rna1439, rna1439 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1439
Unique Name	rna1439
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1542
Alignment location	CM002457.1:639213..641009 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100119g15.8008.mrna
Orig protein id	gnl\|cribi\|Naga_100119g15.8008
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:639213..641009 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100119g15	gene1389	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1439	rna1439-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29250.1	cds1437	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:639213..641009-
coding sequence from alignment at CM002457.1:639213..641009-

mRNA sequence

>rna1439 ID=rna1439|Name=rna1439|organism=Nannochloropsis gaditana|type=mRNA|length=1542bp
ATGAAGGAGGACAACGAGCATGCGATGCTTATCGAATCAGGTCATGCCTC
GCCTGGACCGCAAAAGACCACAAGGACTTCGTCAACATGCACTCAATCTT
CTCCCTGCCAAGCCATGATTGCATCACGTAAAGCTAGACTTGTCCTCATG
CTCTGCTGGGTGCTGACCGTGACAAGTGCCGCCCTGTCTTTCTTGCGGGG
CAAGCAACTGCCCGTGAGGCTCTTGAAAGAGTCCAGAGTAACGTGCCACG
GGAATTCCACCGAAACCCGGCAATGCGTTTTTCGCGATGTGATTGTAGAG
AATGGCGTCATTTGGCTCTATAAGACGCATCCTGACTCAGGGATTCCGCG
GGTTCTGTGCTCCCAGGTCAATCAACCCTCCTCTTTCGCCCGCGAATGCG
AGATTCGCATCGTTTCTGACGGGCGGAAGTACGCGCACTTGTTGCGGAAG
GCTTCAAAATCATTACTACTGGATGTGGGCGTGGCATTGAGCCGTCTAAA
CCCCAGCAACGTCTACCACGCGATATTCGAGGACCTGATCCCGACGATCG
CCATGATGCGGAAGGTGGGAAATGTCTCGGTGGACCCCACAGCCATGTCC
GACGCCTTGCGGCAGCGGCGCTGGGGAGTTTTTATAACCGACAACGAGGG
CGATAGCCTGTTGGACGGAGAAATCTGGCGACAGATACTGCCCGAGGTGG
CGATGGTGCATCCGTTAGGTCGGGCGCATCGCGTGCGAAAACTTATCGCA
GGCACGCAAGTCTCATGCGCGCATTGGGGGCACTGCCAGCCGACGGATCG
TCCCAGTGGTCTTTTCAACCCACCCGATGCGGCCCTGTCTTTCCGACGGT
TTGTGTTCCATCGCTTTGGCATCGAGGAAGGAGTAGAGGAAACAGCACAC
GCCAGTACGAGCACTATCGGTCTGGGGGTCCCCAGAGTAACCCTGGTGCA
GCGCTCGAGCACGCGGCGGCTCCAAAATTTGGGGGAGATAGTGGAAGCTT
TGACGGCCGTATCGGGCGCCTCTCCCAGGGTGGTGGACATGTCAAACCTC
TCGGTGAGGGAACAGGTGGGGCTAGCCCACGACACGGACATCTACGTGCT
GGTCCATGGCGGGGCCCTGGCCAACCTCCTCTGGCTACCAGAGGGCGCAA
TGATCGTCGACATATATCCGTACGGCTTTTACATATCACACCACAGCGGC
ATCGTTCACTGGATCCGGAAGGCCTTGGAGCCCGGCCTTGGTCTGGGACA
TCATCCCTTTCAAGTCAATTCCTCGGAGGGTCAGGTGCTTTTGGACGGCC
CTCTGCCGGCTGGCTGTGTCTGTCGTTCCCTGGAATGCCAGATTCACCTT
TTCGCCACCGTTGCCTCCATCACGGTGGCAGTGGATGCTTTCAAGAACCA
CATGAAGGACGCTCTCCGGCTGTGGCGGATCAAGAGGAAGTACGCAGCAG
CCACGACGCCAGCGGAATTTATGAAACTGCAGGCACAGATAGTCGAGACC
AGGACTATGGCGCGTGATCCAGCCCCTCTCTGCGCGAGGTGA

protein sequence of rna1439

>rna1439-protein ID=rna1439-protein|Name=rna1439|organism=Nannochloropsis gaditana|type=polypeptide|length=483bp
MPQSFWSRAYRDGGQSRTLRPLPASLLVALAFVTPTVYFFFQPSASSSTL
LSGQLPSFGPSSFPKYEGLSLSQPGLPVRQDNSRIAAMLRGNSEVSGQNV
SDIQTVSHGMEMKFAKSLDEPRTLVIYVYHESQEWYRENLRFFIRVAMQD
NDNNSTDYLLVVNGNSDLPLRGLLASTLAQREGRVWVLQRANTCYDGGTV
GEVLRTHPHLAESYFYYVLMNSSVRGPFLPRYFQRMKGEEGHAEPRRRSW
TSPLTSLLNDEVKLAGTTLSCMGQVHVQSMVLATDRIGLKVLLGDGVLNC
ASTLSDAIRTYEMGASTAILNAGYNVDSLMTRYTGVDWRQKRDLYCNAGM
NPQGEHMNDGLGLDPFEVVFVKAKEFPRVAATQAFLRRYTEYYMDRDDLV
SNDFMSPRLQAALKEEKEALRERVLRCQATFDAEFYFTQNPDLKGAVKEA
DAERHFYEYGFFERRPYHFIKESAGERDGCPFD

mRNA from alignment at CM002457.1:639213..641009-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1439 ID=rna1439|Name=rna1439|organism=Nannochloropsis gaditana|type=mRNA|length=1797bp|location=Sequence derived from alignment at CM002457.1:639213..641009- (Nannochloropsis gaditana)
TATATTCTTTAAAAAACACGATGCAATCTAATCCCAATAACAGCAATGCC
ACAATCCTTTTGGTCCAGAGCCTATCGCGATGGCGGGCAGTCGCGCACAC
TTAGACCTCTTCCTGCGTCTCTACTGGTAGCCCTCGCGTTTGTGACTCCG
ACGGTATATTTTTTTTTCCAACCATCTGCATCATCATCAACTTTGTTGTC
TGGACAATTACCTTCTTTCGGGCCCTCCTCATTCCCTAAATACGAGGGTT
TATCATTGTCGCAGCCAGGCCTTCCTGTGCGCCAGGACAACTCAAGGATT
GCCGCAATGCTGCGCGGCAACAGTGAGGTTTCCGGCCAAAATGTCAGCGA
TATTCAAACTGTATCACATGGAATGGAAATGAAATTTGCCAAATCACTAG
ACGAACCTCGAACTCTGGTAATATATGTATACCACGAATCGCAAGAATGG
TACCGGGAAAATTTGCGGTTCTTCATAAGAGTAGCAATGCAAGATAATGA
CAACAACTCTACAGACTACCTTCTGGTTGTAAATGGAAATAGTGATCTTC
CTCTTCGTGGGTTATTGGCCTCGACATTGGCTCAAAGGGAGGGACGCGTG
TGGGTGCTTCAACGAGCAAACACGTGCTACGACGGAGGCACCGTGGGAGA
GGTGCTCCGGACTCACCCGCACCTGGCCGAATCATATTTTTACTATGTGC
TGATGAACAGCTCTGTCCGTGGGCCCTTCTTGCCGCGCTATTTCCAGAGG
ATGAAGGGGGAGGAGGGGCACGCTGAGCCGCGTCGACGTTCTTGGACCTC
TCCTCTGACAAGCTTGCTCAATGATGAGGTCAAGCTAGCTGGCACCACCC
TGAGCTGCATGGGGCAGGTGCACGTGCAATCGATGGTCCTTGCCACAGAT
CGTATCGGGTTGAAAGTGCTGCTCGGTGACGGCGTGCTAAACTGTGCCAG
CACCCTGAGTGACGCCATTCGGACTTACGAGATGGGGGCTTCCACAGCGA
TTTTAAATGCCGGGTAGGTTGATAGGGAGGGAAAGAGATGAGAGGGCTCT
GGACTTTCCAGGGGTAGGCTGTTTTGGATTGCGCCCTCAAACCACGACAT
GATACAATTTAAGTGACGTTCACGGACTCGGATGTGAACCCCTCTGCATA
TTAGGTACAACGTGGACAGTCTCATGACGCGCTATACGGGAGTAGATTGG
CGTCAAAAACGCGACTTGTATTGCAATGCAGGCATGAATCCGCAAGGCGA
GCACATGAATGACGGACTGGGGTTGGACCCCTTTGAGGTGGTCTTCGTCA
AGGCGAAGGAGTTCCCCCGAGTGGCCGCCACACAGGCCTTCCTACGGCGC
TACACGGAGTACTACATGGACCGGGACGACCTTGTTAGTAATGACTTCAT
GTCTCCGCGCCTGCAGGCGGCCCTGAAGGAAGAAAAAGAGGCTTTGCGGG
AGCGAGTGCTTCGGTGTCAGGCCACCTTTGACGCCGAGTTCTACTTCACA
CAAAACCCGGACTTAAAGGGTGCAGTCAAGGAGGCGGATGCTGAGAGACA
TTTTTATGAGTACGGCTTCTTCGAGCGACGACCCTACCACTTTATAAAGG
AGTCCGCGGGAGAGCGAGACGGCTGTCCTTTTGACTAGTGTAAGCCGTCA
GGGATGAGCCAATGTATTCTTGTGTATAAAATCACAAAAAGACACCAATA
CGAAAATTTAAGACTGGTGATGACGATAATTTTTTGTTTCCACACGCGCG
TTAACGAAGACTGGTATAAAAAAGTACAAGTACTCAGAACACAAAGA

Coding sequence (CDS) from alignment at CM002457.1:639213..641009-

>rna1439 ID=rna1439|Name=rna1439|organism=Nannochloropsis gaditana|type=CDS|length=2904bp|location=Sequence derived from alignment at CM002457.1:639213..641009- (Nannochloropsis gaditana)
GTACAACGTGGACAGTCTCATGACGCGCTATACGGGAGTAGATTGGCGTC
AAAAACGCGACTTGTATTGCAATGCAGGCATGAATCCGCAAGGCGAGCAC
ATGAATGACGGACTGGGGTTGGACCCCTTTGAGGTGGTCTTCGTCAAGGC
GAAGGAGTTCCCCCGAGTGGCCGCCACACAGGCCTTCCTACGGCGCTACA
CGGAGTACTACATGGACCGGGACGACCTTGTTAGTAATGACTTCATGTCT
CCGCGCCTGCAGGCGGCCCTGAAGGAAGAAAAAGAGGCTTTGCGGGAGCG
AGTGCTTCGGTGTCAGGCCACCTTTGACGCCGAGTTCTACTTCACACAAA
ACCCGGACTTAAAGGGTGCAGTCAAGGAGGCGGATGCTGAGAGACATTTT
TATGAGTACGGCTTCTTCGAGCGACGACCCTACCACTTTATAAAGGAGTC
CGCGGGAGAGCGAGACGGCTGTCCTTTTGACTAGATGCCACAATCCTTTT
GGTCCAGAGCCTATCGCGATGGCGGGCAGTCGCGCACACTTAGACCTCTT
CCTGCGTCTCTACTGGTAGCCCTCGCGTTTGTGACTCCGACGGTATATTT
TTTTTTCCAACCATCTGCATCATCATCAACTTTGTTGTCTGGACAATTAC
CTTCTTTCGGGCCCTCCTCATTCCCTAAATACGAGGGTTTATCATTGTCG
CAGCCAGGCCTTCCTGTGCGCCAGGACAACTCAAGGATTGCCGCAATGCT
GCGCGGCAACAGTGAGGTTTCCGGCCAAAATGTCAGCGATATTCAAACTG
TATCACATGGAATGGAAATGAAATTTGCCAAATCACTAGACGAACCTCGA
ACTCTGGTAATATATGTATACCACGAATCGCAAGAATGGTACCGGGAAAA
TTTGCGGTTCTTCATAAGAGTAGCAATGCAAGATAATGACAACAACTCTA
CAGACTACCTTCTGGTTGTAAATGGAAATAGTGATCTTCCTCTTCGTGGG
TTATTGGCCTCGACATTGGCTCAAAGGGAGGGACGCGTGTGGGTGCTTCA
ACGAGCAAACACGTGCTACGACGGAGGCACCGTGGGAGAGGTGCTCCGGA
CTCACCCGCACCTGGCCGAATCATATTTTTACTATGTGCTGATGAACAGC
TCTGTCCGTGGGCCCTTCTTGCCGCGCTATTTCCAGAGGATGAAGGGGGA
GGAGGGGCACGCTGAGCCGCGTCGACGTTCTTGGACCTCTCCTCTGACAA
GCTTGCTCAATGATGAGGTCAAGCTAGCTGGCACCACCCTGAGCTGCATG
GGGCAGGTGCACGTGCAATCGATGGTCCTTGCCACAGATCGTATCGGGTT
GAAAGTGCTGCTCGGTGACGGCGTGCTAAACTGTGCCAGCACCCTGAGTG
ACGCCATTCGGACTTACGAGATGGGGGCTTCCACAGCGATTTTAAATGCC
GGGTACAACGTGGACAGTCTCATGACGCGCTATACGGGAGTAGATTGGCG
TCAAAAACGCGACTTGTATTGCAATGCAGGCATGAATCCGCAAGGCGAGC
ACATGAATGACGGACTGGGGTTGGACCCCTTTGAGGTGGTCTTCGTCAAG
GCGAAGGAGTTCCCCCGAGTGGCCGCCACACAGGCCTTCCTACGGCGCTA
CACGGAGTACTACATGGACCGGGACGACCTTGTTAGTAATGACTTCATGT
CTCCGCGCCTGCAGGCGGCCCTGAAGGAAGAAAAAGAGGCTTTGCGGGAG
CGAGTGCTTCGGTGTCAGGCCACCTTTGACGCCGAGTTCTACTTCACACA
AAACCCGGACTTAAAGGGTGCAGTCAAGGAGGCGGATGCTGAGAGACATT
TTTATGAGTACGGCTTCTTCGAGCGACGACCCTACCACTTTATAAAGGAG
TCCGCGGGAGAGCGAGACGGCTGTCCTTTTGACTAGATGCCACAATCCTT
TTGGTCCAGAGCCTATCGCGATGGCGGGCAGTCGCGCACACTTAGACCTC
TTCCTGCGTCTCTACTGGTAGCCCTCGCGTTTGTGACTCCGACGGTATAT
TTTTTTTTCCAACCATCTGCATCATCATCAACTTTGTTGTCTGGACAATT
ACCTTCTTTCGGGCCCTCCTCATTCCCTAAATACGAGGGTTTATCATTGT
CGCAGCCAGGCCTTCCTGTGCGCCAGGACAACTCAAGGATTGCCGCAATG
CTGCGCGGCAACAGTGAGGTTTCCGGCCAAAATGTCAGCGATATTCAAAC
TGTATCACATGGAATGGAAATGAAATTTGCCAAATCACTAGACGAACCTC
GAACTCTGGTAATATATGTATACCACGAATCGCAAGAATGGTACCGGGAA
AATTTGCGGTTCTTCATAAGAGTAGCAATGCAAGATAATGACAACAACTC
TACAGACTACCTTCTGGTTGTAAATGGAAATAGTGATCTTCCTCTTCGTG
GGTTATTGGCCTCGACATTGGCTCAAAGGGAGGGACGCGTGTGGGTGCTT
CAACGAGCAAACACGTGCTACGACGGAGGCACCGTGGGAGAGGTGCTCCG
GACTCACCCGCACCTGGCCGAATCATATTTTTACTATGTGCTGATGAACA
GCTCTGTCCGTGGGCCCTTCTTGCCGCGCTATTTCCAGAGGATGAAGGGG
GAGGAGGGGCACGCTGAGCCGCGTCGACGTTCTTGGACCTCTCCTCTGAC
AAGCTTGCTCAATGATGAGGTCAAGCTAGCTGGCACCACCCTGAGCTGCA
TGGGGCAGGTGCACGTGCAATCGATGGTCCTTGCCACAGATCGTATCGGG
TTGAAAGTGCTGCTCGGTGACGGCGTGCTAAACTGTGCCAGCACCCTGAG
TGACGCCATTCGGACTTACGAGATGGGGGCTTCCACAGCGATTTTAAATG
CCGG

Synonyms

Publications