rna1391, rna1391 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1391
Unique Name	rna1391
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2655
Alignment location	CM002457.1:527760..529975 +

Link to JBrowse

Properties


Property Name	Value
Product	aspartyl glutamyl-trna amidotransferase subunit b
Orig transcript id	gnl\|cribi\|Naga_100029g34.9535.mrna
Orig protein id	gnl\|cribi\|Naga_100029g34.9535
Gene	gatB
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:527760..529975 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gatB	gene1343	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1391	rna1391-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29278.1	cds1389	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:527760..529975+
coding sequence from alignment at CM002457.1:527760..529975+

mRNA sequence

>rna1391 ID=rna1391|Name=rna1391|organism=Nannochloropsis gaditana|type=mRNA|length=2655bp
TCGTGGGGGCGACGGGAGGTGTCACGCGTTGACAGCAGGGCCACATGGTA
TTTTCGAGTTCCGCAAAGTTGTCTTGTGACGAAGACAAAATATGGAATAA
CAAAGCACACATTAAATGCTATCACCCACATCTGTTTGAGTGTTATGCAG
AGGTAGAAATTGCCTTAAATTGGAGCAATTGTTGACTATGAAGGTGTCCC
ACGGCTTTTGAGGTTTAAGAAGAAAGGGGCCTTTACCCGCTTTGCCCCAG
TACTTGCCCCTCCACAGCCCGATATGCAGGAGACAGTTGTACTAGGACTT
GATTCAATATTTCACACTGTGCCCCAAAGTAAGCGGTGATCTGCGTGATG
ACAATTCTCTCACCCTGCTTCACTTGCGTGTCCTCTTCATCAGGCTTTGA
AGGTCGCGTGGTGGATTTGGAAACATTCGAGCCTGAAAAATTACAGGCCA
CAAGCCTGGCGATATTTCTATTGGCTACGTATGGGGAGGGGGATCCCACA
GACAACGCGATGGCCTTCTCCAAGTGGCTGCGAAACGAGGATGACGAGCT
CTCGGAGCAGGCCTTGGGGGGGTTGAAGTACGCCGTCTTTGGCCTCGGAA
GTACTCAGTACGAGCACTACAATAAGATGGGTAAAGTAGCACACCAGCGG
TTGCAAGACCTGGGGGCCCGCCCCGTGGTCGACTTGGGCCTGGGCGACGA
GCTGACGGTGGAGGAAGATTTTGAGAGATGGAGCGAGGGCCTCTGGTCCG
AGTTCACACAGGCGGCTATCGAAATGGGCCGTTCCGATACGGTTGCCATT
GTAGAGCCGGCTGAGGTCCCAGCGCAAGGGGAGCAGCTAGACTTCACCCT
GAAGCTGCTGCCGACGAAGGGGCTTCTGGGTCGAAGCACCGGGAAAGAGA
AGGTCGGGCCCAGCGCGAGCAACGGCGCCGGGGTGGTGAAGCTGGACGAG
AGCAAGATCCAGGCGTCTACAAAGTTCTACTTCCACAACCACGAGGTGGC
GGTGTTGACCAACCGAGAGCTCCGCTCGCCCAGGGACGGGGGCTCCACGC
GACATGTGGAACTGGACCTGGCAGGCTCGGGCCTCACGTACGCAACGGCC
GACAACCTCGCTGTCCTGCCCGAGAACCCGGCCGCGGTGGTGGAGGCAGT
GGCCGGCGGCCAAGGGTACGACCTGGACGCTCTCTTCGACATGGTGTGCG
AGAAGGCCAAGTTCCCAACGCCGTGCACGGTCCGCGACGCCCTGACGCTC
TACCTCGACCTGTGCGGACTCCCGCGCCGTACCACCTTAGGTCAACTGGC
GGCGTTCGCCCTCTCAGCCAAAGAAGCCGAGCGAATGAAATTTTTAGCTT
CGAAACAGGGCCGCGAAGAGTACAATCGTTTTGTCGTCCAGGAAGGTCGC
TCTCTGGCTGAACTCATCACGGAAAGCTTCCCTTCGGTCCGCTTGCCTCT
GCAGCACTTGATCAACCTGGCGCCGCACCTACAGCCCCGCTACTACACCA
TCTCGTCCTCCTCCTCCGTCTACCCATCCCAGGTGCATGCCACCGTCGCG
GTCACCAAAGACGAGCCCCGACCAGGCCGCGTGCATTGGGGGGTCTGCTC
GAGCTACTTGGCCGCCCCCTCCACCCAGCGCGTGCGAATTTTCATACGAC
CTTCCAGCTTCCGCCTCCCCGTCGATAGTGCCACACCAATCATCCTCATA
GGTCCGGGCACGGGGATAGCTCCCATGCGTGCCTTGCTCCAAGAACGACG
CTATCAACGTCAGGCGGCGGGCAAGGAGGTGGGCGAGACCCTCCTTTACT
TCGGCTGCCGGCGACGGGATACGGACTTTCTGTACGAGGAGGAACTGGCG
AGCTTCAAGGAAGACGGGACTCTGACAGACTTGCAATTAGCTTTCAGCAG
GGAGAAGAAGGAGAAGGTGTACGTGCAGCATCTCCTTGTTCAAAGCGCGA
ATGCAAGCAAGCTCTGGGCTTTGATGTCGAAGAAGTCGGGCCACATATAC
GTGTGCGGTGGCACGAGCATGGGTTTGGATGTACACAAAGCCATCGTAAG
CGTTGTGGAGAGAGCGGGGAAGTTGAACGAGAGGGCTGCGACTGATTACG
TCAAGGCGTTGCAGGCCCAGGGAAGGTATGTTCAGGAGCTGTGGGCCGCA
TAAGGTCGACGGTCCATTGAGCATTCGTCCGATCTAGGTCAGAATGATGG
GGAAAATTGTCCAAATAATTTAGCGCGAGCTTACGAGCTGTTTGCATTTG
CTCATGGTGTATGTGGGCGAGAGGAACCTGCGTGTTTTCGTGTTCAAGGA
GTAGTGTGCGAGCGAATACCCGCGCACGCATGTGTGGCAAGGAGGAAAGA
AAGTGTGTCATAGGTTTCAGTAGACCCCGTAGCAGACGCAATGAAAGGCA
GTAGCAGTAGCAAGACAAGTGGCGGCAAATACGGGTCATCGGATCACCAG
CAGTCGTTTCTCTTTCCTCTCTCCCTATGTTCTTCGCCGAACGGTCTTGA
TTCTTGCGGTAGGAACGATGGAGGGGGAACAAGAGTAAGCGCAACAGAGT
ACTGACAAATACGGATGGAAGGATCATCTTAAGATGCCTTTGTAGAACAT
CTAAAAAGATAGCATAAAGAAATACAATCTAAACAAAATACAAGGTGCTT
GAGTC

protein sequence of rna1391

>rna1391-protein ID=rna1391-protein|Name=rna1391|organism=Nannochloropsis gaditana|type=polypeptide|length=427bp
MALQCEIAHEVRYDRKNYFYPDTPKNYQITQYTHPLGAGGCLELPSGRRV
SITRLHVEEDSAKMVHQGSDSLAGSTHSLVDFNRAGIPLAEIVSEPDMRS
GAEAAEYGRELQKILRYVGASDGNMAEGSMRLDINVSIRPRGEEGLRPKV
EVKNVNSFKSVQQAVDFEVVRQARAYDAGEAVRQETRMWDEKELASKLMR
VKEGESDYRYFPEPDVPPLALASSVVQAWRATLQELPAAKRARYQDPAGL
NLDAETTKFLTDDLAVARFFEAAVEQHGAEPKEAAKWLVGDIAGHLNGNK
GRVKEFGKIKLTPAGLAELVGLIGQGKITGKIAKELLPELLDEWEGGEEG
AVLDLVQARGLEAITDPAVIAALVQKVLEANPEKVEDFRGGKTKLLGFFV
GMVLKESGSRANPEVVQSLTVEALNGA

mRNA from alignment at CM002457.1:527760..529975+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1391 ID=rna1391|Name=rna1391|organism=Nannochloropsis gaditana|type=mRNA|length=2216bp|location=Sequence derived from alignment at CM002457.1:527760..529975+ (Nannochloropsis gaditana)
TCGCTTTCGCGTACTTTGTCGTTCGGATGGAAACCATCTCCAACTACATT
GTTGCGTCTTTTCGATTGCTCCACTCAGCTAGCCTCTCATCCGCACAAAA
AGGGACAGAAGTATCACCAGTGGCCCGTCCGTCATCTACGATGCATACTC
GCCCCTGcgcagcaaggaaaaggcctcgatccttctctctcccattTCGT
CAGCTTTTGCTCGTTGCCGTGGCCGCAACTACAGGGATAGTTAGAACAGC
GCAGGCATTTATTCTGCCCAGCAGTAGCGTCAATCAGGCACTGCGTAGTG
CGCAAGTAATTCGCatgggcaagggggggggcggggggatggCAAAAAGA
GGTCAGAATTGCAAGAGGTGCGTGCAATTCAAGCAAAATTTGCTCCCACT
TTTTTGAAGAAGGCAACATGCAGCCTTCTGGTCTCAAAAAACGGCATCAT
ATTTCACACGGCACATTGTACCCTTATGTCATGCTAGGTCCTCGAGCGAT
ACGAGCCGGTCGTCGGTGTAGAGGTTCACGCCCAGCTCCTTTCCGACACG
AAGGCATATTGCGGTTGCTCAAGCCATTACAATCCTGACATTCCGAACGC
TAACATATGCCCAGTGTGTACGGGAGAGCCTGGTACCTTGCCCGTTCCCA
ATGCGCGCGTGGTGGAATTGGCAAGTAAAGCCGCAATGGCGTTGCAATGC
GAGATTGCTCACGAAGTGCGCTACGACCGAAAGAATTACTTCTACCCTGA
CACCCCTAAGAACTATCAGATCACTCAGTACACCCATcccctgggggcgg
ggggatgTTTGGAACTGCCGAGCGGGAGGCGGGTATCCATCACGCGCttg
cacgtggaggaagactcGGCGAAAATGGTCCATCAGGGAAGCGACAGCCT
GGCGGGCTCCACGCACTCCCTCGTCGACTTCAACCGTGCGGGCATTCCGC
TGGCGGAAATCGTGTCGGAGCCGGACATGCGCTCGGGGGCGGAAGCAGCG
GAGTACGGCCGGGAGCTGCAGAAGATTTTGCGGTACGTAGGGGCCTCGGA
CGGCAACATGGCGGAAGGCTCCATGCGCCTGGACATCAACGTCTCGATCC
GTCcccggggcgaggaggggctgcggccgaaggtggaggtgaagaacGTG
AACTCGTTCAAGAGCGTGCAGCAGGCGGTGGACTTCGAGGTAGTAAGACA
GGCCCGGGCCTACGACGCGGGAGAAGCGGTGCGGCAGGAGACCCGGATgt
gggacgagaaggagctcGCCAGCAAGCTTATGCGtgtcaaggaaggcgag
TCCGACTACCGCTATTTCCCCGAGCCCGACGTTCCCCCCCTAGCTCTGGC
CTCATCCGTGGTGCAGGCCTGGCGGGCGACGCTGCAGGAGCTCCCGGCCG
CAAAGCGGGCGCGGTACCAGGACCCTGCGGGTTTGAATTTGGACGCAGgt
agggcgggatggagggaaaaagaaggcaaagGTGGTGTGCGGCGTTTTCG
TTGTAGGGACGGCTGTTGTCCTTCCCGCGGGGCTGCCTGGAGCTCTGTCT
CACGACACGCCCCCCGGCtaccttccctgcccctccacaGAGACAACCAA
ATTTCTGACCGACGATCTGGCGGTTGCCCGATTTTTTGAGGCGGCCGTGG
AACAGCACGGGGCGGAGCCAAAAGAGGCGGCGAAATGGCTCGTGGGGGAC
ATCGCCGGACATTTGAACGGGAACAAAGGCAGGGTTAAGGAGTTCGGAAA
GATCAAGCTCACGCCCGCGGGCCTGGCGGAGCTGGTGGGTCTGATTGGAC
AGGGGAAGATCACGGGAAAGATCGCGAAGGAGCTGCTGCCGGAGCTTTTG
GatgagtgggaggggggggaggagggtgcagTGCTGGATTTGGTCCAAGC
CCGGGGCCTGGAGGCGATCACCGACCCGGCCGTAATCGCCGCTTTGGTGC
AGAAGGTCCTAGAGGCGAATCCTGAGAAAGTGGAGGACTTCCGGGGGGGC
AAGACGAAGCTGCTTGGTTTCTTCGTGGGCATGGTGCTGAAGGAGTCTGG
GAGCCGGGCGAATCCTGAGGTGGTCCAGTCTCtgacggtggaggccctgA
ACGGGGCATGAGCCGTTGGGAAGGAGCGAAGGATAGGGCTGGATCGCCTG
TTTGAGTGCATAATTCTACACACAGGCATGTGGTAATCAAAGTAATCAGG
GGAAACTTCCTTCTTG

Coding sequence (CDS) from alignment at CM002457.1:527760..529975+

>rna1391 ID=rna1391|Name=rna1391|organism=Nannochloropsis gaditana|type=CDS|length=2568bp|location=Sequence derived from alignment at CM002457.1:527760..529975+ (Nannochloropsis gaditana)
ATGGCGTTGCAATGCGAGATTGCTCACGAAGTGCGCTACGACCGAAAGAA
TTACTTCTACCCTGACACCCCTAAGAACTATCAGATCACTCAGTACACCC
ATcccctgggggcggggggatgTTTGGAACTGCCGAGCGGGAGGCGGGTA
TCCATCACGCGCttgcacgtggaggaagactcGGCGAAAATGGTCCATCA
GGGAAGCGACAGCCTGGCGGGCTCCACGCACTCCCTCGTCGACTTCAACC
GTGCGGGCATTCCGCTGGCGGAAATCGTGTCGGAGCCGGACATGCGCTCG
GGGGCGGAAGCAGCGGAGTACGGCCGGGAGCTGCAGAAGATTTTGCGGTA
CGTAGGGGCCTCGGACGGCAACATGGCGGAAGGCTCCATGCGCCTGGACA
TCAACGTCTCGATCCGTCcccggggcgaggaggggctgcggccgaaggtg
gaggtgaagaacGTGAACTCGTTCAAGAGCGTGCAGCAGGCGGTGGACTT
CGAGGTAGTAAGACAGGCCCGGGCCTACGACGCGGGAGAAGCGGTGCGGC
AGGAGACCCGGATgtgggacgagaaggagctcGCCAGCAAGCTTATGCGt
gtcaaggaaggcgagTCCGACTACCGCTATTTCCCCGAGCCCGACGTTCC
CCCCCTAGCTCTGGCCTCATCCGTGGTGCAGGCCTGGCGGGCGACGCTGC
AGGAGCTCCCGGCCGCAAAGCGGGCGCGGTACCAGGACCCTGCGGGTTTG
AATTTGGACGCAGAGACAACCAAATTTCTGACCGACGATCTGGCGGTTGC
CCGATTTTTTGAGGCGGCCGTGGAACAGCACGGGGCGGAGCCAAAAGAGG
CGGCGAAATGGCTCGTGGGGGACATCGCCGGACATTTGAACGGGAACAAA
GGCAGGGTTAAGGAGTTCGGAAAGATCAAGCTCACGCCCGCGGGCCTGGC
GGAGCTGGTGGGTCTGATTGGACAGGGGAAGATCACGGGAAAGATCGCGA
AGGAGCTGCTGCCGGAGCTTTTGGatgagtgggaggggggggaggagggt
gcagTGCTGGATTTGGTCCAAGCCCGGGGCCTGGAGGCGATCACCGACCC
GGCCGTAATCGCCGCTTTGGTGCAGAAGGTCCTAGAGGCGAATCCTGAGA
AAGTGGAGGACTTCCGGGGGGGCAAGACGAAGCTGCTTGGTTTCTTCGTG
GGCATGGTGCTGAAGGAGTCTGGGAGCCGGGCGAATCCTGAGGTGGTCCA
GTCTCtgacggtggaggccctgAACGGGGCATGAATGGCGTTGCAATGCG
AGATTGCTCACGAAGTGCGCTACGACCGAAAGAATTACTTCTACCCTGAC
ACCCCTAAGAACTATCAGATCACTCAGTACACCCATcccctgggggcggg
gggatgTTTGGAACTGCCGAGCGGGAGGCGGGTATCCATCACGCGCttgc
acgtggaggaagactcGGCGAAAATGGTCCATCAGGGAAGCGACAGCCTG
GCGGGCTCCACGCACTCCCTCGTCGACTTCAACCGTGCGGGCATTCCGCT
GGCGGAAATCGTGTCGGAGCCGGACATGCGCTCGGGGGCGGAAGCAGCGG
AGTACGGCCGGGAGCTGCAGAAGATTTTGCGGTACGTAGGGGCCTCGGAC
GGCAACATGGCGGAAGGCTCCATGCGCCTGGACATCAACGTCTCGATCCG
TCcccggggcgaggaggggctgcggccgaaggtggaggtgaagaacGTGA
ACTCGTTCAAGAGCGTGCAGCAGGCGGTGGACTTCGAGGTAGTAAGACAG
GCCCGGGCCTACGACGCGGGAGAAGCGGTGCGGCAGGAGACCCGGATgtg
ggacgagaaggagctcGCCAGCAAGCTTATGCGtgtcaaggaaggcgagT
CCGACTACCGCTATTTCCCCGAGCCCGACGTTCCCCCCCTAGCTCTGGCC
TCATCCGTGGTGCAGGCCTGGCGGGCGACGCTGCAGGAGCTCCCGGCCGC
AAAGCGGGCGCGGTACCAGGACCCTGCGGGTTTGAATTTGGACGCAGAGA
CAACCAAATTTCTGACCGACGATCTGGCGGTTGCCCGATTTTTTGAGGCG
GCCGTGGAACAGCACGGGGCGGAGCCAAAAGAGGCGGCGAAATGGCTCGT
GGGGGACATCGCCGGACATTTGAACGGGAACAAAGGCAGGGTTAAGGAGT
TCGGAAAGATCAAGCTCACGCCCGCGGGCCTGGCGGAGCTGGTGGGTCTG
ATTGGACAGGGGAAGATCACGGGAAAGATCGCGAAGGAGCTGCTGCCGGA
GCTTTTGGatgagtgggaggggggggaggagggtgcagTGCTGGATTTGG
TCCAAGCCCGGGGCCTGGAGGCGATCACCGACCCGGCCGTAATCGCCGCT
TTGGTGCAGAAGGTCCTAGAGGCGAATCCTGAGAAAGTGGAGGACTTCCG
GGGGGGCAAGACGAAGCTGCTTGGTTTCTTCGTGGGCATGGTGCTGAAGG
AGTCTGGGAGCCGGGCGAATCCTGAGGTGGTCCAGTCTCtgacggtggag
gccctgAACGGGGCATGA

Synonyms

Publications