rna1411, rna1411 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1411
Unique Name	rna1411
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2007
Alignment location	CM002457.1:572351..574162 -

Link to JBrowse

Properties


Property Name	Value
Product	chaperone protein
Orig transcript id	gnl\|cribi\|Naga_100029g14.9539.mrna
Orig protein id	gnl\|cribi\|Naga_100029g14.9539
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:572351..574162 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100029g14	gene1362	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29282.1	cds1409	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1411	rna1411-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:572351..574162-
coding sequence from alignment at CM002457.1:572351..574162-

mRNA sequence

>rna1411 ID=rna1411|Name=rna1411|organism=Nannochloropsis gaditana|type=mRNA|length=2007bp
TCACAGTTGCGTCATACATAAGCCATCCTACTTCTCATGAAGCACCGCGG
AAATTCCATAGACTTGAGCCTTCCAGGGAGCGCGCCATAGCAAGCAGCAC
GGTTCAAAGCTAACCTCCCCCCCGCCCCACTGCATTCCTGTACAGCACAA
GCCTGGACTCGCAGCTTACACTCCAGTCGAATGACAACGCGATATTACTA
GAGCATAGCACTATGGAAGGAGAAGAGCAAGTATGCGCAGGTGCTGGGGG
CACGAGTGCGGAGAATGTGACGACCGACGAGGCTGTCATCTCGCCAGATG
TGCAAGTTGGTGCACCGCCTCCGGCCACTCCCGCCAATCCGGTGGAATAT
CAGGAAACTTGCCCAGCTGAAGGTACTGATGAGGTGCTAGAAGATAAAAA
GCCAGCCACCACGGCCGGTGCCGTCTCCGAAGCCGTCACCGGGCGCCTCA
CTCCATCGACACAACGATACGTCCTCCACGGGACCCTGATTGGGCTTTTC
GTTGTCGTAGACCCTGCTATACAATGGTTGGTACAAAGAGGGACACAGAG
GCTATGACTGCTGATGCGCGTTTACGTTTATTTCTCAGCTCGAGTCCCCA
TATCGACTGTTGACGCCTTCATTTCTCCCCGTCAGTGCGAAGATGAGTGT
AAAGCGGGAGCTCGAAACGCTGGGCGTCTTTCAAAGGGACGTGGGCCCGA
CGGAGGAGGTACAGCTCTCTCTCGAGCAGGCCTTCTATCTGGTATATGAC
CTCGACCGCCTCCGCGTCTGCCTGCCACCGGGCGACGGTCGATGGAGGGG
ATTTGGGGAGAAAAAAGAAGTGGAAGGGGGTTATATTGAAGAGTCGCGAG
GCCTGGGAGCAGAGGCGGCGGCCGATGAGAGGGGGGACAAAGGAGCGGTT
GGAGATGGGCAGGCGCAGGCAAGGCCCTTGAGTGCGATCGAGTGCTGGAA
AGCGTACGTATCTTTTGGCATTGCAAAATATACATCTACACGTGTGTATA
TAAGTGATTTGCCATCATGCCCACCTTGATCCCTTGCGTCTCCTTTCTTC
AGCTTTCGGGCCGCCAGTCCCACCTTCCTCAGGAGTGTGGGTAGCTACCG
GTTCTTCAGGAAGCGCGGCTTCGTCGTCCACGGAGGCCTGAACCTGGGTC
TGGACTTCATGCTCTACCGAGGCACCCCACAGCGCTACCACGCCGAGTTC
GGTGTCCTGCTCCGGTATCCATCCTCATCCCCACCCGGCCATCGGGACGG
CGAGGGAGCCGGAGACGGGGGGCGTCGGTTGACCTGGCGGGACCTGCACC
TCCTCTACCGGCTCATTGGGGTCAGTGCCGGCGTATGCCTTCCTGTTCAT
TTCAACTCGGGCAGCTGCCTATGGTCAGCCGTCGCGGCATTTTTTCTGTC
GTGTCGTATTATCCCCAGCCTTCGCTCACGCCTCGCCCCCCCTCCCCCAC
ACAAAGGAGGTGCGCAAGACGTTGATCCTCGGCCATATCCGATTGGGTCG
GGCGGACGAGGGAGAGGATGGGGGGGGGCTGCGACCGGCGGGGGGGGCCG
GGGCCAGTCGGGCTGAGGGAGAAGATGGCAGTAGCGAGGTGGGCCGTGGG
GATCAGGGGGCGGAACGAGGCGAGGAAGAGGGGGAGGAGGAGGATTGCGA
GGTGCGTCGCGAGATAAGACAGTGGTACAGTGGGTTAAGTGTATATGAGG
TGGCAGTGACGCCGTGGCGGGGGGGAACCCCGCTAGCCCGATCGAAGCTC
AGCAAAAAGAAAAGCGAGGCTGCTCAGATCAAGGGGGGGGCGGGTGGGGG
GGCTGGCAGTGGGAAGAAGAGAAGAAGGGGAGGGGGGGAAGGTGGGCGAG
AGAGTGCGGCGAGTGGCGAGAAGCATGTGAATAGGCAGCAGAATGCGTGA
CAACAAAGGCAAAGCATTTCGGAAAGGTTTCAAGAAGACGGCTGCTCTTT
TTCAAGTGTGTACTTTCAGCCACCCACTTTTGACCAGTACCAGACGCATT
ATTCGAC

protein sequence of rna1411

>rna1411-protein ID=rna1411-protein|Name=rna1411|organism=Nannochloropsis gaditana|type=polypeptide|length=539bp
MRAALSLSHKLRDARLHSVALSTAPSATIAFAYAQDTSPRSRPCCMRRPP
RTRQDARRCFRATCRRENPVLIGIGILVGATLAHYLVRAAQRIAKADKKK
REGKEVTDDEEEERDHEESEGREEAGANVRREFPVLGLDLGSSQACVAFV
AAKERAPEVVENHEGRRSTPAFISYEDDHLVVGQLARRARWREPAKVGFN
IQRLLGLAAYEDKVRPLFPFAVDAREGSADGDLSPLVMRLKGGRALTPLE
ASARVLEELVQSAEHKLHTTPGFAILAVPSYFDEGAKRRALKAAADATGL
SVGADEGQGGGLAVVEDAVAALVCAHYSGAVSDEEAFFGKPWLVLDVGGL
NAQASVVAMDPQQGLGVRANRTTWAVGGEQLDGVLVQHLISDFKEKHGGL
DLGTDYLALERLHEAAEASKQELSLSPSSTLRLPFITADHRGPKHLDATV
SRAALERLALPVLDQLEAPVVEALRASGVGLEGLQGVLLAGGTARLPFLG
EFVRSRLTLGKVKVLSVEGVPPEEVAAVGAAYYGRQLVE

mRNA from alignment at CM002457.1:572351..574162-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1411 ID=rna1411|Name=rna1411|organism=Nannochloropsis gaditana|type=mRNA|length=1812bp|location=Sequence derived from alignment at CM002457.1:572351..574162- (Nannochloropsis gaditana)
GGGAACAATCACACAACTTAAAGGACAGCCATAGGGCAATTCATGCGGGC
GGCGCTTTCTTTGTCCCACAAATTGCGTGATGCTCGCCTCCACTCCGTTG
CCCTCTCCACCGCTCCGTCCGCAACTATCGCCTTTGCCTATGCCCAAGAC
ACTTCGCCCCGCAGCCGCCCTTGCTGCATGAGGCGGCCTCCTCGGACCCG
GCAAGATGCGCGACGGTGCTTTCGTGCGACGTGCCGGAGGGAGAATCCTG
TGCTCATCGGTATTGGTATACTTGTAGGGGCGACACTTGCCCATTACCTA
GTACGGGCGGCGCAACGGATAGCCAAGGCAGACAAGAAAAAGAGAGAAGG
CAAAGAGGTCACTGACGACGAGGAGGAGGAGAGGGATCACGAGGAAAGTG
AAGGGCGAGAGGAAGCGGGCGCGAACGTCAGGCGTGAGTTTCCGGTCCTG
GGACTAGACCTGGGATCTTCGCAGGCATGCGTGGCTTTCGTGGCTGCGAA
AGAACGAGCGCCAGAGGTGGTGGAGAATCATGAAGGCCGACGGTCTACTC
CTGCGTTCATATCCTATGAAGATGATCACCTGGTGGTAGGACAGCTGGCT
CGCCGAGCACGATGGAGGGAGCCCGCGAAGGTGGGCTTCAACATCCAGCG
CCTGCTGGGCCTGGCCGCTTACGAGGACAAAGTCCGGCCTTTGTTCCCCT
TCGCCGTCGACGCCAGGGAAGGATCTGCGGACGGGGACCTCTCTCCGTTG
GTCATGAGGCTCAAGGGGGGGCGAGCCCTGACGCCCCTGGAAGCGAGCGC
GCGGGTCCTTGAGGAGCTCGTGCAGTCCGCGGAGCACAAACTGCACACCA
CCCCGGGTTTCGCCATCCTCGCAGTCCCCTCCTACTTCGATGAAGGGGCG
AAGCGTCGGGCGCTGAAGGCGGCCGCCGATGCGACGGGTCTGAGCGTTGG
GGCGGACGAGGGGCAGGGCGGGGGCCTGGCGGTGGTGGAGGACGCGGTGG
CAGCCCTGGTCTGCGCCCACTACTCGGGGGCCGTCTCGGACGAAGAGGCC
TTCTTCGGGAAGCCCTGGCTGGTGCTGGATGTGGGGGGCCTGAACGCGCA
GGCCTCGGTGGTGGCCATGGACCCCCAGCAGGGGCTGGGCGTGCGGGCCA
ACAGGACGACGTGGGCTGTGGGCGGGGAGCAGCTAGACGGGGTGCTGGTG
CAGCACCTCATCTCCGACTTCAAGGAGAAGCACGGCGGCCTGGACCTAGG
CACGGACTATCTGGCGCTCGAGCGCTTGCATGAGGCGGCGGAGGCGAGCA
AGCAGGAGCTGAGTCTGAGCCCGTCCTCGACCCTGCGTCTCCCCTTCATC
ACCGCCGACCACCGGGGGCCGAAGCACCTGGACGCGACCGTATCCAGGGC
CGCCCTGGAGCGACTAGCGCTGCCTGTCTTGGACCAGTTGGAAGCGCCCG
TGGTGGAGGCATTGCGGGCGTCGGGGGTGGGTCTGGAGGGCTTGCAAGGC
GTGCTGCTGGCGGGGGGCACGGCCCGCTTGCCTTTCCTGGGGGAATTCGT
GCGGAGCCGGCTCACACTGGGGAAGGTGAAGGTGCTGAGCGTGGAGGGTG
TACCGCCTGAGGAGGTGGCGGCGGTGGGCGCGGCTTATTACGGGCGACAG
CTCGTCGAATAATGCGTCTGGTACTGGTCAAAAGTGGGTGGCTGAAAGTA
CACACTTGAAAAAGAGCAGCCGTCTTCTTGAAACCTTTCCGAAATGCTTT
GCCTTTGTTGTCACGCATTCTGCTGCCTATTCACATGCTTCTCGCCACTC
GCCGCACTCTCT

Coding sequence (CDS) from alignment at CM002457.1:572351..574162-

>rna1411 ID=rna1411|Name=rna1411|organism=Nannochloropsis gaditana|type=CDS|length=1620bp|location=Sequence derived from alignment at CM002457.1:572351..574162- (Nannochloropsis gaditana)
ATGCGGGCGGCGCTTTCTTTGTCCCACAAATTGCGTGATGCTCGCCTCCA
CTCCGTTGCCCTCTCCACCGCTCCGTCCGCAACTATCGCCTTTGCCTATG
CCCAAGACACTTCGCCCCGCAGCCGCCCTTGCTGCATGAGGCGGCCTCCT
CGGACCCGGCAAGATGCGCGACGGTGCTTTCGTGCGACGTGCCGGAGGGA
GAATCCTGTGCTCATCGGTATTGGTATACTTGTAGGGGCGACACTTGCCC
ATTACCTAGTACGGGCGGCGCAACGGATAGCCAAGGCAGACAAGAAAAAG
AGAGAAGGCAAAGAGGTCACTGACGACGAGGAGGAGGAGAGGGATCACGA
GGAAAGTGAAGGGCGAGAGGAAGCGGGCGCGAACGTCAGGCGTGAGTTTC
CGGTCCTGGGACTAGACCTGGGATCTTCGCAGGCATGCGTGGCTTTCGTG
GCTGCGAAAGAACGAGCGCCAGAGGTGGTGGAGAATCATGAAGGCCGACG
GTCTACTCCTGCGTTCATATCCTATGAAGATGATCACCTGGTGGTAGGAC
AGCTGGCTCGCCGAGCACGATGGAGGGAGCCCGCGAAGGTGGGCTTCAAC
ATCCAGCGCCTGCTGGGCCTGGCCGCTTACGAGGACAAAGTCCGGCCTTT
GTTCCCCTTCGCCGTCGACGCCAGGGAAGGATCTGCGGACGGGGACCTCT
CTCCGTTGGTCATGAGGCTCAAGGGGGGGCGAGCCCTGACGCCCCTGGAA
GCGAGCGCGCGGGTCCTTGAGGAGCTCGTGCAGTCCGCGGAGCACAAACT
GCACACCACCCCGGGTTTCGCCATCCTCGCAGTCCCCTCCTACTTCGATG
AAGGGGCGAAGCGTCGGGCGCTGAAGGCGGCCGCCGATGCGACGGGTCTG
AGCGTTGGGGCGGACGAGGGGCAGGGCGGGGGCCTGGCGGTGGTGGAGGA
CGCGGTGGCAGCCCTGGTCTGCGCCCACTACTCGGGGGCCGTCTCGGACG
AAGAGGCCTTCTTCGGGAAGCCCTGGCTGGTGCTGGATGTGGGGGGCCTG
AACGCGCAGGCCTCGGTGGTGGCCATGGACCCCCAGCAGGGGCTGGGCGT
GCGGGCCAACAGGACGACGTGGGCTGTGGGCGGGGAGCAGCTAGACGGGG
TGCTGGTGCAGCACCTCATCTCCGACTTCAAGGAGAAGCACGGCGGCCTG
GACCTAGGCACGGACTATCTGGCGCTCGAGCGCTTGCATGAGGCGGCGGA
GGCGAGCAAGCAGGAGCTGAGTCTGAGCCCGTCCTCGACCCTGCGTCTCC
CCTTCATCACCGCCGACCACCGGGGGCCGAAGCACCTGGACGCGACCGTA
TCCAGGGCCGCCCTGGAGCGACTAGCGCTGCCTGTCTTGGACCAGTTGGA
AGCGCCCGTGGTGGAGGCATTGCGGGCGTCGGGGGTGGGTCTGGAGGGCT
TGCAAGGCGTGCTGCTGGCGGGGGGCACGGCCCGCTTGCCTTTCCTGGGG
GAATTCGTGCGGAGCCGGCTCACACTGGGGAAGGTGAAGGTGCTGAGCGT
GGAGGGTGTACCGCCTGAGGAGGTGGCGGCGGTGGGCGCGGCTTATTACG
GGCGACAGCTCGTCGAATAA

Synonyms

Publications