rna1378, rna1378 (mRNA) Nannochloropsis gaditana

Overview
Namerna1378
Unique Namerna1378
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1644
Alignment locationCM002457.1:478465..479081 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100029g47.9532.mrna
Orig protein idgnl|cribi|Naga_100029g47.9532
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:478465..479081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100029g47gene1332Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1378rna1378-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29275.1cds1376Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1378 ID=rna1378|Name=rna1378|organism=Nannochloropsis gaditana|type=mRNA|length=1644bp
ATGAGCCCTCATGTATCAAAGCTGAAAGGCTCAAAAAGACCCCGGCGAGA
AAGCGCAGAACCCAGCCGTAAAAGTGAGCGTGGACAGAAGATGCGCAAAT
CAGAGTCGTATCAGCAGCTGGAAAACATGATGTTCTCTGACACGTTAATC
GAGCCAGCTCTTCGAGCCTTTCCTGACAGCGTCGCGGCTGCAATCGAATA
TATTTTGGCCCTGCAGGCGGATCATGCTCATCTCGACGCTGGAAGTGAGC
AGAGCGTCTCACAGCAAAGCGAATCTGGAGGCAAAAAGGAGAAATTAAAG
GATGAAAAGGAGGTGAAAAGGAGAAGGGGGACCCGTGACACTATGGGGAG
CAGCGCTTCGAAGGAAAGGTTGAGAGGATTAAAGAATATGAGGCATCTCG
CAGCCAATGTTATACCAGATAGATGCGAAGAAAGGTCGATACATCTACAG
CAACCAAAAACGCCTTCGCCGTCAGCGGCAGCGCACCAGAGCGAAGGGCA
ACTTTCTGAAGGGACACAAAAGGGGCCAGAGAGAAGCACAAATGCAAGAA
ATCACGAAAGTAATGTCCAAAAAATGGTGATTAATGGGAGTGAAGGATGT
GTGGATGCAAGTGTCGTGAGCTCAGATAAGCAAACAGAGCAGAAATTTGA
CTTGATGCCACGGGCGCCGCCTTCATCTCCGTGTGTCGTCAAGGGGAGCT
TCCAAGAAGGAACAGACGAGAAGTGCGTCGACAAAGAAGCCCACCGGGAC
GAGAAAATGCCCCGCAGAAGAAGTCTACGCGGGCAAATACCGTACAGGAA
GCGGCTTTGCGCGCCTTCTGATCCACCATCAGCAGCTCCCACGACAGTCG
ACACTCACCCGTGCGTGGACGAGGCGAGTAGGAACCAGGAGAGGCAAGAC
AGACGTACAACGCCAACAAGTGAGCCGCTGGTCACACATGAGGAACCTCA
CTTGACTGAGCAGGAGCACAAAGTTTTGGCACTGCGCGACGAATTATTGG
AGGAGGATACGGTCCTTGCATCCGTTGCTTCCACCCCTGGCGCTAACGTG
TCTACAAACCCTCCGCTCGACAACTCGGCTGTTTCATTTGCAATATCGAC
CGCGCCAGAAAGAGAACGGAAACGCTGGCGAGGGTCTCAAGGCGGGACGG
GCGAAGGAACGCAAGAAAACGGAGACAAGGCAGGTGGGGCAGCTCTGACG
GCGAAAGGGAATTTGCAGGATTTCTTACCGAGGGAAGACCTCTGTACTCC
AGTATCTCCCAGTAGTCATCGGTCAACAAGTGTCGGCCATGCCTCGGCTA
GCTCCGGTATTGCTTCCTCAGATCATACACTGAAAAGTTGTTCGATAGAG
AGACAGGAGAATAAGAGTGGTGGAGACGACAAGGACGCGCAGTTCACATG
TCAAGGTAAATTTGGCAGGAAATCAGAGGCATCCCGCGAGAATAATCAAG
AGGATAGCACCAGCAATTTAACTCTCGACAATGCTTCACCGTGTGGCGGG
AGTCGACACGCGGAAGGAGAAGATCCCAGCGATTTTTACTACCTTCTTTC
ACAAGCCTCTGAGGGGCGGCAACGTCGCGGCGATCCTGTCTCAATCATTA
AGAGCCAGATCCCCAGCAAGCGAGAAGAGCGGGGGAGGTGGTAG
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protein sequence of rna1378

>rna1378-protein ID=rna1378-protein|Name=rna1378|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MSAMDVGNGRRSLKVGEEKGHPGRNLRSHFLINVSKESWKAILAFDTPIH
IANKLSGILVESLFPLAKPNPLKVEKCMMKSIFRNYVCLLLPKMLLFELL
LDP
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mRNA from alignment at CM002457.1:478465..479081+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1378 ID=rna1378|Name=rna1378|organism=Nannochloropsis gaditana|type=mRNA|length=617bp|location=Sequence derived from alignment at CM002457.1:478465..479081+ (Nannochloropsis gaditana)
ATGTCTGCGATGGATGTTGGTAATGGACGACGATCGTTGAAAGTGGGTGA
GGAAAAAGGGCATCCGGGTCGgtgagggggcgaggaggagggaggggcga
ggaagcagcTGCCAGTGGCAGAGAGGGCCAGAGGTCGTACGGAAGACTTT
CGTCGGCTAACGTGGTTGTCACGTTTTCTTCTTCACGGGATTTTCCACCT
TGCCGTTCAATATGAATTTGTATCGTTGTTAACCGTAATTTTTATTTAAG
CTAATTTGcacctctcttccttttttcacTTACGAGTagttaacctcctc
ctccttgcgcaACTCTCCGCCGTCACGTTAGAGCGCATTCATGACAATTT
CAAAACTAGAGTACACTATAACACAGAAACTTACGGTCACATTTTTTAAT
CAACGTCTCTAAGGAGTCTTGGAAAGCGATTTTGGCATTCGACACACCAA
TTCACATTGCGAACAAGTTGTCCGGCATACTTGTGGAGAGCTTGTTTCCC
TTAGCCAAGCCGAATCCTTTGAAGGTGGAAAAATGCATGATGAAGTCTAT
TTTCCGCAATTATGTTTGTTTACTTTTACCCAAGATGCTACTTTTCGAGC
TGCTCTTGGACCCCTAA
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Coding sequence (CDS) from alignment at CM002457.1:478465..479081+

>rna1378 ID=rna1378|Name=rna1378|organism=Nannochloropsis gaditana|type=CDS|length=624bp|location=Sequence derived from alignment at CM002457.1:478465..479081+ (Nannochloropsis gaditana)
ATGTCTGCGATGGATGTTGGTAATGGACGACGATCGTTGAAAGTGGGTGA
GGAAAAAGGGCATCCGGGTCGAAACTTACGGTCACATTTTTTAATCAACG
TCTCTAAGGAGTCTTGGAAAGCGATTTTGGCATTCGACACACCAATTCAC
ATTGCGAACAAGTTGTCCGGCATACTTGTGGAGAGCTTGTTTCCCTTAGC
CAAGCCGAATCCTTTGAAGGTGGAAAAATGCATGATGAAGTCTATTTTCC
GCAATTATGTTTGTTTACTTTTACCCAAGATGCTACTTTTCGAGCTGCTC
TTGGACCCCTAAATGTCTGCGATGGATGTTGGTAATGGACGACGATCGTT
GAAAGTGGGTGAGGAAAAAGGGCATCCGGGTCGAAACTTACGGTCACATT
TTTTAATCAACGTCTCTAAGGAGTCTTGGAAAGCGATTTTGGCATTCGAC
ACACCAATTCACATTGCGAACAAGTTGTCCGGCATACTTGTGGAGAGCTT
GTTTCCCTTAGCCAAGCCGAATCCTTTGAAGGTGGAAAAATGCATGATGA
AGTCTATTTTCCGCAATTATGTTTGTTTACTTTTACCCAAGATGCTACTT
TTCGAGCTGCTCTTGGACCCCTAA
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Synonyms
Publications