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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100029g28.9537.mrna |
| Orig protein id | gnl|cribi|Naga_100029g28.9537 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:542424..544031 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1397 ID=rna1397|Name=rna1397|organism=Nannochloropsis gaditana|type=mRNA|length=1593bp
CGCTCGTGACGTTGGCTCCCTCGGCGAGACCCGTTCCTGCTTCCATTTCA
TCGAGGACAAGTAAGAAGTCGACCTGATGGTCTTTCGTGATCATGGGGCT
TTATATCTGTGCCATAGCATTCTCTCGATGCGTGTCAACGGAGTGCTTTA
TAGCGTCTGTTCCTTGTATAAAGGGGCTTCGCTGAAGCCTGACTATGATG
GAACCTCACGGCTGTCTCATCATCACCTGCCAGTGCCTCCCCCTACTCTG
TTGCCTTTGATAAAGCACTCGGCAATGAGGGAATGGCTGCTGCTACCAGA
TGCAGCGCTTTTCCTTGGAGTTGCTGGCCTTTGCTTTTTAGAAAGAGTGC
GGTCGAAAGAAGACTCCGATATGGCCACTACCAGCGCCGGCATGGAGATG
CGTCGGCGCATCCAGCTTCTGCTACTAGTTGCCAATTTGACAAGATGTGT
ATGCTTAATTGTGGAGACCGCGCTTTTCGAAGCACACAATTGTCCTAGCC
TCTGGACGTGTGCCGTGGTGCGCTGTGTGCCCGACCTACTGTTCCTCACC
ACCTACAGCCTCCTCCTCCTCTTCTGGGCTCAGCTGGGTCGCACCGCCAG
AGGCGCGCCTTGTCCCAGGCTCAATCTTATGTTCAGTCTGGGCAACGGCA
CGTTATACACAGGCTTTCTCCTCATTGTCGCCATGGCAGCGGGAGACGTG
CTATCGCACGGCGAGGCCCTCCAATCCTTCTTCATGCTCCTGGGTCTGTC
CTACCTGGTTTCCTTCCTCTTCGTCCTCAAGTTTGCGCACCAATTCTCCC
GCATGGCTCTTCCTTATCTCCTTCGCCGACGAGTACTAGCGCTCTCTCTC
TTGTGCGGGACGGTGTTTCTCGTACACATGATATACTATCTGAGTGTCGG
CACGGGCTTGCTCGCCTCCTGGCTCGCCAGGTCAGGGTATCCTCCCCGCC
CGGAAGCCTACATTTTCGACGCAATCCTGTACCCGCTTCAGGAGCTCCTT
CCCTCTCTCGCCATCCTGGCGGTCTTGAACCGGCGGAGGGGCCAGCTCCC
TACTCCTCTCGCCGCGGCTTATCCCTACCTGGGGGCGGGGCCCTATACCA
AGATTGGCAGCGGCGATCATGCACACGGGTCAGGATTGGGGCCTGGGAGC
AATGGCTTGGGAGGGGGGAGTCAGTCGGCGGCGCTTGCAAGTGCTTTCTA
CAGGCACAACGGGCCTAGGAAGGGAGACGGAGGGGGGCAGAGATCGGGCA
GGCAGACAACTCACGAGGATCGTCATCACCAGAAACACTTTTGGATGAAT
ATGGTGGTGAAGGAAGGTCAAGAGGCCCGAGGAGGAAGTGGAATGATGGG
GTTGATGGGTATCTACACGCCTCACGAAGCCACGACGACTCCATCGATCA
GCAGCGAGAGCACGGCCTCAGCATACCAAGCCGTGCCGTAGGCGACAGCT
GTACATCTTACCACTTTGCCTTTTCGTAGCATGCTGTTTATATTTTAAAT
TAAAAGGAGAGTGCATCACAGACTTGTGAAGTAATTTTGAGCGTTGGTCA
AAATGAAAGACGTACATTTGCCACGACGAACAAGTCAGTCACA back to topprotein sequence of rna1397 >rna1397-protein ID=rna1397-protein|Name=rna1397|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MVWEKETASQRQDGRDGDDRVDPFAAAERKLEDLVWAELLKAEESLYASG
SDNASTAAKKDQSKGLAVQDVHPNDPEAQFWALHHRQEEEAKLRALEGKL
NFVREWSSAFVQVRALGKSVCTSLPAHQPKLDTEAEGTEDTVSPHSRVTG
SEEPLCSMPSFPKFLSAKEQKQRDEIRNDHTDVYNYRSVYSRVESKDPAG
LYARSCQQSVEAQEEVLAV back to topmRNA from alignment at CM002457.1:542424..544031+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1397 ID=rna1397|Name=rna1397|organism=Nannochloropsis gaditana|type=mRNA|length=1608bp|location=Sequence derived from alignment at CM002457.1:542424..544031+ (Nannochloropsis gaditana)
CCATCATAGTCAGGCTTCAGCGAAGCCCCTTTATACAAGGAACAGACGCT
ATAAAGCACTCCGTTGACACGCATCGAGAGAATGCTATGGCACAGATATA
AAGCCCCATGATCACGAAAGACCATCAGGTCGACTTCTTACTTGTCCTCG
ATGAAATGGAAGCAGGAACGGGTCTCGCCGAGGGAGCCAACGTCACGAGC
GAGTCTTTACCCCCCCGGCACTACTCTAGCGCTGTCCGGGTGTCACGTGC
GTGGCTACTGTCACACTATTACGCCTTCCTTACACAGATTTATAAACCAG
GCACTCAATAGGCGACAAAAGGTGTCGTGAAGTTGCCTTGCATGCTTGCA
AAAAAATAGCCATCTACGAAGTCCGCCAAAGGTGTGCAAGCTGGTCAGCC
GGAAACATGgtttgggagaaggagactgCGAGTCAAAGGCAGGacggaag
agatggagacgACAGGGTCGATCCATTTGCAGCGGCAGAGCGAAAATTAG
AAGATCTAGTTTGGGCAGAACTACTCAAAGCCGAGGAGTCTCTGTATGCC
TCCGGCAGCGATAATGCTTCTACAGCAGCCAAGAAAGATCAATCCAAAGG
TTTGGCAGTGCAGGATGTACATCCGAATGACCCGGAAGCTCAATTCTGGG
CCTTGCACCACcgacaagaagaggaggcaaaaTTAAGAGCTCTGGAAGGA
AAACTCAACTTTGTCAGGGAGTGGTCTTCCGCCTTCGTCCAGGTCAGGGC
GCTGGGCAAGTCAGTGTGCACTAGTCTTCCAGCTCATCAACCCAAGCTTG
ACACAGAGGCAGAGGGTACAGAAGATACCGTGTCGCCACATTCGCGAGTA
ACAGGATCGGAAGAGCCTCTTTgttccatgccctcctttcctaaATTCCT
TTCGGCGAAAGAGCAAAAGCAGCGAGACGAGATTAGGAATGATCACACGG
ACGTTTACAACTACCGATCTGTGTACAGTCGGGTCGAAAGCAAAGATCCT
GCCGGATTGTATGCAAGATCATGTCAACAATCAGTGGAGGCTCAGGAGGA
AGTTTTGGCTGTGTAAGACGTGTGCTACGTGCTTctattttcttccccct
ctgcaaTGAGATATAAGTTGATGAAGTTTGGATATTCGACTCTCTCATAA
AGTCCTCACGTACAACCACAGCCATTGCAGCAGAGAGGACAAGAGTACCC
GAACAGTTGATTGTCGTAAAGAAGGGCAACACCGTAGCAAACAGCAGGAA
ACTCATATATATGCATCTCACGACATGATACAAGACGTTCAAAAGTTCCA
TGATCCATTTGAAAACGCAAAAGAAAAATTGtgcagagggggggagcttG
CAGAAAGGCTGGTTGAGGGGATCTGGCAAGATGCGCTAGTTCTACTCGAA
GCACCATTAATGCAAATGATCGAGGCAAAGCGTACTGAGACAAATGTCCA
TCCTGAAAGAGCGATGACCTGCGACATGCCGGAAATTTCCTCTGACGATT
CAGGAGTCAAAATTGCCAACAAGCGCAAGCTGAGTACATCCACCACATGC
AAGTAAAAAAAGGCGCGGATGTAGAGAACCTGAAATACACTATGTCGATT
ATATCTGG back to topCoding sequence (CDS) from alignment at CM002457.1:542424..544031+ >rna1397 ID=rna1397|Name=rna1397|organism=Nannochloropsis gaditana|type=CDS|length=660bp|location=Sequence derived from alignment at CM002457.1:542424..544031+ (Nannochloropsis gaditana)
ATGgtttgggagaaggagactgCGAGTCAAAGGCAGGacggaagagatgg
agacgACAGGGTCGATCCATTTGCAGCGGCAGAGCGAAAATTAGAAGATC
TAGTTTGGGCAGAACTACTCAAAGCCGAGGAGTCTCTGTATGCCTCCGGC
AGCGATAATGCTTCTACAGCAGCCAAGAAAGATCAATCCAAAGGTTTGGC
AGTGCAGGATGTACATCCGAATGACCCGGAAGCTCAATTCTGGGCCTTGC
ACCACcgacaagaagaggaggcaaaaTTAAGAGCTCTGGAAGGAAAACTC
AACTTTGTCAGGGAGTGGTCTTCCGCCTTCGTCCAGGTCAGGGCGCTGGG
CAAGTCAGTGTGCACTAGTCTTCCAGCTCATCAACCCAAGCTTGACACAG
AGGCAGAGGGTACAGAAGATACCGTGTCGCCACATTCGCGAGTAACAGGA
TCGGAAGAGCCTCTTTgttccatgccctcctttcctaaATTCCTTTCGGC
GAAAGAGCAAAAGCAGCGAGACGAGATTAGGAATGATCACACGGACGTTT
ACAACTACCGATCTGTGTACAGTCGGGTCGAAAGCAAAGATCCTGCCGGA
TTGTATGCAAGATCATGTCAACAATCAGTGGAGGCTCAGGAGGAAGTTTT
GGCTGTGTAA back to top
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