rna1402, rna1402 (mRNA) Nannochloropsis gaditana

Overview
Namerna1402
Unique Namerna1402
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length933
Alignment locationCM002457.1:551058..552251 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100029g24.9524.mrna
Orig protein idgnl|cribi|Naga_100029g24.9524
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:551058..552251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100029g24gene1353Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1402rna1402-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29267.1cds1400Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1402 ID=rna1402|Name=rna1402|organism=Nannochloropsis gaditana|type=mRNA|length=933bp
ATGCGGCTATCCTCTACAGTAAAGGATAAAATGGGCACCGCGCAGGCAGT
TCTAATCCTTTTGATCTCGATCTCTCTAGTAAAGGGCTTTTTGGTGGGCC
ACAGACATCAGTTGCGTGTGCCAACTTCGTCGCAAAGGACACAAGGGGCC
AAGACGACGACGTACATGTCCTCCACTGACATCGACGAGAGCAGCCTGGG
CCTGACCCCCCGCCTTTTGGAGGTCTCACGCGCCTTCCAACTCATGGACG
AACGCACGCGTGTACAGAATTTGCTGGCGTTGGCCTCTTCTATGAAGCCC
ATGAAGGATTTTCGGAAGCTGTCCGAAAATAAGGTCCCGGGATGCCTGTC
TACGGTGTACGTGCACGCCTTCATGCAAGACGGAAAAGTCTATTTCGAAG
GAGACTCAGACGCACAATTGACAAAGGGCTTGGTGGCTCTGCTGATTGAG
GGGATGTCTGGCTGCAGTGCTGAAGAGATTCAAGCAGTGAAACCAGAATT
TATCAAGTATGCGGGTATTGCAGCGAGCTTGACGCCCGGGCGCAACAACG
GGTTTCTGAACATGTTGGCCATGCTCAAGCGCAAGGCTGTGGAGGCTGAG
TCGAAGGGCGAGGGCGCTGGGCAGGAGGAGCCGGCCGTGGAATTCCAGGA
GGACATTGCCCGACCTGTCTACAGCAGCTGTATGAAGAAACTGATCAATT
TCCTGAAGCCGAAGCGTCTGGAGATGCAGGACGATTCAGCGCAGCACGCG
GGCCACGCAGGCGCCAAAGGCCTCGGGGGAGAGAGCCATTTCAGCCTGCG
GATCGTCGCCGACTGCTTCGAGGGCCTGAGCCTCGTCCAGCGGCACAAGC
TGGTGTACACGGTGCTGGCGGCAGAGATGCAGCAGATCCACGCGCTGTCC
ATCGATGCCAAAACCCCCGCAGAGGCTGGTTAA
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protein sequence of rna1402

>rna1402-protein ID=rna1402-protein|Name=rna1402|organism=Nannochloropsis gaditana|type=polypeptide|length=363bp
MGGGTFLRCHVPAVTLAVSLLLQIEAFPLSTARAGSVFKGPRLRLKRLLV
SGAPVAAPVTATAASVAPDLEFGNSGIEGGDVDVEWFEALQAYGRDSRPS
DPLLKLLAGVSSWMQFETRVENEWVTNRVECEEDRDRLKMKLGDFMDALQ
EYVHAHTLFTQVLSPTANGCDGMFLERVRFEAFESAQSTIRRKQEGYLAA
HVRFWADLAAVLRSQEDIPQGGVAQLDQTIALPAPYGQGDSGIVSLPPPS
LFPWALDEVGGGVEDQVGAVLLLKAAVLPALETAKRERSKESFSRYAKLW
GRLWRKAGTWFGADPESSAFLEELYRSTGGRVAMNDDSSRTGLSLAGVGP
VERRGMEDAWLQE
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mRNA from alignment at CM002457.1:551058..552251-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1402 ID=rna1402|Name=rna1402|organism=Nannochloropsis gaditana|type=mRNA|length=1194bp|location=Sequence derived from alignment at CM002457.1:551058..552251- (Nannochloropsis gaditana)
ATGGGCGGTGGAACGTTCTTGCGGTGTCACGTCCCGGCGGTCACACTTGC
TGTCAGCCTCCTTTTGCAAATTGAAGCTTTTCCGCTGTCGACGGCACGGG
CTGGCTCAGGTAAACACGACCACTTTGTCGCACTAGCCTTTATGCTATTG
TTCAATATGATATAGTCAACGTTATACAACCGATTGTTTTTTGCTTCCTT
TCTCCTTTCAGTCTTCAAAGGACCACGGCTTCGGCTAAAGCGCCTCCTCG
TCTCTGGTGCACCTGTGGCTGCCCCCGTCACGGCCACGGCCGCCAGTGTC
GCGCCTGATTTGGAATTTGGCAATAGCGGTATAGAAGGAGGGGATGTAGA
CGTGGAGTGGTTCGAAGCCCTGCAAGCTTATGGGAGAGATTCGAGGCCTT
CCGACCCCCTCTTGAAGCTGCTGGCAGGCGTCTCATCGTGGATGCAATTC
GAGACACGAGTGGAGAACGAGTGGGTGACTAATCGGGTGGAGTGTGAGGA
GGATCGAGACCGACTGAAAATGAAGCTTGGAGATTTCATGGACGCCCTGC
AGGAGTACGTGCACGCGCACACGCTTTTCACCCAGGTGCTGTCTCCCACG
GCCAACGGCTGCGATGGCATGTTTTTGGAACGCGTGCGCTTCGAAGCCTT
CGAGTCGGCGCAATCAACGATTCGTCGCAAGCAAGAAGGGTACCTGGCTG
CGCACGTCCGGTTTTGGGCGGACCTGGCGGCGGTCTTGCGGTCGCAAGAA
GACATTCCTCAGGGCGGCGTTGCTCAACTGGACCAGACAATAGCCTTGCC
GGCACCGTACGGACAGGGGGACTCTGGTATTGTCTCCCTGCCTCCTCCCT
CTCTCTTTCCGTGGGCCCTGGATGAGGTAGGGGGTGGGGTGGAGGATCAG
GTGGGCGCCGTACTACTTTTGAAAGCCGCGGTGCTTCCGGCCCTGGAGAC
GGCCAAGAGGGAGAGGAGCAAGGAGTCATTCTCCAGGTACGCGAAGCTGT
GGGGCAGGCTATGGCGGAAGGCGGGCACGTGGTTTGGGGCAGACCCCGAA
TCCTCCGCGTTCCTGGAGGAGCTGTACCGGAGTACGGGAGGCAGGGTAGC
AATGAATGACGATTCGAGCCGCACCGGATTGTCGCTGGCGGGGGTGGGGC
CCGTGGAAAGGAGGGGCATGGAGGACGCGTGGTTGCAGGAGTGA
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Coding sequence (CDS) from alignment at CM002457.1:551058..552251-

>rna1402 ID=rna1402|Name=rna1402|organism=Nannochloropsis gaditana|type=CDS|length=2184bp|location=Sequence derived from alignment at CM002457.1:551058..552251- (Nannochloropsis gaditana)
TCTTCAAAGGACCACGGCTTCGGCTAAAGCGCCTCCTCGTCTCTGGTGCA
CCTGTGGCTGCCCCCGTCACGGCCACGGCCGCCAGTGTCGCGCCTGATTT
GGAATTTGGCAATAGCGGTATAGAAGGAGGGGATGTAGACGTGGAGTGGT
TCGAAGCCCTGCAAGCTTATGGGAGAGATTCGAGGCCTTCCGACCCCCTC
TTGAAGCTGCTGGCAGGCGTCTCATCGTGGATGCAATTCGAGACACGAGT
GGAGAACGAGTGGGTGACTAATCGGGTGGAGTGTGAGGAGGATCGAGACC
GACTGAAAATGAAGCTTGGAGATTTCATGGACGCCCTGCAGGAGTACGTG
CACGCGCACACGCTTTTCACCCAGGTGCTGTCTCCCACGGCCAACGGCTG
CGATGGCATGTTTTTGGAACGCGTGCGCTTCGAAGCCTTCGAGTCGGCGC
AATCAACGATTCGTCGCAAGCAAGAAGGGTACCTGGCTGCGCACGTCCGG
TTTTGGGCGGACCTGGCGGCGGTCTTGCGGTCGCAAGAAGACATTCCTCA
GGGCGGCGTTGCTCAACTGGACCAGACAATAGCCTTGCCGGCACCGTACG
GACAGGGGGACTCTGGTATTGTCTCCCTGCCTCCTCCCTCTCTCTTTCCG
TGGGCCCTGGATGAGGTAGGGGGTGGGGTGGAGGATCAGGTGGGCGCCGT
ACTACTTTTGAAAGCCGCGGTGCTTCCGGCCCTGGAGACGGCCAAGAGGG
AGAGGAGCAAGGAGTCATTCTCCAGGTACGCGAAGCTGTGGGGCAGGCTA
TGGCGGAAGGCGGGCACGTGGTTTGGGGCAGACCCCGAATCCTCCGCGTT
CCTGGAGGAGCTGTACCGGAGTACGGGAGGCAGGGTAGCAATGAATGACG
ATTCGAGCCGCACCGGATTGTCGCTGGCGGGGGTGGGGCCCGTGGAAAGG
AGGGGCATGGAGGACGCGTGGTTGCAGGAGTGAATGGGCGGTGGAACGTT
CTTGCGGTGTCACGTCCCGGCGGTCACACTTGCTGTCAGCCTCCTTTTGC
AAATTGAAGCTTTTCCGCTGTCGACGGCACGGGCTGGCTCAGTCTTCAAA
GGACCACGGCTTCGGCTAAAGCGCCTCCTCGTCTCTGGTGCACCTGTGGC
TGCCCCCGTCACGGCCACGGCCGCCAGTGTCGCGCCTGATTTGGAATTTG
GCAATAGCGGTATAGAAGGAGGGGATGTAGACGTGGAGTGGTTCGAAGCC
CTGCAAGCTTATGGGAGAGATTCGAGGCCTTCCGACCCCCTCTTGAAGCT
GCTGGCAGGCGTCTCATCGTGGATGCAATTCGAGACACGAGTGGAGAACG
AGTGGGTGACTAATCGGGTGGAGTGTGAGGAGGATCGAGACCGACTGAAA
ATGAAGCTTGGAGATTTCATGGACGCCCTGCAGGAGTACGTGCACGCGCA
CACGCTTTTCACCCAGGTGCTGTCTCCCACGGCCAACGGCTGCGATGGCA
TGTTTTTGGAACGCGTGCGCTTCGAAGCCTTCGAGTCGGCGCAATCAACG
ATTCGTCGCAAGCAAGAAGGGTACCTGGCTGCGCACGTCCGGTTTTGGGC
GGACCTGGCGGCGGTCTTGCGGTCGCAAGAAGACATTCCTCAGGGCGGCG
TTGCTCAACTGGACCAGACAATAGCCTTGCCGGCACCGTACGGACAGGGG
GACTCTGGTATTGTCTCCCTGCCTCCTCCCTCTCTCTTTCCGTGGGCCCT
GGATGAGGTAGGGGGTGGGGTGGAGGATCAGGTGGGCGCCGTACTACTTT
TGAAAGCCGCGGTGCTTCCGGCCCTGGAGACGGCCAAGAGGGAGAGGAGC
AAGGAGTCATTCTCCAGGTACGCGAAGCTGTGGGGCAGGCTATGGCGGAA
GGCGGGCACGTGGTTTGGGGCAGACCCCGAATCCTCCGCGTTCCTGGAGG
AGCTGTACCGGAGTACGGGAGGCAGGGTAGCAATGAATGACGATTCGAGC
CGCACCGGATTGTCGCTGGCGGGGGTGGGGCCCGTGGAAAGGAGGGGCAT
GGAGGACGCGTGGTTGCAGGAGTGAATGGGCGGTGGAACGTTCTTGCGGT
GTCACGTCCCGGCGGTCACACTTGCTGTCAGCCTCCTTTTGCAAATTGAA
GCTTTTCCGCTGTCGACGGCACGGGCTGGCTCAG
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Synonyms
Publications