|
|
Properties
| Property Name | Value |
|---|
| Product | 5 - cytosolic iii |
| Orig transcript id | gnl|cribi|Naga_100029g5.9544.mrna |
| Orig protein id | gnl|cribi|Naga_100029g5.9544 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:595434..598218 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1420 ID=rna1420|Name=rna1420|organism=Nannochloropsis gaditana|type=mRNA|length=2436bp
AGACGCATGCCGAACGTCTGATTGGAACATTTTTGTGTGTCTACTGTGTT
GAGTGACTTCGATCAAAGCAGCAAATGTGCCGTCGGGTAATTGCCTCCCT
GTTCTTGATCGCCGGGGTCTCTTCACCTTGAGGGATGCATCGTCATGCAA
CAATTATTCCCTTTTGGGGGGCTTTACAATCGACAGCCACTGCCTTATTA
CAGACAGGTAAATGCTTACCATGCTTCGCGTCATGCCTGCAGCCCGAGTG
TTCAGGGCGAGTGCACGTCGGTTGGGAGTGAGCACTGGCACACAAAACCA
CGCGAAAAAGAAGAATGCGACGACACAACTGGAAACACGAGCGCGTTTCT
TTTCTTCCAACGCGCAATCGGACGAAAGCGCACCCGAACGAGACGTAATG
GACTATGATGTCGTTACTGTGGGCGCCGGGCCAGCGGGCTTAGCTGCCGC
CATACGCCTCAAGCAATTAGCAAATGCACAAAATAAGGAGTTGAGCGTCT
GTGTCCTGGAAAAAGGCGCGGAGGTTGGAGCGCACATCTTATCTGGCAAT
GTCTTCGAGCCACGGGCCTTGGATGAGCTTATCCCTGACTGGAGGGAGAA
GGGGGCGCCCATAGACACGCCAGTAACGGAAGACGCCTTTCTAATCCTCT
ACGACGACAAGAAGTCCGTGCGACTCCCGAACGCTCTCTTGCCCCCCCAG
CAGCACAATGACGGAAACTATGTTGTGAGCTTGAGCCAGTTGGTGCGCTG
GCTCGGTGAGCAGGCAGAGGAGCTCGGTGTGGACATCTTTCCCGGCTTTT
CGGCCGCAGAAGTGCTCTACGACGAGGGCTCCGGGGGGGTGGTAGGGGTG
GCCACGCGCGACGTGGGCATCAGCAAGGACGGCAGCAAGAAGAGCAACTA
CCAGCCGGGCATTGAACTGCGGGGGAAGCAGACGATCTTCGCGGAAGGCG
CGCGCGGATCTTGTTCCGAGGCGGTGATGAAAAAATTCGACTTGAGGGCT
GCGGCCGACGTGCAGACCTACGGCCTCGGCGTCAAGGAGGTGTGGGAGGT
CCCAGAGGCGAATTTCAAACCAGGCTTCGTCATGCACACGCTGGGGTGGC
CCCTGCAAACGGGGCCTCTGGACACGACCTTCGGAGGCTCCTTTCTCTAC
CACCTGAAGCCAAATCTCGTGCTCCTCGGGATGGTTGTGGGGCTCGACTA
TGAAAATCCGTACCTGAACCCTTACAAGGAGTTCCAGCGCTGGAAGCTGC
ATCCGGACATCCTGAGACACATCCAGGACGGCCAGGTCATCTCCTATGGC
GCGCGAGTCCTGAATGAGGGAGGCTATCATGCCATTCCGAAGTTGACATT
CCCCGGAGGAGTCTTGGTGGGTTGCGGTGCCGGTTTTTTGAATGCCGTCA
AGATCAAAGGCTCACACACTGCCATTAAGTCGGGCATGGTTGCCGCTGAA
TCGATCTTCCAAATCCTCGATTCCTCCTCCGACCCGAACGCCCCGCCTAT
CCCTCATGAAGCGACCGCCTACCAAGACAGCATGGAGTCTTCTTGGGTCT
ACGAGGAGCTCAAGGCCGTCCGCAACGTCCACGCAGGTTTCAGTAAGGGG
CTAGCTCCGGGCCTTGCCTACGCGGGATTGGCCACCCACATCTTTAAAGG
GCGGGAGCCATGGACTTTCCACAACACCGTCTCAGACTCGGCAAAAAGCA
AGAAAGCCGCCGCCTGCACACCGATTCAGTACCCGAAAAACGACGGTCGA
TACACCTTTGATCTACTCACGAACCTGCAGCGGAGCGGAACCTACCACGA
AGGAGACCAACCCGCGCACTTGCGTGTAAAGAAAGATCTCACTGACGTGC
CTGGTCGGATTTCATACCCGGAGTATGCTGGTCCGGAGCAAAGGTTTTGT
CCGGCGGGGGTTTATGAGTATAAGGTCGAGGACGAAGGCGGGAAGGAGTC
TGCCGAGCTAATAATAAATGCTCAGAATTGCGTGCACTGCAAATGCTGCA
GGTAAGGCACCACAGGTTTGCCAGACTGGGCGAGCACAGGCTATTGAGAA
GAGTTTTCCTTCCTACCCATTGGTTTTATCCGAATCTCACGATGATTTTT
CTGAGCCTTGCGTATCCAATTTTTTAAACAGCATTAAAATGCCTGAGGAG
TACATCGAATGGAGCGTTCCCGAGGGAGGCGGTGGCCCGAGCTACACAGT
CATGTGAGGTCCGACCTCCAAGTTGCGGAAGCCGCCGAGGCCAAACCTCC
CCTCTGAAGCAAGGACTATTGTACAAGGGGCCCCCATTAATGCTTCGGCT
TTTCGGAGTCGAGCTGCAGGAATATAGTCGTTGAGCAGGGGACATTTTTG
TCGTGATGAGATCACATTAGGACACGTGAGGAAAAAGAAATGAAATTTTC
GAAAGAAACGCGAATACCGCCAATGTGCGCCGTTGC back to topprotein sequence of rna1420 >rna1420-protein ID=rna1420-protein|Name=rna1420|organism=Nannochloropsis gaditana|type=polypeptide|length=470bp
MAAPPPPPEPPQEGLWGRLSARIVRTTQSLLESKGEEDQGERRQTQYPPP
PPYGRDGLSSEGGRPPYPGAGAGPSSEQYTPPPARAGDPWRGPARSDGLY
PSAPGGPQGRHPDARHLPVPPPPPPSPFSPPSGSEGAVVQEQGFGDTRAH
LEGEEDLPDVFTVGDNMLLVRDPRGLREKIRSFAQAGSQSLEVLAAFEGG
LKPYRAPGGQRTESAEGLVHEAVLMAHTRATLDGLAGTLRRELEAATTEE
ERHAKQEEFTQKVHEIVAREGQVYLPALPRAVHDFASSVPLRTNLEQTLK
MLAFRGVPLTIFCPGYGDVVAHILASSAPGLAAHGGFLPPNLRLVSNFFR
AGPDGVAHGFSGPVVHALNMNMTTARHFRSGMMRGASVGMGGGELRSPSN
VFLLGGSLGDLKMASGGGMERQVISLGFLETGRDLVAQLPLFLEAYDVVI
MGDGGMQYANHLIGQVLGTG back to topmRNA from alignment at CM002457.1:595434..598218- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1420 ID=rna1420|Name=rna1420|organism=Nannochloropsis gaditana|type=mRNA|length=2785bp|location=Sequence derived from alignment at CM002457.1:595434..598218- (Nannochloropsis gaditana)
GAGGCACTAGGGGGAAGGCAAACCCTTAATTTGTCAGCCAGCCCCTCAAA
TACTGATGCAGGCTTCACATTATTATGCCGGCTTGATACATGCCAACAAA
ACGTACTTTTCACGGCCTCTGGTACCCTTTCATGCAGGGACGACCTCTCT
GAACGTTACGAGCGACAAGCAGGATGGTCGCATCCGGAGGGGTCGCAGCT
CCTTCAAGGAGAGAAAGAAGGTATCTGCCCCAAAAACATCCTTTTGCCGC
CATCACAATGCTTGCCGGAGGAGTCTTGAGCATGGTGCGGGCGGAAAATG
GATGGCAGCCGCAGCAGCAACAACATGGTCAATACCATCCCCCGCCTCCC
CCCCCTCCTCCGTCACGTAGCAGTGCACCTGCTCCGCCTTTTCATCAACA
GCAAGTAAGAACATCTCACATCTAGCCAGGGATTATTGCTTCAAGTGTGC
TTATTTCCATATTTTCGTCCTATTCCCTGGTCCATCCAGGGGAATCGGGG
TGGACAACCGCCTCCGGGTCGGGAGGGCTACCCCCCCGAGGTAAGTATTC
ATGTCGTGCGTCTCATTTCTACCGCTAGGGGATACCTGTGCATGCCGTGA
CGTCTGACTCGGCGCTTACCATCCCGATAGGGCTATTCTTGGCGGGGGCC
ATCACCAGTCGAGGGACTTCAGCGTCGCCAGGGCCAGTACCCCGACCAGT
TTCCGGAGCAGCAGCCACGCCCCGGCTCGTCCCCGCCACAGGAAGGCTTC
TGGTCCCGGCTGACGAATAAAATATTCGTAGGAGCGAACGAAGGGTATGT
GTCCTCAAACAAGTCCTTGGGTGTTGTGTGGGCGCCCTCACGTGCTCTCG
TGGCCCGTGCAGCACGCTTCCGGTGCCCCCATGCCCCCGCGACAAGTGGC
TCACAACCTCGACCCGATCGGTTACACCGGCAGGCAAGACAGCCAGGGTT
GGCAAGACGCGCGGCAGCAACCATCACAAAGACCTCTGTTCCCGCCCGCG
GCCTATCCCGGACAAGGCCCGCCCCCCCCCGCCCTGGCCTGCCCTCGACC
CCAGCGCAGCAACCGCAGTACCCTTCGCAGCCGCAGAAGCCGCAGCCAGG
TCCATCTCAGTACACAGACGCCCTAAGACCTCCATGGCAGCCCCCCCTCC
CCCCCCCGAGCCGCCCCAAGAGGGCCTGTGGGGGAGGCTCTCCGCGAGGA
TCGTTCGCACGACCCAAAGCCTGCTGGAGAGCAAGGGCGAAGAAGACCAA
GGCGAGCGGCGGCAGACGCAGTATCCTCCCCCGCCCCCCTACGGCAGGGA
CGGCCTGTCCAGCGAGGGTGGCCGACCTCCGTATCCAGGGGCCGGGGCCG
GACCCTCGAGCGAGCAGTACACGCCACCCCCGGCGCGGGCGGGTGACCCG
TGGCGCGGCCCCGCTCGCTCCGATGGCCTCTATCCCAGCGCGCCTGGAGG
GCCACAGGGGCGTCACCCAGATGCCCGCCATCTCCCAGTCCCGCCTCCCC
CTCCTCCTTCACCTTTCTCCCCTCCTTCCGGCAGCGAAGGCGCGGTGGTG
CAGGAGCAGGGCTTCGGGGACACGAGAGCCCATCTGGAGGGGGAGGAAGA
CCTGCCGGACGTGTTCACGGTGGGGGACAACATGCTCCTGGTCCGCGACC
CTCGGGGCCTCCGAGAGAAGATCCGGAGCTTTGCCCAGGCAGGCTCGCAG
AGCCTGGAGGTCCTGGCCGCTTTCGAGGGCGGTCTGAAGCCCTACAGGGC
GCCGGGCGGGCAGCGGACGGAGAGCGCCGAGGGCCTGGTGCACGAAGCAG
TGCTGATGGCCCATACCCGCGCCACGCTGGACGGGCTCGCGGGGACCCTG
CGCCGCGAGCTGGAGGCCGCGACGACGGAGGAGGAGCGGCATGCCAAGCA
GGAGGAATTCACGCAGAAGGTGCACGAGATCGTGGCCAGAGAGGGGCAAG
TATACCTTCCCGCCCTGCCGCGTGCCGTCCACGACTTTGCCAGCTCGGTG
CCCCTGCGCACAAACCTGGAACAGACGCTCAAGATGTTGGCCTTTCGCGG
AGTCCCCCTGACGATCTTCTGCCCCGGCTACGGTGACGTCGTGGCGCACA
TTCTGGCGTCGTCAGCCCCAGGTAGGGTGGGATGGGGATGTGGCAGTGGG
CGTCAGAGGGGCCTAAAAGAGTGGCTTGATCATATAAAATGAGCCAAAGT
AGGGCTTCTGGCAAGGATTTCTGACTGTGTCCATTCTACGCTCGTACAGG
TCTGGCGGCTCATGGCGGATTCCTTCCCCCAAATCTTCGCCTTGTCTCGA
ATTTTTTCCGTGCCGGACCCGACGGGGTGGCCCATGGCTTTTCGGGCCCC
GTGGTCCACGCTCTGAACATGAACATGACCACCGCCAGGCATTTTCGGTC
GGGGATGATGCGGGGCGCATCGGTAGGGATGGGGGGGGGAGAGCTGCGCT
CACCGTCAAACGTCTTCCTCCTTGGGGGTTCCCTTGGAGACTTGAAGATG
GCGAGCGGGGGGGGGATGGAGCGACAGGTAATATCGTTGGGCTTTCTTGA
GACAGGACGAGACCTCGTGGCGCAACTCCCTCTTTTCCTAGAGGCATACG
ATGTTGTCATCATGGGTGATGGAGGTATGCAGTATGCAAATCATTTGATT
GGGCAAGTGCTAGGCACCGGCTGAAGCAAAGCGAGCGGAGGCAGCAAATA
GGAGACCAAAAGGAGCCGTTTGGAGCCACAGCGCGAGGCAAGAGAATTCA
ACGAAAGTAAAAATAATGTTGGTCCCCGGCATGGA back to topCoding sequence (CDS) from alignment at CM002457.1:595434..598218- >rna1420 ID=rna1420|Name=rna1420|organism=Nannochloropsis gaditana|type=CDS|length=2826bp|location=Sequence derived from alignment at CM002457.1:595434..598218- (Nannochloropsis gaditana)
GTCTGGCGGCTCATGGCGGATTCCTTCCCCCAAATCTTCGCCTTGTCTCG
AATTTTTTCCGTGCCGGACCCGACGGGGTGGCCCATGGCTTTTCGGGCCC
CGTGGTCCACGCTCTGAACATGAACATGACCACCGCCAGGCATTTTCGGT
CGGGGATGATGCGGGGCGCATCGGTAGGGATGGGGGGGGGAGAGCTGCGC
TCACCGTCAAACGTCTTCCTCCTTGGGGGTTCCCTTGGAGACTTGAAGAT
GGCGAGCGGGGGGGGGATGGAGCGACAGGTAATATCGTTGGGCTTTCTTG
AGACAGGACGAGACCTCGTGGCGCAACTCCCTCTTTTCCTAGAGGCATAC
GATGTTGTCATCATGGGTGATGGAGGTATGCAGTATGCAAATCATTTGAT
TGGGCAAGTGCTAGGCACCGGCTGAATGGCAGCCCCCCCTCCCCCCCCCG
AGCCGCCCCAAGAGGGCCTGTGGGGGAGGCTCTCCGCGAGGATCGTTCGC
ACGACCCAAAGCCTGCTGGAGAGCAAGGGCGAAGAAGACCAAGGCGAGCG
GCGGCAGACGCAGTATCCTCCCCCGCCCCCCTACGGCAGGGACGGCCTGT
CCAGCGAGGGTGGCCGACCTCCGTATCCAGGGGCCGGGGCCGGACCCTCG
AGCGAGCAGTACACGCCACCCCCGGCGCGGGCGGGTGACCCGTGGCGCGG
CCCCGCTCGCTCCGATGGCCTCTATCCCAGCGCGCCTGGAGGGCCACAGG
GGCGTCACCCAGATGCCCGCCATCTCCCAGTCCCGCCTCCCCCTCCTCCT
TCACCTTTCTCCCCTCCTTCCGGCAGCGAAGGCGCGGTGGTGCAGGAGCA
GGGCTTCGGGGACACGAGAGCCCATCTGGAGGGGGAGGAAGACCTGCCGG
ACGTGTTCACGGTGGGGGACAACATGCTCCTGGTCCGCGACCCTCGGGGC
CTCCGAGAGAAGATCCGGAGCTTTGCCCAGGCAGGCTCGCAGAGCCTGGA
GGTCCTGGCCGCTTTCGAGGGCGGTCTGAAGCCCTACAGGGCGCCGGGCG
GGCAGCGGACGGAGAGCGCCGAGGGCCTGGTGCACGAAGCAGTGCTGATG
GCCCATACCCGCGCCACGCTGGACGGGCTCGCGGGGACCCTGCGCCGCGA
GCTGGAGGCCGCGACGACGGAGGAGGAGCGGCATGCCAAGCAGGAGGAAT
TCACGCAGAAGGTGCACGAGATCGTGGCCAGAGAGGGGCAAGTATACCTT
CCCGCCCTGCCGCGTGCCGTCCACGACTTTGCCAGCTCGGTGCCCCTGCG
CACAAACCTGGAACAGACGCTCAAGATGTTGGCCTTTCGCGGAGTCCCCC
TGACGATCTTCTGCCCCGGCTACGGTGACGTCGTGGCGCACATTCTGGCG
TCGTCAGCCCCAGGTCTGGCGGCTCATGGCGGATTCCTTCCCCCAAATCT
TCGCCTTGTCTCGAATTTTTTCCGTGCCGGACCCGACGGGGTGGCCCATG
GCTTTTCGGGCCCCGTGGTCCACGCTCTGAACATGAACATGACCACCGCC
AGGCATTTTCGGTCGGGGATGATGCGGGGCGCATCGGTAGGGATGGGGGG
GGGAGAGCTGCGCTCACCGTCAAACGTCTTCCTCCTTGGGGGTTCCCTTG
GAGACTTGAAGATGGCGAGCGGGGGGGGGATGGAGCGACAGGTAATATCG
TTGGGCTTTCTTGAGACAGGACGAGACCTCGTGGCGCAACTCCCTCTTTT
CCTAGAGGCATACGATGTTGTCATCATGGGTGATGGAGGTATGCAGTATG
CAAATCATTTGATTGGGCAAGTGCTAGGCACCGGCTGAATGGCAGCCCCC
CCTCCCCCCCCCGAGCCGCCCCAAGAGGGCCTGTGGGGGAGGCTCTCCGC
GAGGATCGTTCGCACGACCCAAAGCCTGCTGGAGAGCAAGGGCGAAGAAG
ACCAAGGCGAGCGGCGGCAGACGCAGTATCCTCCCCCGCCCCCCTACGGC
AGGGACGGCCTGTCCAGCGAGGGTGGCCGACCTCCGTATCCAGGGGCCGG
GGCCGGACCCTCGAGCGAGCAGTACACGCCACCCCCGGCGCGGGCGGGTG
ACCCGTGGCGCGGCCCCGCTCGCTCCGATGGCCTCTATCCCAGCGCGCCT
GGAGGGCCACAGGGGCGTCACCCAGATGCCCGCCATCTCCCAGTCCCGCC
TCCCCCTCCTCCTTCACCTTTCTCCCCTCCTTCCGGCAGCGAAGGCGCGG
TGGTGCAGGAGCAGGGCTTCGGGGACACGAGAGCCCATCTGGAGGGGGAG
GAAGACCTGCCGGACGTGTTCACGGTGGGGGACAACATGCTCCTGGTCCG
CGACCCTCGGGGCCTCCGAGAGAAGATCCGGAGCTTTGCCCAGGCAGGCT
CGCAGAGCCTGGAGGTCCTGGCCGCTTTCGAGGGCGGTCTGAAGCCCTAC
AGGGCGCCGGGCGGGCAGCGGACGGAGAGCGCCGAGGGCCTGGTGCACGA
AGCAGTGCTGATGGCCCATACCCGCGCCACGCTGGACGGGCTCGCGGGGA
CCCTGCGCCGCGAGCTGGAGGCCGCGACGACGGAGGAGGAGCGGCATGCC
AAGCAGGAGGAATTCACGCAGAAGGTGCACGAGATCGTGGCCAGAGAGGG
GCAAGTATACCTTCCCGCCCTGCCGCGTGCCGTCCACGACTTTGCCAGCT
CGGTGCCCCTGCGCACAAACCTGGAACAGACGCTCAAGATGTTGGCCTTT
CGCGGAGTCCCCCTGACGATCTTCTGCCCCGGCTACGGTGACGTCGTGGC
GCACATTCTGGCGTCGTCAGCCCCAG back to top
|