rna142, rna142 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna142
Unique Name	rna142
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3170
Alignment location	CM002455.1:365311..366699 -

Link to JBrowse

Properties


Property Name	Value
Product	solute carrier family 35 member b2
Orig transcript id	gnl\|cribi\|Naga_100013g82.9760.mrna
Orig protein id	gnl\|cribi\|Naga_100013g82.9760
Gene	SLC35B2
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:365311..366699 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
SLC35B2	gene136	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30472.1	cds142	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna142	rna142-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:365311..366699-
coding sequence from alignment at CM002455.1:365311..366699-

mRNA sequence

>rna142 ID=rna142|Name=rna142|organism=Nannochloropsis gaditana|type=mRNA|length=3170bp
AAATTTGCTCATTTTGTTACAGGCGTGCCTTTCCCCCCCTCAACTTCCCG
TTCCACTTGTTGCCCGCTGCTTCCCCCGCAAGTTTCTTTTGATGCGGAGG
GCAATAGTTCCGAAGCAAAGGAGTGCGCCGATGAAACTCTGCCATGCCAA
CGGGTGTGCAAACAAAGCGCACGACAAAATCATGCTGAGCATCTGACGTA
TTGTCATCATGATGGTGAAGACGATAGCACCAAACTGCTTAATTGTGTAA
AAGATGAAAAGCTGTCCCGAGGCAGAGCAAAGGGACAGAATGAAGACATG
CTGTGCGGCATCCGGGTGCCGCATCATGAAGGCGAGTGACGAAGCGCCTT
GCCCGGTTTGCAGAAGGCTCGCGCCTGTAAAGATGATAGAGCACAGGTTG
ACCCCCAGCATCATCTGGAATTGGGACACGTGGAACTTCTTGAAGACTTT
GTCTTGCCACTGGCTTGTAAAGGAGTCGCACATGAGATACATGGCCAGAA
GGATGTATCCTAACGTGGAGTCGGCCCCGCCGTCGTGCCCGGCCTTGGGC
TTCTTCTCGTTCAGAGAGAAGATGGTGACTCCCAACGTGATCAGCGCGGC
GTCCACGTACTCAGCCCACGGATAGGACCTCCGGTGCAGCAGCCTCCCAA
CGAGCATGACGGGGATGATCTTGCTGGACTTGGACAGGACCTGGGTGGGG
AAGGAGACGTATTTGAGGGCCTCGTATTGAGCCCAGCTGCTCAGAATGTT
GGAGAGGGAGGCAGGAGCATACTGCCACAAAGGGGCTTTCAAACCCTGGG
GTACCACCGCGTCTGTATTGGACCTATTCGACCATGGCCAGTAGACAATT
GTGGCGGAGACAACGAGGGCCAGGGCACGGTTACCGAACACCAAAAAGGC
CGACGAGGGGAAGAATTCCGCGTCAGCGCCCTCCCCGTACGCCTTGGTCA
CCATCCGCTCCTGGACCAGGCCCCAGATGATGTAAGAGGCTTGAAGGCCT
AAAAAGCAGCCCACGAGACGAATGGCTTTCGATTTCATGCTGTCGTCACC
GCTGGTGCTCCCACTCAGAAGCATCCTGGATGGAACTCCTCCAGGCTTTT
CTTTCTCATCCGTACTGTGGCTGCCACTGCCCGTAACGGGGGAGGACGCT
AACAATCGCTCTTTCTCAGATTCTCGCCCTGTCATACTCCCGTCTTCAAG
ACCAACGTCTTCCGAGACTTCTGTTTTCAGTTCGATTCCAGGAGTCCTCT
CGTCAGCCCTTGGAGAGAAACTGCTTCTCATGGCCGAAGACAAGGATGAA
AGCCAACCGCTTCCGGAACTTGCGCTGTTACGCACAGTTTTCCGCGTGAT
GACCGTTGTTGGTCTCGTTTTTCCTGTCCGTGCAGGTATTGATAAGGACC
AAGAAGAAGAGAAATCCGTCACGTACATTCCGTCCTACATTTGAATCGCC
AGTTCAAACAGTATGGCCTCCCTCAAGACAAAGAAGTCGACATTCACACG
CGCAAGACCTGCCGACTGTTCCAGCATGACACATCACGCGAAAAGACACA
ACAGTAAGCAGAAATGGGAGAGCTCTACCACGGCGTCTTGAATCCGCAGG
GACGGGACGTGAATGCGGCCGAGGCAGGTAGAAGCTCGGATGTAACTGAT
GCATCTCGCCAAGACGGTCCCGCCATCCACCTCCCCCCCTAAGCCCCTGC
TCTGGGAAAAAACCATTAACCTCCATTCACCAATACCCCTGCCAGCGGGT
TGTGGACAGTGGAAAACCATGTTGATTGATGCGGTGTAGTGGACTGAGTT
GTGAGTCGCTTTCAATACCTTACAGGCGCGCTTAATTTGCACATGGCCGC
AATTATCGGGGGATCGTGGCGTTTGGAGCTCCACCAGCGCAGCCGGCTCC
TGAGTTTCTTTTTATTTGTTTCCCTTTTCTTACCTGTTACCGTCGAAGCC
TTCACTGCACGGATCCATGGATGTCCAACGATGTCCTCCTTAAATCGACC
GAAAGCTTCTGGAGGCAGCAGTGACAGTCGGAGAGGCGGTACCCGCTCCT
CCTTCTCAACCGCCAATGCCAAGCCCTCTTCTTGGCAACGTCCTCGCTCC
TCTTCAAGCCCTCCTTTTACATACCCCATCCCGCAAAAAAACCCGTTTCC
ATGGAAAGCAGCCCAGTCTCCCCCTCCAACACCAACGCGCCTCACTCCCA
AATCAAGCTTGCCTCCTGCTGTAGATGTTGGTGCACGGGATCAAATCTAC
GAGCCGTCCCTGCTCCCCCCAAGAAAAAAACCTACCACACTACTTATTTC
GGATCGGAAGCGTGGTCTGTGGGTTTTCGAACAACCATTTGTCCTTGGTG
TCGTGGACGTGAAAAATCGGATGAGCGTCCTTCGCCTTTCAGACGGCGGT
TTCGCACTCTATTCTCCCCTGGCTGCCACACCGGAATGCATCGACATGCT
TAAAAGCCTGGTCAAAAGCGAAAAACTCTCTCTGTCTTCAGCGTGGTTCA
TGGTGCCCAGCTCCTTTCCCGAACATCACGAGTCCCTTGTGACGTGGCGG
GAGGTGTTTCCTGAGGCACGAGTCGTCTCGGTACATCCCCGGATAAATGT
CATTTCCGAGTTTCTTCTGGAAGGCCCGTCAACCGACGCCCCATCTCAAT
TACCTTTCCCGCTGCGTAAAGATTTGGACGTGGCGGTTTACGAGACGCCC
TTACTGCGGGAGATGGTCCTGACTCACAAGCCCAGCAAGACTCTTTTCGT
GGCCGACTCGGGGTTTTACATCAACGAGGAGTACTCCAATTCTCTGACAC
GCGGCATCACGCAGCTGCAAGGGATCTACGACAGGTTTGTCACCCCTCCC
TTTTTCCGGCTGGGCATGAACAAGAAGGAAGGAAAGAGGCTGTACGAGCG
TGTGAAGGACTGGGGATTCGACAAGATCGTCACGTGCCACGCGGCCTTGG
TGGAGGAGGGGAAGGGGAAAGAGGCATTTTTGGAAGGCTACCGACACCTG
GCTTAATTTCTCGCTGCGTGGTGCAGATAAAATATTCAAAAGGATGCGTA
GAAGGAGCCCGTGGCAGTAGCCGCGTCGGGCGGGCCACACTTGTTTGCAA
GCCTTTCAGATAACTGTGCGAGTATCATAAAAAGCAACCAAGCATGACTG
TAACATACTCAAAGAAGGAC

protein sequence of rna142

>rna142-protein ID=rna142-protein|Name=rna142|organism=Nannochloropsis gaditana|type=polypeptide|length=462bp
MYVTDFSSSWSLSIPARTGKTRPTTVITRKTVRNSASSGSGWLSSLSSAM
RSSFSPRADERTPGIELKTEVSEDVGLEDGSMTGRESEKERLLASSPVTG
SGSHSTDEKEKPGGVPSRMLLSGSTSGDDSMKSKAIRLVGCFLGLQASYI
IWGLVQERMVTKAYGEGADAEFFPSSAFLVFGNRALALVVSATIVYWPWS
NRSNTDAVVPQGLKAPLWQYAPASLSNILSSWAQYEALKYVSFPTQVLSK
SSKIIPVMLVGRLLHRRSYPWAEYVDAALITLGVTIFSLNEKKPKAGHDG
GADSTLGYILLAMYLMCDSFTSQWQDKVFKKFHVSQFQMMLGVNLCSIIF
TGASLLQTGQGASSLAFMMRHPDAAQHVFILSLCSASGQLFIFYTIKQFG
AIVFTIMMTIRQMLSMILSCALFAHPLAWQSFIGALLCFGTIALRIKRNL
RGKQRATSGTGS

mRNA from alignment at CM002455.1:365311..366699-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna142 ID=rna142|Name=rna142|organism=Nannochloropsis gaditana|type=mRNA|length=1389bp|location=Sequence derived from alignment at CM002455.1:365311..366699- (Nannochloropsis gaditana)
ATGTACGTGACGGATTTCTCTTCTTCTTGGTCCTTATCAATACCTGCACG
GACAGGAAAAACGAGACCAACAACGGTCATCACGCGGAAAACTGTGCGTA
ACAGCGCAAGTTCCGGAAGCGGTTGGCTTTCATCCTTGTCTTCGGCCATG
AGAAGCAGTTTCTCTCCAAGGGCTGACGAGAGGACTCCTGGAATCGAACT
GAAAACAGAAGTCTCGGAAGACGTTGGTCTTGAAGACGGGAGTATGACAG
GGCGAGAATCTGAGAAAGAGCGATTGTTAGCGTCCTCCCCCGTTACGGGC
AGTGGCAGCCACAGTACGGATGAGAAAGAAAAGCCTGGAGGAGTTCCATC
CAGGATGCTTCTGAGTGGGAGCACCAGCGGTGACGACAGCATGAAATCGA
AAGCCATTCGTCTCGTGGGCTGCTTTTTAGGCCTTCAAGCCTCTTACATC
ATCTGGGGCCTGGTCCAGGAGCGGATGGTGACCAAGGCGTACGGGGAGGG
CGCTGACGCGGAATTCTTCCCCTCGTCGGCCTTTTTGGTGTTCGGTAACC
GTGCCCTGGCCCTCGTTGTCTCCGCCACAATTGTCTACTGGCCATGGTCG
AATAGGTCCAATACAGACGCGGTGGTACCCCAGGGTTTGAAAGCCCCTTT
GTGGCAGTATGCTCCTGCCTCCCTCTCCAACATTCTGAGCAGCTGGGCTC
AATACGAGGCCCTCAAATACGTCTCCTTCCCCACCCAGGTCCTGTCCAAG
TCCAGCAAGATCATCCCCGTCATGCTCGTTGGGAGGCTGCTGCACCGGAG
GTCCTATCCGTGGGCTGAGTACGTGGACGCCGCGCTGATCACGTTGGGAG
TCACCATCTTCTCTCTGAACGAGAAGAAGCCCAAGGCCGGGCACGACGGC
GGGGCCGACTCCACGTTAGGATACATCCTTCTGGCCATGTATCTCATGTG
CGACTCCTTTACAAGCCAGTGGCAAGACAAAGTCTTCAAGAAGTTCCACG
TGTCCCAATTCCAGATGATGCTGGGGGTCAACCTGTGCTCTATCATCTTT
ACAGGCGCGAGCCTTCTGCAAACCGGGCAAGGCGCTTCGTCACTCGCCTT
CATGATGCGGCACCCGGATGCCGCACAGCATGTCTTCATTCTGTCCCTTT
GCTCTGCCTCGGGACAGCTTTTCATCTTTTACACAATTAAGCAGTTTGGT
GCTATCGTCTTCACCATCATGATGACAATACGTCAGATGCTCAGCATGAT
TTTGTCGTGCGCTTTGTTTGCACACCCGTTGGCATGGCAGAGTTTCATCG
GCGCACTCCTTTGCTTCGGAACTATTGCCCTCCGCATCAAAAGAAACTTG
CGGGGGAAGCAGCGGGCAACAAGTGGAACGGGAAGTTGA

Coding sequence (CDS) from alignment at CM002455.1:365311..366699-

>rna142 ID=rna142|Name=rna142|organism=Nannochloropsis gaditana|type=CDS|length=1389bp|location=Sequence derived from alignment at CM002455.1:365311..366699- (Nannochloropsis gaditana)
ATGTACGTGACGGATTTCTCTTCTTCTTGGTCCTTATCAATACCTGCACG
GACAGGAAAAACGAGACCAACAACGGTCATCACGCGGAAAACTGTGCGTA
ACAGCGCAAGTTCCGGAAGCGGTTGGCTTTCATCCTTGTCTTCGGCCATG
AGAAGCAGTTTCTCTCCAAGGGCTGACGAGAGGACTCCTGGAATCGAACT
GAAAACAGAAGTCTCGGAAGACGTTGGTCTTGAAGACGGGAGTATGACAG
GGCGAGAATCTGAGAAAGAGCGATTGTTAGCGTCCTCCCCCGTTACGGGC
AGTGGCAGCCACAGTACGGATGAGAAAGAAAAGCCTGGAGGAGTTCCATC
CAGGATGCTTCTGAGTGGGAGCACCAGCGGTGACGACAGCATGAAATCGA
AAGCCATTCGTCTCGTGGGCTGCTTTTTAGGCCTTCAAGCCTCTTACATC
ATCTGGGGCCTGGTCCAGGAGCGGATGGTGACCAAGGCGTACGGGGAGGG
CGCTGACGCGGAATTCTTCCCCTCGTCGGCCTTTTTGGTGTTCGGTAACC
GTGCCCTGGCCCTCGTTGTCTCCGCCACAATTGTCTACTGGCCATGGTCG
AATAGGTCCAATACAGACGCGGTGGTACCCCAGGGTTTGAAAGCCCCTTT
GTGGCAGTATGCTCCTGCCTCCCTCTCCAACATTCTGAGCAGCTGGGCTC
AATACGAGGCCCTCAAATACGTCTCCTTCCCCACCCAGGTCCTGTCCAAG
TCCAGCAAGATCATCCCCGTCATGCTCGTTGGGAGGCTGCTGCACCGGAG
GTCCTATCCGTGGGCTGAGTACGTGGACGCCGCGCTGATCACGTTGGGAG
TCACCATCTTCTCTCTGAACGAGAAGAAGCCCAAGGCCGGGCACGACGGC
GGGGCCGACTCCACGTTAGGATACATCCTTCTGGCCATGTATCTCATGTG
CGACTCCTTTACAAGCCAGTGGCAAGACAAAGTCTTCAAGAAGTTCCACG
TGTCCCAATTCCAGATGATGCTGGGGGTCAACCTGTGCTCTATCATCTTT
ACAGGCGCGAGCCTTCTGCAAACCGGGCAAGGCGCTTCGTCACTCGCCTT
CATGATGCGGCACCCGGATGCCGCACAGCATGTCTTCATTCTGTCCCTTT
GCTCTGCCTCGGGACAGCTTTTCATCTTTTACACAATTAAGCAGTTTGGT
GCTATCGTCTTCACCATCATGATGACAATACGTCAGATGCTCAGCATGAT
TTTGTCGTGCGCTTTGTTTGCACACCCGTTGGCATGGCAGAGTTTCATCG
GCGCACTCCTTTGCTTCGGAACTATTGCCCTCCGCATCAAAAGAAACTTG
CGGGGGAAGCAGCGGGCAACAAGTGGAACGGGAAGTTGA

Synonyms

Publications