rna1375, rna1375 (mRNA) Nannochloropsis gaditana

Overview
Namerna1375
Unique Namerna1375
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1677
Alignment locationCM002457.1:471702..472250 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100152g14.723.mrna
Orig protein idgnl|cribi|Naga_100152g14.723
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:471702..472250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100152g14gene1329Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1375rna1375-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29305.1cds1373Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1375 ID=rna1375|Name=rna1375|organism=Nannochloropsis gaditana|type=mRNA|length=1677bp
ATGCGACGGACCTTATGTCCAGGAGCAGGCCAGAGCCTGGGTGGGATTCG
GGCCGCCGTTACACGCACGAATATAATATGCAATTTGCATGTGATTTCGA
ACGAGCTTCGAAGGCAGCAACATCAGCATATCACCGTGGTAATGCGTTTT
TTAGCCAGCGATGCCAACTGTCTACTCAAGCGAAGCTTTCAGGGTTACAA
CGAAGAGTGGCGCCCGCCTCCCTTGGCTGCTGCTGCCATTTTAAGTTTAA
GTCCCACAGCTTCGAATGCTACCAACGAGGCACAAATGGCTGACAAACCG
GGACGTCGACGATGGATGCACCTTTTCAAGGCATTTCTTCGGGCGTGTCA
AGTGACTCTGGTCATGAGCCCACTACTGGCGACGTTGCCTATTGTGTATG
TGACGCGTCATATATTTCCCCGGCTTCGTCGTGGATGGTGGGCTTGCGCC
CTGTGGTCTATCGAGGCTCTGGGCCCCTGCATGGTCAAGTTCATGCAATG
GGCAAGCACCCGCCGGGACATTCTTGCGCCTGAAGTGTGTGACCTCTTGG
AACCAATTCAGTGGCAGACTCGCCCTCATACGTGGGCGCAGACCAAGCAA
GCTTTGAGCACGCTTCGCGCTGACTGGGCCGATGTTCTGTGCATTGACAC
AGATAAATCGGCTATGGTGGGATCGGGCTCTGTGGCTCAGGTGTATCGTG
CCACAACCACTGCGCGGCTTGCTGACGACGCAAGAGACGCCACAGCACCG
CCCCCGGCGCCCCGTGTGGTGGCCGTCAAGGTGATTCACCCTGGGGTAAA
GAGACAGATCGAGGCCGACTTGGAGCTTCTGCGGATAGGGGCATGGCTGG
TGGAGGCGACGGGTCATTTGCAGTGGTGGAGTGTGTGTGATTTTGTGGAG
GAGTTCGCCCAGATCATGCACAAGCAACTGGACTTACGCTGCGAAGCAGA
AGCCCTGGATCGCTTTCGCGCCAATTTCGCGGGCCGCACCGACATCATGT
TTCCCCGTCCTTCCTGGCCTCTGGTTAACGAGTTTGTCTTAGTTGAGGAC
TACGTAAGCGGTGTCCCGATTTCGAATATATTGAAGGATCCCGCCTGGCC
GGTGCAGGAGAAGAAGGCGATCGCTCGTTCCGGCCTTGACGCCTTTTTGA
AAATGGTGTTTCTTGACAATTTTGTTCATGGAGATTTGCATCCAGGGAAC
ATATTTGTGCGGCACGACACGGAGGCTCACAAGGCCAAGCCACATTTAAC
GTTCATCGACGCTGGGATCGTGACAGAGCTGACGCAACAGGATCGCCGGA
ATTTTGTGGATCTTTTCTATGCCATCGCTACGGGTCAAGGGGAAGCGGCG
GGACGGCTTATGATCGAACGGTCCCGACGCCATGAGTGCCAAGACCCTGA
GGGCTTCTGCCGGGGTATCTCGAGAATCGTGGAGGAGGCGACAGCGGGGC
AGCACTTGCGGTTGGGGAAGATCCGCGTCGGCTTCTTGATCCAGAAAGTA
TTGGCCCTGTGTATCCAGTACAAGGTGAAACTGGAAAGCAATTTTGCGTC
CATTTTGCTGGCGATTGGAGTTCTGGAGGGCGTGGGTCGAAGCTTGGACC
CTGAGCTGGACATCTTGGCCGCGGCAACCCCAGTCATTTTAAAAAGCCGG
TACTTTCAAACCAAAAAAGAAGATTAG
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protein sequence of rna1375

>rna1375-protein ID=rna1375-protein|Name=rna1375|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MYVSSVLNGSTDIEGVSWFWKSDDGHKVSESAIWLTKHVLLYIHDGGRGN
SGPYSALSSLLCIHFGTIWLRLDVKFAVRRVVYIVISPLPVMTVVHRLLR
QNTSLLATRAAQQRPITFYHRRETISSYAIIYAMLDVVNYIINVDPIGRG
FMRSPCAIKCSW
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mRNA from alignment at CM002457.1:471702..472250+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1375 ID=rna1375|Name=rna1375|organism=Nannochloropsis gaditana|type=mRNA|length=549bp|location=Sequence derived from alignment at CM002457.1:471702..472250+ (Nannochloropsis gaditana)
ATGTACGTCTCAAGTGTGTTAAACGGATCGACGGATATTGAAGGAGTAAG
CTGGTTTTGGAAATCCGATGACGGCCACAAGGTATCAGAATCGGCTATTT
GGTTGACTAAACACGTTTTGCTGTACATACATgatggtggaagagggaat
aGCGGGCCGGTGGAGGATGAAAGGTAACATGTAGCTTGTACTCCGTTCAA
ATTTATAGAGGTGTACAAGTACAGCGCATTGTCTTCGTTGCTATGTATTC
ATTTCGGCACAATATGGCTGAGACTTGACGTGAAATTCGCAGTGCGACGA
GTAGTGTACATTGTAATATCCCCTCTTCCGGTGATGACGGTTGTCCACCG
ACTCTTGAGACAAAATACTTCCTTGTTAGCAACTAGAGCCGCGCAGCAAC
GACCTATCACTTTCTATCATAGGCGTGAGACCATTTCCTCCTATGCAATT
ATCTACGCGATGCTTGATGTGGTAAACTATATCATCAACGTCGATCCAAT
AGGTCGTGGCTTCATGCGCTCCCCCTGTGCGATAAAATGCAGTTGGTAG
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Coding sequence (CDS) from alignment at CM002457.1:471702..472250+

>rna1375 ID=rna1375|Name=rna1375|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at CM002457.1:471702..472250+ (Nannochloropsis gaditana)
ATGTACGTCTCAAGTGTGTTAAACGGATCGACGGATATTGAAGGAGTAAG
CTGGTTTTGGAAATCCGATGACGGCCACAAGGTATCAGAATCGGCTATTT
GGTTGACTAAACACGTTTTGCTGTACATACATgatggtggaagagggaat
aGCGGGCCGTACAGCGCATTGTCTTCGTTGCTATGTATTCATTTCGGCAC
AATATGGCTGAGACTTGACGTGAAATTCGCAGTGCGACGAGTAGTGTACA
TTGTAATATCCCCTCTTCCGGTGATGACGGTTGTCCACCGACTCTTGAGA
CAAAATACTTCCTTGTTAGCAACTAGAGCCGCGCAGCAACGACCTATCAC
TTTCTATCATAGGCGTGAGACCATTTCCTCCTATGCAATTATCTACGCGA
TGCTTGATGTGGTAAACTATATCATCAACGTCGATCCAATAGGTCGTGGC
TTCATGCGCTCCCCCTGTGCGATAAAATGCAGTTGGTAGATGTACGTCTC
AAGTGTGTTAAACGGATCGACGGATATTGAAGGAGTAAGCTGGTTTTGGA
AATCCGATGACGGCCACAAGGTATCAGAATCGGCTATTTGGTTGACTAAA
CACGTTTTGCTGTACATACATgatggtggaagagggaataGCGGGCCGTA
CAGCGCATTGTCTTCGTTGCTATGTATTCATTTCGGCACAATATGGCTGA
GACTTGACGTGAAATTCGCAGTGCGACGAGTAGTGTACATTGTAATATCC
CCTCTTCCGGTGATGACGGTTGTCCACCGACTCTTGAGACAAAATACTTC
CTTGTTAGCAACTAGAGCCGCGCAGCAACGACCTATCACTTTCTATCATA
GGCGTGAGACCATTTCCTCCTATGCAATTATCTACGCGATGCTTGATGTG
GTAAACTATATCATCAACGTCGATCCAATAGGTCGTGGCTTCATGCGCTC
CCCCTGTGCGATAAAATGCAGTTGGTAG
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Synonyms
Publications