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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100119g8.7996.mrna |
| Orig protein id | gnl|cribi|Naga_100119g8.7996 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:616277..618921 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1431 ID=rna1431|Name=rna1431|organism=Nannochloropsis gaditana|type=mRNA|length=1528bp
TTTGGCCCTTTCCAACTTGGCGGCCATATTACACAGTTCCACGACTTCAT
TGAGGGTGAGAAAGTGCACACAATGCACCGAAATACCTCAACAGAGCAGG
AGCAATGGAATGTTGGTATCACCGAGGACATGCGTGGGAAGGATGGTGCA
AACCTTGGGCGAGTCGCCGAAGAATGTGACCCTCTTTCCCTTCCTTTATT
CACCGTATATTCATCATCAGCCTTACTACTTCTACGTATCCACAGAATGT
CAAACCGGAATTTCAACATTGTTCATGGCTTCGCCTCATCAGAGGCTGGA
GAGGCAGCTGAGACTGTTGAGGCCATGGAGAAAGTAGAAATTCCAGTTTG
AAATGACATTCTGTGGACATGGAAGTAAATAGTGTTTGGTTATTGGTGAA
TATATGGTAAATAAATAAAGGGCAAAAAGGTGTGCACCTTGCCATCGAGG
TGCAGCATCATACCTTTTCACACCTGCACCTTCGCACCTTCGCACTTTTT
CGAAGGTGCGTGCCTTCCCAGCTGTTGAGGCCACTCGCGCGGAGGACCAT
TACCGCGCAAATGGGATTAACAAATATTCCTTAGAACCCACGGCTATATA
CAAGCACAAGACCCATGTTGCGGAAGAACCCCTTCTGTGACATGACGAAA
AAGATCTCAACGACATCTTCTGCATGAAATGCGATGTCATGATCAGGAAC
GGCGGGCTTTCCCACGTTAGGGACCATCATAGAAGGCACCACGGTCGCTG
CGATGAATCAACGACAGACACCGGTATTGGCTCGGTGCAGCTCAAGATGA
CTGACACGGACCCTTACTCGGCCGAAATACAGGGGCCGTTCCTAATCATG
ACATCGCATTTCAAGCAGAAGATGTCGTTGAGGTGTTTTTATTCTATCGA
CATGTCATAGAGGGGCTTCTTCCGCAACCTATGGGTCTTACGCTTGTCCA
TAGCTGTAGGTTTTCAGGAATATTTGTTAAACCTGTTAACGCGGTAATCG
TCCTCCGCGCGAGTGGCCTCAACACCCCCAGCTGCCTCTCCAGCCTCAGC
TGAGGCTGATGAGGCGAGGCGATGGACAAAGTTGAGATTCCGGTTAAAAA
TGACATTCTGTGGACACTTAGAAGTAACAAGTATTTGACTGATGGTGAAT
ATACGGTGAATAAAGGAAGGGGGTCACGTTGGTTTCTTACCCACAACGTT
GTGGAACTCTGTAAAATGGCCGCTAAGCTGGAAAGGGCAAAAAAGTTGCG
CACCTTGCCATCGAAATGCACCACTGCACCTTTTATGGCGCGTCCATTCC
CTGCCCCCTGGTCCCTAGGCTATCATTCGCGCTCTCTCGACCTGGTTCAC
CCAATTCATCGCACTACAACCATTTCACAGTCTCGTTATGTTACAAAGGA
AAAAAAGACCTGCTACCCTTTCGGAGCCTTCTTTCGGATCAGTAACGACA
CATAAGATTCAACCCTCTCGGAGATGAAAGTCTCACCCCAGACGTGTTTA
AAAAAAAAATCAACATACTGGCGTATCA back to topprotein sequence of rna1431 >rna1431-protein ID=rna1431-protein|Name=rna1431|organism=Nannochloropsis gaditana|type=polypeptide|length=444bp
MVSAVWPRNIMTPQLWGMLCIMASIVLVARQRTQSFPLQSKQGRASNPYQ
VLGSGDVASGVRYKPQTYDDGSDNISYKTLVIYVYHESDAVTKENLQFFL
KAGVGDVEDPLTDYVIVVNGETTLDLDGLPPNVRIKYRDNTCYDGGSAGV
VLAEVNIAEYHFFIIMNSSVRGPFLPSYFSHTAGGGLGVGSSLYAQSRPW
TTAFTDLLNSYVKLAGTTINCEVHVHVQSMLLATDSVGLKILIDSGAFEC
ARDRDAAIANYELGASARIMENGYSVDCLMLRYAGVDWLSLKSPKCNQLL
NPYVPLYNDGMSLNPLEVVFVKVKPHTLASDHTVQRWTDYVLGRDDLVSS
FFYSSTVQRVVADRRKRLERMVRDCDASFDHASFLERHPELDPAAKSANY
ELFLDKYLFSGEPYRYTVPHKREEDVPHLYCRSFVKYGVPDFSD back to topmRNA from alignment at CM002457.1:616277..618921+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1431 ID=rna1431|Name=rna1431|organism=Nannochloropsis gaditana|type=mRNA|length=2645bp|location=Sequence derived from alignment at CM002457.1:616277..618921+ (Nannochloropsis gaditana)
ACGCATGTCCTCGGTGATACCAACATTCCATTGCTCCTGCTCTGTTGAGG
TATTTCGGTGCATTGTGTGCACTTTCTCACCCTCAATGAAGTCGTGGAAC
TGTGTAATATGGCCGCCAAGTTGGAAAGGGCCAAAAAGGTGCGCACCTTG
TCACCACTGCAGCTTTCAAGGCGCGTCATTTGCTGGCGTCAGGCACGAAA
CCGACGGCACGGGCACTTACTTTGTCTCACAAGCCCTTCTTAGGCACCAG
GCGCGAGCATTGCGCCTTTTCTTTCGAGATGGCATGAGCCATCTCCGCGT
CGACGTAGCTTTCACACGTTATTGGCGTGCATGTCGACTCTTCCGGTGCA
ACACGAGATGTTGAGTAACAGATTTTAGTTTTGTCGGGGGAGCTTCTCAC
ACGGTGTCCTGCTACTTTGATGTCGAATGCCCTCTGCTATAGCTTTTCGT
CGCATAAGAAATGTAGTAGAGAGCGCGAGAGATATTGAGAAGTGAGAGGA
ACATACATTGTGCCCCAAAATTGATTTTGCAAGCTGTCTCTACACATACA
CCCCGGACACCGACTACGCAGGGTTGGAATGGTGTCAGCAGTATGGCCGC
GTAACATCATGACACCCCAGCTTTGGGGAATGCTGTGCATTATGGCGAGC
ATCGTCTTGGTAGCTCGGCAGCGGACACAGTCGTTTCCTCTTCAGTCCAA
GCAAGGGAGAGCTTCCAACCCGTACCAAGTGCTGGGCTCTGGTGATGTGG
CCTCGGGCGTGCGATACAAACCACAGACATACGACGATGGTTCTGACAAC
ATTTCATATAAGACACTTGTCATATACGTGTACCATGAGAGCGATGCAGT
CACGAAGGAGAACTTACAGTTTTTTTTAAAGGTGTAAAGCGTGGAGAGAG
CGGAGGGGGCATTTAAGTTCGAGTCTCGAGCAGCATTTTAGAATCGCGTT
CAAGAACCACAACAAAAAGTTAAGCCTCCTTTCTAAgactccctcttttt
ctaaTACTAGGCTGGTGTAGGAGATGTGGAAGATCCGCTCACCGACTACG
TCATTGTAGTCAATGGGGAAACAACACTGGACTTGGACGGGCTGCCCCCC
AACGTGCGCATAAAATACCGGGACAACACTTGCTACGACGGGGGCAGTGC
TGGAGTAGTTTTGGCTGAAGTTAACATTGCAGAATATCACTTTTTCATCA
TCATGAACAGCTCGGTTCGCgggcctttcctcccctcctacttCTCTCAC
ACTGCCGGGGGCGGTCTGGGAGTTGGTTCTTCCTTATATGCGCAATCGCG
GCCGTGGACGACGGCTTTTACGGATCTTTTAAACTCCTATGTCAAACTGG
CGGGCACCACCATCAATTGCGAGGTGCATGTGCATGTTCAATCCATGCTG
TTGGCCACTGACTCCGTCGGCCTGAAGATCTTGATCGATTCGGGTGCATT
CGAGTGCGCGCGGGATCGGGATGCTGCCATTGCCAACTACGAGTTGGGTG
CCAGTGCCCGGATCATGGAAAATGGGTGAGTACGAGGGGGGCTGCTCGGC
TTGTGCAGGTAATGAGCCTCTTTTCGCTGACCTCCCATGTCGCCCGCGCA
GGTATAGCGTCGACTGCCTTATGCTCCGGTACGCCGGCGTAGATTGGCTT
TCACTCAAGTCACCGAAATGTAATCAGTTGCTGAATCCGTACGTGCCGCT
CTACAACGACGGCATGTCCCTCAACCCCCTGGAGGTGGTATTCGTCAAGG
TCAAGCCGCACACGCTCGCTTCCGACCACACTGTGCAGCGCTGGACGGAC
TACGTGCTCGGGAGGGACGACCTGGTGAGTAGTTTCTTTTACAGCTCCAC
CGTCCAGCGTGTAGTAGCGGACAGGCGAAAGCGGTTGGAGCGCATGGTGC
GAGACTGCGACGCCTCCTTCGACCATGCGAGCTTCCTCGAACGGCACCCA
GAGCTGGACCCAGCGGCCAAGTCTGCCAACTACGAGCTCTTCCTCGACAA
ATACCTTTTTTCCGGTGAGCCTTACCGCTACACAGTACCacacaagaggg
aggaggacgttcCACATCTATACTGTCGCTCCTTTGTCAAATACGGGGTT
CCCGACTTTTCAGACTGAGGAATTTGTGAGAGGATAGGTTAGAGGACTCC
CTGCAAAATATGCGACCATGGAGGAGCTTGAAAACTGTACAGTTCGGATG
TAACAGGACGTTAATGCGAATTGGCGTCTCGGACACGTGCCCGGGAATCG
CCACGATGGACCGTGGCCGTGGAGCCCCCGTCACTTACATTGATAGTCAG
GCAAAGTGGCTTGATATTACAAGCCAAAATCAAAGTCAACGACGGCTGGC
ATTTATCTCTGGTTTCATGGGATTTAATATTTACATGCTTTGCTTAACGT
TGGCGATGTAAAATCTTCCAACAGCGACAAAAAGGACGCATCGCAGGTAT
TTGACAACGATAGCACGTTTCATCGCACCTCGAATTCCGTACGTATGAGA
CCCCTCCGTTCTCTCATTGGACGTGGTTGGATGTGAATTCTACAAATCTG
CGTGCATACCACTTAGGATCCACAGCAGATATCTGGCGAGAATCGTACTT
GAAGCTTTTGAAAAAGGTCTCTGCCCGCTTCAAGGCATTGTATTG back to topCoding sequence (CDS) from alignment at CM002457.1:616277..618921+ >rna1431 ID=rna1431|Name=rna1431|organism=Nannochloropsis gaditana|type=CDS|length=4005bp|location=Sequence derived from alignment at CM002457.1:616277..618921+ (Nannochloropsis gaditana)
ATGGTGTCAGCAGTATGGCCGCGTAACATCATGACACCCCAGCTTTGGGG
AATGCTGTGCATTATGGCGAGCATCGTCTTGGTAGCTCGGCAGCGGACAC
AGTCGTTTCCTCTTCAGTCCAAGCAAGGGAGAGCTTCCAACCCGTACCAA
GTGCTGGGCTCTGGTGATGTGGCCTCGGGCGTGCGATACAAACCACAGAC
ATACGACGATGGTTCTGACAACATTTCATATAAGACACTTGTCATATACG
TGTACCATGAGAGCGATGCAGTCACGAAGGAGAACTTACAGTTTTTTTTA
AAGGCTGGTGTAGGAGATGTGGAAGATCCGCTCACCGACTACGTCATTGT
AGTCAATGGGGAAACAACACTGGACTTGGACGGGCTGCCCCCCAACGTGC
GCATAAAATACCGGGACAACACTTGCTACGACGGGGGCAGTGCTGGAGTA
GTTTTGGCTGAAGTTAACATTGCAGAATATCACTTTTTCATCATCATGAA
CAGCTCGGTTCGCgggcctttcctcccctcctacttCTCTCACACTGCCG
GGGGCGGTCTGGGAGTTGGTTCTTCCTTATATGCGCAATCGCGGCCGTGG
ACGACGGCTTTTACGGATCTTTTAAACTCCTATGTCAAACTGGCGGGCAC
CACCATCAATTGCGAGGTGCATGTGCATGTTCAATCCATGCTGTTGGCCA
CTGACTCCGTCGGCCTGAAGATCTTGATCGATTCGGGTGCATTCGAGTGC
GCGCGGGATCGGGATGCTGCCATTGCCAACTACGAGTTGGGTGCCAGTGC
CCGGATCATGGAAAATGGGTATAGCGTCGACTGCCTTATGCTCCGGTACG
CCGGCGTAGATTGGCTTTCACTCAAGTCACCGAAATGTAATCAGTTGCTG
AATCCGTACGTGCCGCTCTACAACGACGGCATGTCCCTCAACCCCCTGGA
GGTGGTATTCGTCAAGGTCAAGCCGCACACGCTCGCTTCCGACCACACTG
TGCAGCGCTGGACGGACTACGTGCTCGGGAGGGACGACCTGGTGAGTAGT
TTCTTTTACAGCTCCACCGTCCAGCGTGTAGTAGCGGACAGGCGAAAGCG
GTTGGAGCGCATGGTGCGAGACTGCGACGCCTCCTTCGACCATGCGAGCT
TCCTCGAACGGCACCCAGAGCTGGACCCAGCGGCCAAGTCTGCCAACTAC
GAGCTCTTCCTCGACAAATACCTTTTTTCCGGTGAGCCTTACCGCTACAC
AGTACCacacaagagggaggaggacgttcCACATCTATACTGTCGCTCCT
TTGTCAAATACGGGGTTCCCGACTTTTCAGACTGAATGGTGTCAGCAGTA
TGGCCGCGTAACATCATGACACCCCAGCTTTGGGGAATGCTGTGCATTAT
GGCGAGCATCGTCTTGGTAGCTCGGCAGCGGACACAGTCGTTTCCTCTTC
AGTCCAAGCAAGGGAGAGCTTCCAACCCGTACCAAGTGCTGGGCTCTGGT
GATGTGGCCTCGGGCGTGCGATACAAACCACAGACATACGACGATGGTTC
TGACAACATTTCATATAAGACACTTGTCATATACGTGTACCATGAGAGCG
ATGCAGTCACGAAGGAGAACTTACAGTTTTTTTTAAAGGCTGGTGTAGGA
GATGTGGAAGATCCGCTCACCGACTACGTCATTGTAGTCAATGGGGAAAC
AACACTGGACTTGGACGGGCTGCCCCCCAACGTGCGCATAAAATACCGGG
ACAACACTTGCTACGACGGGGGCAGTGCTGGAGTAGTTTTGGCTGAAGTT
AACATTGCAGAATATCACTTTTTCATCATCATGAACAGCTCGGTTCGCgg
gcctttcctcccctcctacttCTCTCACACTGCCGGGGGCGGTCTGGGAG
TTGGTTCTTCCTTATATGCGCAATCGCGGCCGTGGACGACGGCTTTTACG
GATCTTTTAAACTCCTATGTCAAACTGGCGGGCACCACCATCAATTGCGA
GGTGCATGTGCATGTTCAATCCATGCTGTTGGCCACTGACTCCGTCGGCC
TGAAGATCTTGATCGATTCGGGTGCATTCGAGTGCGCGCGGGATCGGGAT
GCTGCCATTGCCAACTACGAGTTGGGTGCCAGTGCCCGGATCATGGAAAA
TGGGTATAGCGTCGACTGCCTTATGCTCCGGTACGCCGGCGTAGATTGGC
TTTCACTCAAGTCACCGAAATGTAATCAGTTGCTGAATCCGTACGTGCCG
CTCTACAACGACGGCATGTCCCTCAACCCCCTGGAGGTGGTATTCGTCAA
GGTCAAGCCGCACACGCTCGCTTCCGACCACACTGTGCAGCGCTGGACGG
ACTACGTGCTCGGGAGGGACGACCTGGTGAGTAGTTTCTTTTACAGCTCC
ACCGTCCAGCGTGTAGTAGCGGACAGGCGAAAGCGGTTGGAGCGCATGGT
GCGAGACTGCGACGCCTCCTTCGACCATGCGAGCTTCCTCGAACGGCACC
CAGAGCTGGACCCAGCGGCCAAGTCTGCCAACTACGAGCTCTTCCTCGAC
AAATACCTTTTTTCCGGTGAGCCTTACCGCTACACAGTACCacacaagag
ggaggaggacgttcCACATCTATACTGTCGCTCCTTTGTCAAATACGGGG
TTCCCGACTTTTCAGACTGAATGGTGTCAGCAGTATGGCCGCGTAACATC
ATGACACCCCAGCTTTGGGGAATGCTGTGCATTATGGCGAGCATCGTCTT
GGTAGCTCGGCAGCGGACACAGTCGTTTCCTCTTCAGTCCAAGCAAGGGA
GAGCTTCCAACCCGTACCAAGTGCTGGGCTCTGGTGATGTGGCCTCGGGC
GTGCGATACAAACCACAGACATACGACGATGGTTCTGACAACATTTCATA
TAAGACACTTGTCATATACGTGTACCATGAGAGCGATGCAGTCACGAAGG
AGAACTTACAGTTTTTTTTAAAGGCTGGTGTAGGAGATGTGGAAGATCCG
CTCACCGACTACGTCATTGTAGTCAATGGGGAAACAACACTGGACTTGGA
CGGGCTGCCCCCCAACGTGCGCATAAAATACCGGGACAACACTTGCTACG
ACGGGGGCAGTGCTGGAGTAGTTTTGGCTGAAGTTAACATTGCAGAATAT
CACTTTTTCATCATCATGAACAGCTCGGTTCGCgggcctttcctcccctc
ctacttCTCTCACACTGCCGGGGGCGGTCTGGGAGTTGGTTCTTCCTTAT
ATGCGCAATCGCGGCCGTGGACGACGGCTTTTACGGATCTTTTAAACTCC
TATGTCAAACTGGCGGGCACCACCATCAATTGCGAGGTGCATGTGCATGT
TCAATCCATGCTGTTGGCCACTGACTCCGTCGGCCTGAAGATCTTGATCG
ATTCGGGTGCATTCGAGTGCGCGCGGGATCGGGATGCTGCCATTGCCAAC
TACGAGTTGGGTGCCAGTGCCCGGATCATGGAAAATGGGTATAGCGTCGA
CTGCCTTATGCTCCGGTACGCCGGCGTAGATTGGCTTTCACTCAAGTCAC
CGAAATGTAATCAGTTGCTGAATCCGTACGTGCCGCTCTACAACGACGGC
ATGTCCCTCAACCCCCTGGAGGTGGTATTCGTCAAGGTCAAGCCGCACAC
GCTCGCTTCCGACCACACTGTGCAGCGCTGGACGGACTACGTGCTCGGGA
GGGACGACCTGGTGAGTAGTTTCTTTTACAGCTCCACCGTCCAGCGTGTA
GTAGCGGACAGGCGAAAGCGGTTGGAGCGCATGGTGCGAGACTGCGACGC
CTCCTTCGACCATGCGAGCTTCCTCGAACGGCACCCAGAGCTGGACCCAG
CGGCCAAGTCTGCCAACTACGAGCTCTTCCTCGACAAATACCTTTTTTCC
GGTGAGCCTTACCGCTACACAGTACCacacaagagggaggaggacgttcC
ACATCTATACTGTCGCTCCTTTGTCAAATACGGGGTTCCCGACTTTTCAG
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