rna1423, rna1423 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1423
Unique Name	rna1423
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1631
Alignment location	CM002457.1:600409..602037 +

Link to JBrowse

Properties


Property Name	Value
Product	flagellar associated protein
Orig transcript id	gnl\|cribi\|Naga_100029g2.9529.mrna
Orig protein id	gnl\|cribi\|Naga_100029g2.9529
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:600409..602037 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100029g2	gene1374	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1423	rna1423-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29272.1	cds1421	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:600409..602037+
coding sequence from alignment at CM002457.1:600409..602037+

mRNA sequence

>rna1423 ID=rna1423|Name=rna1423|organism=Nannochloropsis gaditana|type=mRNA|length=1631bp
CTTTCATTTTCGTATATCTGCAGGTGTGATACACGAATATCGAATTGTCA
ATACTACTGAAAATTCTCTAGCGAAATGACCAGCATATAAGGGATGCGCG
ATGCAATGTCTGCTTTTGGTATTTTGAAGGATTGCTTCAGTGGGAGGCAT
ACTAAAAAAATCAGGCCAGCTTACGCTGCGTCCTCGGATTCGCGCGTCTC
TTCTTGGACGTCCACGTCCAAAGCCTCCCCACATGCTCCCAAGAAAACCC
TCACTCAAACTTATTTGGATCTCGGCCAGAGATCGCACGGGAAACGCACG
CTTTGTGGCACATGTGGCCTCTTATACGTAAATGGCCAAGAGGAAGACGA
GAAAGACCATGTAAAATTCTGCCGGTCTGTTGCAGCTGGCCTTGTCTGCC
CCGGGTGGCGGGACCAGCGCCTAGTGTGGGGTCAAGAAGGAGTGGACGGG
AGGGTGATTGAGGTTCGCCCTGGGGATGGAGCAGCACCGCTCACAAAGAT
GAGGGAGGTGAAACGCGTGATGGATCAAGAAATGGGGTTTGTTCCCCTCA
GAGAAGGTGATATAGTGCTCAAGACCACAGAGAAGGCTTTCTTGTACGTG
CACGGAAGGCGCGTAGTGGGCTGCGTGATCGCAGAGAAGATAAATGTAGC
ACATCCTGTGTCAGGAACAATACCCTCAAAGGAAGGGTCTCATGTCTGCG
GAATGCAAAAGCGTTCGCGAGACTCAAGAGTGTCCGGGATTGCTGACTCT
CTGCACGGAGGAGAGGGAGAGGGCCCAGAGGGGAGGGTACCCGCGGCCTC
GGGGCAGAACGAGCACACCGACAGCATGCAGACCGCCACAGGTAAAATGG
CGGCGAGCACTGGTGGAGTGCTCAGACATGCGGACAAGAGCAGGGTGGGC
TTGAGTATGCTACCGCAAGGGGTGGAGTATCTGCACGAAAAAGTGGAGGC
AGCGATAGGGATCAAGCAGGTGTGGGTCAGCCAGAACATGCGGCGACAGG
GGATTGCCAAGCGCATGTTGGAAGTGGCGCGGGCACGATTCTTTTACGGC
TTCGTGGTTCCGCGGGGCAAAGTGGCCTTCTCCCAGTTGAGCACAGCCGG
CTACTCGTTCGCCCGCGCGTACGTCAAGCCCGGGAAGCTGCTTGTGTACT
AAACTGCTCTGCATCGAGAGGACCACTTAACGACTGGACGAAAGAGCTCG
GATTCTGACCACAACATGGCACACTCATCGCGTCAGGACGTTACTTTCTA
CGAGGGAGAGAAAGAACATGGTGGTAACTGAAGAACAAGGAATGAAATAA
AGCTTGGACCAATAATTTACGAATCTGTAATCATTTCGTTAGAGTTGACG
GCTCCGCAATAAAGGTCCTCGATGACTGAAGACAGCGAAATCAGGTCGGG
AGGAGGAAATGTCTTTGCAGCGGAGGGAAGCGTCTTGAGCAAGATGAATG
GGGCGAAAAGGGCCGGCTCCCAACAGGGCTCCTGCCAGCGAAACTGCGAA
TGCCGCAAGCAAATCCAACACCACGGCTGGGACAGAGGGACTTTCTGTGT
AGTTTATAGATCGAAATCGTGTAAGTGTTGACACTTTCGAAATTCATAAA
TAAGTATTGAAGACCACTCGCGAACCTTGCT

protein sequence of rna1423

>rna1423-protein ID=rna1423-protein|Name=rna1423|organism=Nannochloropsis gaditana|type=polypeptide|length=390bp
MEPAAEEIRSLAIRYGKAVEEKDKLLSILETDATDSQENLCLAQEAHSKQ
RDTLIEFHRAHVDTLQKAFDRDLQELEEEFQEEMLSLEKQHEEEKSELRQ
LLVGMETFEQTKEREGQELHARVRDNLKRQGEEQLAKLRHSLTSQIDSLV
QQLNDEKMFGFTENNDTQNSASGFSTSGAVGKALAAKDQSLTSQIESKVR
KIDQELQRWKEWRVKMTTSGKEHSERNQSLFNEKRALSDQYRKLKSHMNK
FRQEQYDALQVLNKVAASFLERLDGQVENEENEKGSEEPLSAFWRRYNHS
LLEKIALLERRDALDEENRALQATLQQYLDGVSISDETLRGANPLLVVQP
KAMTPPRSTKPSPWSQNPPIVIEGNHMLQTGRLGTAPFFG

mRNA from alignment at CM002457.1:600409..602037+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1423 ID=rna1423|Name=rna1423|organism=Nannochloropsis gaditana|type=mRNA|length=1629bp|location=Sequence derived from alignment at CM002457.1:600409..602037+ (Nannochloropsis gaditana)
AAAAATGGGCCGCACTCCAGCAACGGACAACGACATGGCCAAAGATGGAA
CCAGCAGCTGAAGAAATTAGATCCTTGGCCATTCGATACGGGAAAGCAGT
CGAGGAAAAAGATAAGCTGCTCAGTATTTTGGAAACTGATGCCACTGATT
CACAAGAAAATCTATGTTTAGCTCAGGAAGCTCATAGCAAGCAACGGGAT
ACATTGATAGAGTTTCACCGCGCTCACGTAGACACACTACAAAAAGCATT
TGATCGCGATTTGCAAGAACTTGAAGAAGAGTTCCAAGAGGAGATGCTTT
CGTTGGAGAAGcagcatgaggaggaaaagtcGGAACTCCGCCAGTTGCTG
GTAGGCATGGAAACATTCGAGCAGAccaaggagcgggagggacaggaaCT
CCATGCAAGAGTTCGCGATAATTTGAAGcgccagggagaggagcagtTAG
CCAAGCTTCGTCATTCTCTCACTTCGCAAATCGATTCATTGGTGCAGCAA
CTCAATGATGAGAAGATGTTTGGCTTCACGGAAAACAATGACACCCAGAA
TTCTGCAAGCGGCTTTTCCACATCCGGAGCGGTGGGCAAAGCGTTGGCTG
CTAAAGATCAGTCGCTTACGTCGCAGATTGAATCAAAAGTACGCAAAATT
GACCAGGAGCTTCAGCGCTGGAAAGAATGGCGGGTGAAGATGACAACAAG
CGGGAAGGAGCACAGTGAAAGGAATCAGTCCCTCTTCAATGAGAAGCGAG
CCCTTTCAGATCAGTACCGCAAGCTTAAGTCACATATGAATAAGTTTCGC
CAGGAGCAGTACGATGCGCTTCAAGTGCTAAACAAAGTGGCGGCTTCTTT
CCTTGAACGCCTGGACGGTCAAGTAGAGGTACGTGCAAGGGAGGTGTCAT
TTCTAGCACGGACCATACTATGCTAAAAGCATCACCATATGAGACTTACT
CTATATATACCGTCGCGGTCCAGCTTGGCCTACGAGTGTTGCATCTAGCA
GAGTGGGCtcacaagaaggaggtggagcaaAGCAGAGCCAGAGGCCTCCC
TAAAGCCGCGGAGGGCGCGGCGACCAGCCTGCCCAGCTCCCCTCatggtg
gcgatggcgaaGGACCCGAAAAGAACGAAGAGAATGAAAAAGGTTCCGAG
GAGCCTCTGAGCGCTTTCTGGAGACGCTATAATCATTCATTGCTGGAGAA
AATAGCTCTGTTGGAACGCCGCGACGCACTAGACGAAGAGAACCGCGCAC
TACAGGTGAGAAATAGGTTCAAGATTCAATTCTTTTCACCCTTTTTTTTC
AACTTGCATATTTTTGAAAAATAATCTTGTATTTTTGGGCCTACCTTCCC
AATCGCAGGCCACACTTCAACAGTACCTGGACGGCGTTAGCATCAGCGAC
GAGACCCTCCGTGGTGCCAATCCCCTGCTTGTCGTCCAACCCAAGGCAAT
GACGCCCCCTCGGAGCACCAAGCCGAGTCCTTGGAGCCAGAATCCTCCCA
TAGTCATAGAGGGGAACCACATGCTCCAGACGGGTCGCCTTGGCACGGCT
CCCTTCTTTGGATAGGCACCACAATGTAGGAGGATTTGAATGGTTAATCG
CACGAAAGAAATTTCACAGACAACTGCAA

Coding sequence (CDS) from alignment at CM002457.1:600409..602037+

>rna1423 ID=rna1423|Name=rna1423|organism=Nannochloropsis gaditana|type=CDS|length=3519bp|location=Sequence derived from alignment at CM002457.1:600409..602037+ (Nannochloropsis gaditana)
ATGGAACCAGCAGCTGAAGAAATTAGATCCTTGGCCATTCGATACGGGAA
AGCAGTCGAGGAAAAAGATAAGCTGCTCAGTATTTTGGAAACTGATGCCA
CTGATTCACAAGAAAATCTATGTTTAGCTCAGGAAGCTCATAGCAAGCAA
CGGGATACATTGATAGAGTTTCACCGCGCTCACGTAGACACACTACAAAA
AGCATTTGATCGCGATTTGCAAGAACTTGAAGAAGAGTTCCAAGAGGAGA
TGCTTTCGTTGGAGAAGcagcatgaggaggaaaagtcGGAACTCCGCCAG
TTGCTGGTAGGCATGGAAACATTCGAGCAGAccaaggagcgggagggaca
ggaaCTCCATGCAAGAGTTCGCGATAATTTGAAGcgccagggagaggagc
agtTAGCCAAGCTTCGTCATTCTCTCACTTCGCAAATCGATTCATTGGTG
CAGCAACTCAATGATGAGAAGATGTTTGGCTTCACGGAAAACAATGACAC
CCAGAATTCTGCAAGCGGCTTTTCCACATCCGGAGCGGTGGGCAAAGCGT
TGGCTGCTAAAGATCAGTCGCTTACGTCGCAGATTGAATCAAAAGTACGC
AAAATTGACCAGGAGCTTCAGCGCTGGAAAGAATGGCGGGTGAAGATGAC
AACAAGCGGGAAGGAGCACAGTGAAAGGAATCAGTCCCTCTTCAATGAGA
AGCGAGCCCTTTCAGATCAGTACCGCAAGCTTAAGTCACATATGAATAAG
TTTCGCCAGGAGCAGTACGATGCGCTTCAAGTGCTAAACAAAGTGGCGGC
TTCTTTCCTTGAACGCCTGGACGGTCAAGTAGAGAACGAAGAGAATGAAA
AAGGTTCCGAGGAGCCTCTGAGCGCTTTCTGGAGACGCTATAATCATTCA
TTGCTGGAGAAAATAGCTCTGTTGGAACGCCGCGACGCACTAGACGAAGA
GAACCGCGCACTACAGGCCACACTTCAACAGTACCTGGACGGCGTTAGCA
TCAGCGACGAGACCCTCCGTGGTGCCAATCCCCTGCTTGTCGTCCAACCC
AAGGCAATGACGCCCCCTCGGAGCACCAAGCCGAGTCCTTGGAGCCAGAA
TCCTCCCATAGTCATAGAGGGGAACCACATGCTCCAGACGGGTCGCCTTG
GCACGGCTCCCTTCTTTGGATAGATGGAACCAGCAGCTGAAGAAATTAGA
TCCTTGGCCATTCGATACGGGAAAGCAGTCGAGGAAAAAGATAAGCTGCT
CAGTATTTTGGAAACTGATGCCACTGATTCACAAGAAAATCTATGTTTAG
CTCAGGAAGCTCATAGCAAGCAACGGGATACATTGATAGAGTTTCACCGC
GCTCACGTAGACACACTACAAAAAGCATTTGATCGCGATTTGCAAGAACT
TGAAGAAGAGTTCCAAGAGGAGATGCTTTCGTTGGAGAAGcagcatgagg
aggaaaagtcGGAACTCCGCCAGTTGCTGGTAGGCATGGAAACATTCGAG
CAGAccaaggagcgggagggacaggaaCTCCATGCAAGAGTTCGCGATAA
TTTGAAGcgccagggagaggagcagtTAGCCAAGCTTCGTCATTCTCTCA
CTTCGCAAATCGATTCATTGGTGCAGCAACTCAATGATGAGAAGATGTTT
GGCTTCACGGAAAACAATGACACCCAGAATTCTGCAAGCGGCTTTTCCAC
ATCCGGAGCGGTGGGCAAAGCGTTGGCTGCTAAAGATCAGTCGCTTACGT
CGCAGATTGAATCAAAAGTACGCAAAATTGACCAGGAGCTTCAGCGCTGG
AAAGAATGGCGGGTGAAGATGACAACAAGCGGGAAGGAGCACAGTGAAAG
GAATCAGTCCCTCTTCAATGAGAAGCGAGCCCTTTCAGATCAGTACCGCA
AGCTTAAGTCACATATGAATAAGTTTCGCCAGGAGCAGTACGATGCGCTT
CAAGTGCTAAACAAAGTGGCGGCTTCTTTCCTTGAACGCCTGGACGGTCA
AGTAGAGAACGAAGAGAATGAAAAAGGTTCCGAGGAGCCTCTGAGCGCTT
TCTGGAGACGCTATAATCATTCATTGCTGGAGAAAATAGCTCTGTTGGAA
CGCCGCGACGCACTAGACGAAGAGAACCGCGCACTACAGGCCACACTTCA
ACAGTACCTGGACGGCGTTAGCATCAGCGACGAGACCCTCCGTGGTGCCA
ATCCCCTGCTTGTCGTCCAACCCAAGGCAATGACGCCCCCTCGGAGCACC
AAGCCGAGTCCTTGGAGCCAGAATCCTCCCATAGTCATAGAGGGGAACCA
CATGCTCCAGACGGGTCGCCTTGGCACGGCTCCCTTCTTTGGATAGATGG
AACCAGCAGCTGAAGAAATTAGATCCTTGGCCATTCGATACGGGAAAGCA
GTCGAGGAAAAAGATAAGCTGCTCAGTATTTTGGAAACTGATGCCACTGA
TTCACAAGAAAATCTATGTTTAGCTCAGGAAGCTCATAGCAAGCAACGGG
ATACATTGATAGAGTTTCACCGCGCTCACGTAGACACACTACAAAAAGCA
TTTGATCGCGATTTGCAAGAACTTGAAGAAGAGTTCCAAGAGGAGATGCT
TTCGTTGGAGAAGcagcatgaggaggaaaagtcGGAACTCCGCCAGTTGC
TGGTAGGCATGGAAACATTCGAGCAGAccaaggagcgggagggacaggaa
CTCCATGCAAGAGTTCGCGATAATTTGAAGcgccagggagaggagcagtT
AGCCAAGCTTCGTCATTCTCTCACTTCGCAAATCGATTCATTGGTGCAGC
AACTCAATGATGAGAAGATGTTTGGCTTCACGGAAAACAATGACACCCAG
AATTCTGCAAGCGGCTTTTCCACATCCGGAGCGGTGGGCAAAGCGTTGGC
TGCTAAAGATCAGTCGCTTACGTCGCAGATTGAATCAAAAGTACGCAAAA
TTGACCAGGAGCTTCAGCGCTGGAAAGAATGGCGGGTGAAGATGACAACA
AGCGGGAAGGAGCACAGTGAAAGGAATCAGTCCCTCTTCAATGAGAAGCG
AGCCCTTTCAGATCAGTACCGCAAGCTTAAGTCACATATGAATAAGTTTC
GCCAGGAGCAGTACGATGCGCTTCAAGTGCTAAACAAAGTGGCGGCTTCT
TTCCTTGAACGCCTGGACGGTCAAGTAGAGAACGAAGAGAATGAAAAAGG
TTCCGAGGAGCCTCTGAGCGCTTTCTGGAGACGCTATAATCATTCATTGC
TGGAGAAAATAGCTCTGTTGGAACGCCGCGACGCACTAGACGAAGAGAAC
CGCGCACTACAGGCCACACTTCAACAGTACCTGGACGGCGTTAGCATCAG
CGACGAGACCCTCCGTGGTGCCAATCCCCTGCTTGTCGTCCAACCCAAGG
CAATGACGCCCCCTCGGAGCACCAAGCCGAGTCCTTGGAGCCAGAATCCT
CCCATAGTCATAGAGGGGAACCACATGCTCCAGACGGGTCGCCTTGGCAC
GGCTCCCTTCTTTGGATAG

Synonyms

Publications