=rna1444|organism=Nannochloropsis gaditana|type=mRNA|length=1871bp
AATCCATTCGAACACTCCCTTAGGACATTAGCACCGCCTGTGTGGATACC
AACTTGATGCAATATAGTGTGCACTGAACTGCATTTCTATCTCGCGCGAT
CCTCTTCGAATTTGAGCTTATCCACACCCTTTGTCTCGCCCTCGGACGGC
CTTGCGCCCTGTCTCGTATTTTAATCCATTCGAACACTCCCTTAGGACAT
TAGCACCGCCTGTGTGGATACCAACTTGATGCAATATAGTGTGCACTGAA
CTGCATTTCTATCTCGCGCGATCCTCTTCGAATTTGAGCTTATCCACACC
CTTTGTCTCGCCCTCGGACGGCCTTGCGCCCTGTCTCATATTTTAATCCA
TTCGAACACTCCCTTAGGACATTAGCACGGCCTGTGTGGCGGTGGCCGGG
CCGGTATCACACAATGAAGTGAAGATGACTAATCGGGGTCGGTGGATCAT
CAACGGGGATAGGCTGGCCAAGGAAGTCGGCTTAAAGCGCGTGGTGCTTA
TTAACGATTTCGTCGCCCAGGGCTACGGGCTGCTGACCGTAGACCGCACC
GACACCAAGGAAGTCCACGTCCTGCAAGACGCCTCGCCCGAGCCCGGCGC
CCCCATCGCGACCATTGGCGCGGGCACGGGTCTGGGCGAGTGCTTTTTGA
CGCCGGGAGAAGACGGCTACTACGTGGCCTATCCATCCGAGGGCGGACAT
GCGGAGTTTCCACCGCGCACTGAGACCGAGTTCCAACTTTTGGAGTTTTT
GAAGCGACGCTACGAGCAGAAGCATCGCGTGTCTGTCGAACGAGTGGTCA
GCGGCCCCGGCATTGCCAATGTGTATGATTTTCTTGCGGAGCACTACCCC
GACCAGGTGGATAAGAGCGTGGATGCAGCATTTCGCGCGGCCGGTGAAAT
GGGAGGCAAAATAGTGTCCGAGAACGCCAAGCCGGGCACGCTCGCGGGGC
TGGCGCTGGACATCTTCGCGGGAGCCTACGGGTCCGAGGCGGGAGTGGCC
GGCCTCAAGTGGATGCCCTTCGGGGGGCTCTTTATCACGGGTGGTCTAAC
CCCGAAGAATATCGATCGTATCGCGGGGGAAAACAGTTTGTTCATGGAGG
CATTCCGCGACAAGGGACGTGTCAGTCCTCTCCTGAGCAAGATTCCTATG
TACGCCGTGTTGGTGGAGGACTTGGGAGAACGTGGGGCTCATTGGATGGC
CATCAAGACGCTGCTGGAGCACCTGAACCACGGTAACGTCCTCAGGGGCG
TCTTCAAGGGCGCCGCCACCGGGTCCGCCAGCCGGGCTCACGACGGCATT
TCTTTCTGGCGCTCGCAAACAGCCGTCACTTTGGTAGGAGGAGTAGCGCT
AGCCTCCCTTTCTTTTTTGGCTGCCAAATTCTTCAGGAAATAGTCAGCTC
ACTTGCGCAATTTAGACGTCTGCTCCGTGGGGAAAGCTCAACGCAGGCAG
GACAGTCGAAGTAGGGGCTGAGATGGGGATTTGATGGAAACCCGTGCGCC
TCGCATTTGCTGGGAGAGGGAGGCGGGACTTGTGTGCCACATGGCCCCCA
GTAAACTATATTCGCTCCCTTTTGAGCATCTTTATCATGGATGAATGGCA
GAATGCTGAGCTCGATGTGGGCACAAGTCTTAAAAAGGGATGTTAACCTG
GTAAGGGAAAGTCGATCCGGCCCTTTGGCAGATATGGGGGGGAAAGGAGT
GGGACAGAGGAAGTGCTTGAGGGGAAGAGGTCTCGGAGAGCGGCGGGAGA
GAGAGCCTACACGTGTTTTGGGAGGGGGAATTTATGCATGTCTTATACGT
ATATTGGAGGCTGTTTCCGGGCACGGAACAGGCATGTCGGGGGGCAAATT
ATCATATATGCATCCAAAGCT
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protein sequence of rna1444

>rna1444-protein ID=rna1444-protein|Name=rna1444|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MVTNTLGEIRKRADLCDSKGAMLKVDIENEATEVDKLLQSKKRKLAEIAE
LKSRVSVMRRKVLDLTSSRCASWCKALRPAEAAAAEAGAERRAAAQAVES
LRGRDVLAEISPLQEKARQCVEELAGGSELLARRVESLGQTSTAVTSLLK
SKPSRVDKAIRQGPRDGLESRKSARKRPGAGGYENNPANREARAPADEET
ATPALMSGISLLSAHLRRD
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mRNA from alignment at CM002457.1:648775..650384+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1444 ID=rna1444|Name=rna1444|organism=Nannochloropsis gaditana|type=mRNA|length=1610bp|location=Sequence derived from alignment at CM002457.1:648775..650384+ (Nannochloropsis gaditana)
TGCTCCTATCAGGTGGGCAGCGTTTTCAAAATTGATGAAAGTGACCGTGG
ATGCTGACTGGTCCCGACTTACGTTCGATCACCGCGGTCCTGACGCGGGC
GTCGTTCCGCCTAACACTCTCGACATTTTGCCGCACCGCACCCATACCTA
AGACACAGAAAAGTCCTGCAACTTGCACCAGCGTCTACCTGCAATCTCCA
CCATGCTCAAGGTCAAGCTGCGGCATCTGAATCttttggaaggggagctA
AATGCTGCGTCTGAAGATGCGCTGCGGGTGAGAACCGGTATCCGTATTGA
CGTCTTGCGTGACTTTCCGTAAGCCGACAAAGAAGTACCCCTTCACCACT
CAATGAGCAGATTGCGATTCCCATTCGCAGCGAGGGACCTCACGAGGACC
GCGCTGTTCTTAGGCCTTCTGATTGCAAAGAAGGGCAAAATACAGAACAG
CGCTGGCTCGGTAAGTGTTCTGCTCAGGGGTGTGAACGATCAACGTTGCT
GTGGAATGCCCTGTGCTTCATCCGACGTATTGTTATCTAAAAGCTGTTCT
CACTCCATCGCTCTGAAAGGCCGCATGGTAACCAACACTTTGGGGGAGAT
TCGCAAGCGTGCCGACCTCTGCGACAGCAAAGGGGCCATGCTCAAAGTGG
ACATAGAAAATGAAGCGACCGAAGGTGAGAGAGGTCACCGTGCCTGCCTC
TCATGCTCAGGCCCCGCCTGTTGTGAATCAGTCGAAGCATCCGCTTAGTG
AGGATCCCCGTTGAAGTTCATAACTGCGGTGGCTCTCACGGGGTCACCTG
CTCGTCTATGATGTTGGACTCTGGCATCTTTGACTTTCTGACACCACACC
CAACAACAGTCGACAAGCTTCTGCAGTCGAAGAAGCGCAAGCTGGCGGAG
ATAGCAGAACTGAAAAGTCGCGTCTCGGTGATGCGCAGAAAGGTGCTGGA
CCTGACGTCCTCTCGGTGCGCGAGCTGGTGCAAGGCGCTTAGGCcggcgg
aggcagcggcagccgaggcaggggcggaaAGGCGCGCGGCGGCGCAAGCG
GTGGAATCTCTCAGGGGCCGGGACGTCTTGGCAGAGATATCGCCGCTGCa
agagaaggcgaggcaATGCGTGGAGGAGCTTGCGGGCGGCTCTGAGCTTC
TCGCCCGGCGCGTAGAAAGCTTGGGTCAGACTAGCACGGCCgtgacctcc
ctcctgaaGTCCAAGCCGTCGCGAGTTGACAAAGCCATCCGTCAGGGGCC
GCGCGACGGACTGGAATCAAGGAAAAGCGCGCGCAAGAGACCAGGGGCTG
GCGGGTATGAGAATAACCCCGCCAACCGAGAAGCAAGGGCTCCGGCGGAT
GAGGAGACCGCGACGCCCGCCCTCATGTCAGGCATCTCTTTGTTGTCAGC
GCACTTGAGACGGGATTGAAGCGTGTCCGCATTGACCCGGTAAAATGTGT
ATATGTAAGCTGCATTCCTGCCAAGGAGCGTTTCAAAGTGCGTTTCATAT
TCAAAACTCAGCATTAGATTTCCGTGTCGGGCTGACAACATAAGGCTCGC
AGCGCTCCAGACTGTACACTCGAGAAAGGATGTCACGGAAAGAAAATTTG
CTTCCTTGTT
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Coding sequence (CDS) from alignment at CM002457.1:648775..650384+

>rna1444 ID=rna1444|Name=rna1444|organism=Nannochloropsis gaditana|type=CDS|length=1320bp|location=Sequence derived from alignment at CM002457.1:648775..650384+ (Nannochloropsis gaditana)
ATGGTAACCAACACTTTGGGGGAGATTCGCAAGCGTGCCGACCTCTGCGA
CAGCAAAGGGGCCATGCTCAAAGTGGACATAGAAAATGAAGCGACCGAAG
TCGACAAGCTTCTGCAGTCGAAGAAGCGCAAGCTGGCGGAGATAGCAGAA
CTGAAAAGTCGCGTCTCGGTGATGCGCAGAAAGGTGCTGGACCTGACGTC
CTCTCGGTGCGCGAGCTGGTGCAAGGCGCTTAGGCcggcggaggcagcgg
cagccgaggcaggggcggaaAGGCGCGCGGCGGCGCAAGCGGTGGAATCT
CTCAGGGGCCGGGACGTCTTGGCAGAGATATCGCCGCTGCaagagaaggc
gaggcaATGCGTGGAGGAGCTTGCGGGCGGCTCTGAGCTTCTCGCCCGGC
GCGTAGAAAGCTTGGGTCAGACTAGCACGGCCgtgacctccctcctgaaG
TCCAAGCCGTCGCGAGTTGACAAAGCCATCCGTCAGGGGCCGCGCGACGG
ACTGGAATCAAGGAAAAGCGCGCGCAAGAGACCAGGGGCTGGCGGGTATG
AGAATAACCCCGCCAACCGAGAAGCAAGGGCTCCGGCGGATGAGGAGACC
GCGACGCCCGCCCTCATGTCAGGCATCTCTTTGTTGTCAGCGCACTTGAG
ACGGGATTGAATGGTAACCAACACTTTGGGGGAGATTCGCAAGCGTGCCG
ACCTCTGCGACAGCAAAGGGGCCATGCTCAAAGTGGACATAGAAAATGAA
GCGACCGAAGTCGACAAGCTTCTGCAGTCGAAGAAGCGCAAGCTGGCGGA
GATAGCAGAACTGAAAAGTCGCGTCTCGGTGATGCGCAGAAAGGTGCTGG
ACCTGACGTCCTCTCGGTGCGCGAGCTGGTGCAAGGCGCTTAGGCcggcg
gaggcagcggcagccgaggcaggggcggaaAGGCGCGCGGCGGCGCAAGC
GGTGGAATCTCTCAGGGGCCGGGACGTCTTGGCAGAGATATCGCCGCTGC
aagagaaggcgaggcaATGCGTGGAGGAGCTTGCGGGCGGCTCTGAGCTT
CTCGCCCGGCGCGTAGAAAGCTTGGGTCAGACTAGCACGGCCgtgacctc
cctcctgaaGTCCAAGCCGTCGCGAGTTGACAAAGCCATCCGTCAGGGGC
CGCGCGACGGACTGGAATCAAGGAAAAGCGCGCGCAAGAGACCAGGGGCT
GGCGGGTATGAGAATAACCCCGCCAACCGAGAAGCAAGGGCTCCGGCGGA
TGAGGAGACCGCGACGCCCGCCCTCATGTCAGGCATCTCTTTGTTGTCAG
CGCACTTGAGACGGGATTGA
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Synonyms
Publications