rna1417, rna1417 (mRNA) Nannochloropsis gaditana

Overview
Namerna1417
Unique Namerna1417
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1968
Alignment locationCM002457.1:584733..586478 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100029g8.9518.mrna
Orig protein idgnl|cribi|Naga_100029g8.9518
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:584733..586478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100029g8gene1368Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1417rna1417-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29261.1cds1415Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1417 ID=rna1417|Name=rna1417|organism=Nannochloropsis gaditana|type=mRNA|length=1968bp
GGCATGTCTACCTAGTTACCAGAGTCTGAGATGGGCGAGGCAGGCCCATG
CACTCCCCGCGAGGAACGTTGATGATCGCGGCGACGGCCCTGGTGGCTGC
ACTGAAGCTAAACCCCCGTAAAGCTCAATGAAAGCCTTGATCGCGTACAT
CTCATGACACAGAGAGAGCTGTGATTGTCCATGACCCGGAGCGCACCCTG
CCTTCCCCTTTTCGCGTTCTTCGTGCTACTTGTACCCTCAGTCGCGGCCT
TCCTCCGACCTCCCCGCAGTCGCTCGACCCGGCCACGGGCACTTCACTCT
CGGGAACCGGCGCGGGATTTGTACACCACATCTTTGTTTGAGAACCCTTC
AGAGGATCCTCTGCTTCAAGAGAAATATTGGGAAGATCTTTTTATGCAAG
GGAGCGCGGCCAGAGGAGAGTCTCCGTCCACGGAAGGCACGGGCCCTGAG
GAGGCCGTTGGGGTCGACGTCGTGAGTTTTGATTTAGACGATACATTGTG
GTGCGGAAAAACAGTCATCAGCAATGCCAACAAGGCGCTGCAAGCTTTCC
TTCAAGCAAATTATCCCGCCATGGTCTCCGACGAGCTGCCCACCGTCTCT
GCACTCATGTGGGTGCTTGCCAAAAAGCACCCTGAGGAGTTTTTGGAGGA
TCCGGAGGACAGCAAGTCGGTCGTTCGGTTCACCGACCTCCGCAAGTTGG
CCCTCACTGCTCTGGCGAAAAAATGCGACATGCCCGAGCCCCAAGCTGTT
GCCGAAGCGGCCTTTCAGGCCTGGCATGACGCTCGACACGACGTCCAGGA
GCTTTTCTTTCCAGGTGCGTTAGACTTGCTCCAGGAATTGAAAGCCCGTG
GCCTTCGCCTCTGTGCCATCACGAACGGCAACTGCGACATCTCTCGGATC
GCAGCCTTCGAGGGTGAGTGTCGACGCAATGCCCGTTATGTTTCACCACA
CCTGCTGCTTTGCGAAAATTATATCTCACATACTGCATCTTTCGCACCCT
GTCCTCTGTCCTCGTACACCTCAGGCGTTTTCGAGTTTTGCATCAACGCC
GAGAAGGTCGGGGCCCGGAAGCGGACGGGCAGGCCCTATATGGCGGCCAT
CCAGCAGGCAGGGGTGGGAGAGGGGGTGGGGAAGCGGTGGGTGCATATCG
GTGACGACTTTTCCGAGGACATACTAGCGGCCAAAAGTGACTTCAAGCTT
CGCACTATCTGGTACCACACGGCGGAGCGGAAAGCGAAGGTGGAGGAGGA
GCAACTGGCAGCTAAACGGGCGAGATTGGAAGCGCAAGAAAAAGAGAGCA
AGGATAGTAGCAGGACTTCAGCAGAGGACGGAGCGGTAGGGCCTCTGAAG
CTTTCTTCGTTGGCGTCCTCGTTCAAGACGTCGACAGAGCCATTTTTCAA
GGACAAGGCCGCAGTGCACGTAAACACCATGGAAACAGATGACTACCTGA
CGCATTTCATCACAAAGGAATTTGTCGACGGTGAGGTTGAAGATTTGAAG
GAAATCGTACCGCTCATTGACAATTGGGTACGGCAGGGCAAGCAAAGGCC
CCCAAAGAAGAAAGCTGTGGGGGGTACGGGAAGTACTAGTGATACCTCGA
GCGGTGTGGACTGTATCGAAGCACCTCAAGACAAGGAGGAAAGCAAATTC
TGTATTGCGTGCCGCGCGATACTTCCTGTACGGGCTAAGTTCTGTTCCGC
TTGTGGCGAGAAGCAAGAGTGATCAGAGCTGTAAGCTTGAAATCAAATGA
CTGTGATCGAATATGTCATAAATGTGTTGCTGTACAATATTTGCGTTCAA
GAGACCAATGCAAAACAGGCCGCTTAACGGAGCCCACTATCTATTAGCTT
TCTATTTATGTACAAAGTGCTTTACTTCACAATGGTGTTCGAAGTGATAC
CGCATGTCAGCTTCTCGTAAAAAGTCCAAGAAAGAACGACAGAAGGGCTA
TCACCAGTACATTTCGGA
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protein sequence of rna1417

>rna1417-protein ID=rna1417-protein|Name=rna1417|organism=Nannochloropsis gaditana|type=polypeptide|length=240bp
MWSGNYWRGSQLIRGRISLRRQKMMQTPQKLHLHLRPKQRKRPSSTFVTR
YAGSPFFIGGMLHLKRPFFHLCRSLIIGSDMTSSFLIRCVIKSWMPFIGH
SRFSCFITTQIALTLERDELVRSLDVTTFELRWELSSQCLRGQSGHEAME
CPSSLHESRSLNSLKASFVRSIIRVLGIASGGDPSSVSQVFQCSSPNTNT
VFGRERLFEPILATFRTPMVFRNVLVIALLSFFLGLFTRS
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mRNA from alignment at CM002457.1:584733..586478-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1417 ID=rna1417|Name=rna1417|organism=Nannochloropsis gaditana|type=mRNA|length=1746bp|location=Sequence derived from alignment at CM002457.1:584733..586478- (Nannochloropsis gaditana)
ACGCTGGAAGGTATGGCTACCGGCCGCTCTTCTCCAGCAACACTTTTGCA
GCCACCGCAGGTACGTTTTTCGGACTAGCGGGATACATCCATGCAATGAT
TTTTGATGTTGAATCGACCCTTTTCGCTACCTGTTGAGGATTTGAAACCT
TTCCTGTTCTCTCATCAATCATTGCTTTGCCCCGATTTTCCGCGGGATCT
TCAATACGATCAAGCATTATTCTGATTTCCTCAATTATTAATCTGCACCT
GGTAGCTCTCCATCAGTCCATCGAAATGTCAAATAGTGCTTAATGGTGCT
TCATCCCAAAATGTGTCGTCCACCGCCCATCTAACCCTTATCAACTTGTC
GCGAGCTCCGGGAGGGGTCGCATTTAAGGTACAAACTACAAAGCCTAAAC
GTTACGTCGTCCGACCCAATCAAGGCCTGATTGGACCCGGCGAGCGTTTA
GTCGTCGAAATTTGGATACCACCACATCAAAAGACGGGAGCAGTAGAAGA
GTACAATAAATCAGGCGGGAATCATATGAAAGACAAGTTTAAGGTGGTCT
ATATGCAAATCCAAGACGTGAAGAATATGGAAGTAGCGGATGTCAAGTCG
ATGGAAGTGGTAAGAAGTGTGAGAGCTGTTGAGAAATAATTCCATTGCCT
TGGTTATGCTATTACATCATTCTTCTAGATTCAGTTTGGCATTCAGAGGA
TACCAGTCTTACGCTTCATAATTTAACAGACAGAGCACCTACATCATTTG
TGGGAGCAAGCGGATAGAAAAGGGATCTTTAGCCATAAATTTGATGTGGA
GTGGAAATTATTGGAGGGGGTCTCAGCTCATTCGAGGGAGAATCAGTCTT
CGTCGCCAAAAAATGATGCAAACACCGCAAAAGCTCCATCTCCATCTGCG
GCCGAAACAGAGGAAGAGGCCTTCTTCTACCTTCGTGACGAGGTACGCAG
GAAGCCCGTTTTTCATTGGTGGGATGCTTCATTTAAAACGCCCCTTTTTC
CATTTGTGCAGATCCTTGATTATCGGCAGCGATATGACGAGCTCGTTTCT
GATACGGTGCGTAATAAAGTCGTGGATGCCTTTCATCGGGCACTCAAGGT
TCTCTTGCTTTATCACCACGCAGATCGCACTGACACTAGAGCGCGATGAA
TTGGTCAGATCACTCGATGTAACTACGTTCGAGTTGCGATGGGAACTTTC
TAGTCAGTGTTTACGGGGTCAATCCGGCCATGAGGCAATGGAGTGTCCAT
CGAGCTTGCACGAGAGCCGCAGGTCGGTTTGGTGGAGCACAAAGATGTAA
CATAACGAGGATTAAATAAATGATCTAAAGGTCTTTTCTCATTCCAAACG
TTACAAAAACAGCTTAAACAGTCTAAAGGCGTCCTTCGTGCGTTCCATAA
TCCGAGTTTTAGGAATTGCTTCGGGAGGTGATCCCTCCTCCGTGTCTCAA
GTCTTCCAATGCTCAAGCCCCAATACTAATACTGTTTTTGGTCGGGAGCG
TTTATTTGAGCCAATATTGGCAACATTTCGGACACCAATGGTTTTCCGAA
ATGTACTGGTGATAGCCCTTCTGTCGTTCTTTCTTGGACTTTTTACGAGA
AGCTGACATGCGGTATCACTTCGAACACCATTGTGAAGTAAAGCACTTTG
TACATAAATAGAAAGCTAATAGATAGTGGGCTCCGTTAAGCGGCCTGTTT
TGCATTGGTCTCTTGAACGCAAATATTGTACAGCAACACATTTATG
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Coding sequence (CDS) from alignment at CM002457.1:584733..586478-

>rna1417 ID=rna1417|Name=rna1417|organism=Nannochloropsis gaditana|type=CDS|length=1446bp|location=Sequence derived from alignment at CM002457.1:584733..586478- (Nannochloropsis gaditana)
CTTAAACAGTCTAAAGGCGTCCTTCGTGCGTTCCATAATCCGAGTTTTAG
GAATTGCTTCGGGAGGTGATCCCTCCTCCGTGTCTCAAGTCTTCCAATGC
TCAAGCCCCAATACTAATACTGTTTTTGGTCGGGAGCGTTTATTTGAGCC
AATATTGGCAACATTTCGGACACCAATGGTTTTCCGAAATGTACTGGTGA
TAGCCCTTCTGTCGTTCTTTCTTGGACTTTTTACGAGAAGCTGAATGTGG
AGTGGAAATTATTGGAGGGGGTCTCAGCTCATTCGAGGGAGAATCAGTCT
TCGTCGCCAAAAAATGATGCAAACACCGCAAAAGCTCCATCTCCATCTGC
GGCCGAAACAGAGGAAGAGGCCTTCTTCTACCTTCGTGACGAGGTACGCA
GGAAGCCCGTTTTTCATTGGTGGGATGCTTCATTTAAAACGCCCCTTTTT
CCATTTGTGCAGATCCTTGATTATCGGCAGCGATATGACGAGCTCGTTTC
TGATACGGTGCGTAATAAAGTCGTGGATGCCTTTCATCGGGCACTCAAGG
TTCTCTTGCTTTATCACCACGCAGATCGCACTGACACTAGAGCGCGATGA
ATTGGTCAGATCACTCGATGTAACTACGTTCGAGTTGCGATGGGAACTTT
CTAGTCAGTGTTTACGGGGTCAATCCGGCCATGAGGCAATGGAGTGTCCA
TCGAGCTTGCACGAGAGCCGCAGCTTAAACAGTCTAAAGGCGTCCTTCGT
GCGTTCCATAATCCGAGTTTTAGGAATTGCTTCGGGAGGTGATCCCTCCT
CCGTGTCTCAAGTCTTCCAATGCTCAAGCCCCAATACTAATACTGTTTTT
GGTCGGGAGCGTTTATTTGAGCCAATATTGGCAACATTTCGGACACCAAT
GGTTTTCCGAAATGTACTGGTGATAGCCCTTCTGTCGTTCTTTCTTGGAC
TTTTTACGAGAAGCTGAATGTGGAGTGGAAATTATTGGAGGGGGTCTCAG
CTCATTCGAGGGAGAATCAGTCTTCGTCGCCAAAAAATGATGCAAACACC
GCAAAAGCTCCATCTCCATCTGCGGCCGAAACAGAGGAAGAGGCCTTCTT
CTACCTTCGTGACGAGGTACGCAGGAAGCCCGTTTTTCATTGGTGGGATG
CTTCATTTAAAACGCCCCTTTTTCCATTTGTGCAGATCCTTGATTATCGG
CAGCGATATGACGAGCTCGTTTCTGATACGGTGCGTAATAAAGTCGTGGA
TGCCTTTCATCGGGCACTCAAGGTTCTCTTGCTTTATCACCACGCAGATC
GCACTGACACTAGAGCGCGATGAATTGGTCAGATCACTCGATGTAACTAC
GTTCGAGTTGCGATGGGAACTTTCTAGTCAGTGTTTACGGGGTCAATCCG
GCCATGAGGCAATGGAGTGTCCATCGAGCTTGCACGAGAGCCGCAG
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Synonyms
Publications