rna1374, rna1374 (mRNA) Nannochloropsis gaditana

Overview
Namerna1374
Unique Namerna1374
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1347
Alignment locationCM002457.1:469948..471624 +

Link to JBrowse

Properties
Property NameValue
Productputative aarf domain-containing protein kinase 2
Orig transcript idgnl|cribi|Naga_100152g13.727.mrna
Orig protein idgnl|cribi|Naga_100152g13.727
GeneABC1
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:469948..471624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ABC1gene1328Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1374rna1374-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29309.1cds1372Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1374 ID=rna1374|Name=rna1374|organism=Nannochloropsis gaditana|type=mRNA|length=1347bp
ATGCGTCTTTTTCCTGCTCAAGGCATCCCATGTCATTCACTCACAGTAAA
ACAGGCCAACTGTTTGACGCACGCGTGCTTTGGCCCGACGGGGGTCTATC
TTCTCGTCGTTGCAATGCGTCTCCCCTTCCATTGCTGTTGCCTCCTAGGG
TGGTTGACAACCCTCATCATGACCCATGCCTTCGTCAGTCCTAACCTGGT
AATGCCGTCCGGGCGCTCAATATCAAGAAGATATAAAGATTGGGTGTCGA
TGACCCTAGATCCTTTTGTACAGACCAAACTGGAGAGTTTTTCACGCACA
TACAAGGAACTCACTGAGCGCCTGGGGGACCCCGACGTTATTGCCAACCC
TACGACATTGATGCAAGTAAATCAGGAACGGATGAACATTGAAGAAGTGG
TCGTGAGCTATCAAGAGTGGCAGAAGCTTGCTGCAGACATGGCAGGGGCG
AAACAGCTCTTTAACGAGGCCGCGGGAGACCCCGAAATGAAGGAAATGGC
CCGCGCGGAGATTAAAGACTTGGAGGAGAGACAAGAGGACATTGAAAAGC
AACTGGTGGTCCTGATGCTGCCTTCTGACCCATTGGACGACAAGAATGTC
ATGCTTGAAATTCGGGCAGGCACGGGCGGTAGCGAGGCCGGGCTTTTCGC
GGGGGATCTAGTCGACGTGTACCAGCGTTACGGGCAGAGCCTGGGGTGGC
GCGTCCGCGTCGTCGAGGACTCCAGAAATGACGAGGGCGGATACAAGAAT
GCAGTGCTGGAGATCCAGGGCGACAAAGTCTATTCAAAGCTCAAATTTGA
GGCAGGGGTGCACCGAGTGCAACGCGTACCGGCTACCGAGACTCAGGGCC
GCGTGCACACAAGTACGGCGACGGTGGCTGTGATGCCCGAGGTGGACGAG
GTGCAAGTGAAAATAGACCCGAAGGACATTACCCTGACGACTGCTCGCTC
CGGTGGCTCAGGAGGGCAGAACGTGAACAAGGTAGAGACCGCGGTGGACT
TGCTGCACAAGCCGACGGGCATTCGGATTTTTTGCACACAAGAGAGGTCA
CAACTCAAGAATAAGGAGCTCGCCATGTCGATGCTGCGGTCGCGCTTGTT
CGATCTGGAACAGGAGAAACAAAGGGATGCGGTGGCAGGCCAGCGACGCT
CCCAGATCGGCTCGGGCAGTCGTTCGGAGAAGATAAGGACGTACAATTGG
AAGGACAGCCGATGCACGGACCACCGACTCGGCACGAACTTCCCTTTACA
GATGTTCCTGGACGGGAATCTGGAGGAGATTACCAATCAGTGTTTGTTGT
TGGAGCAACAGGAAAAGTTGGAGGCAATGCAATTGACGAACGCATAG
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protein sequence of rna1374

>rna1374-protein ID=rna1374-protein|Name=rna1374|organism=Nannochloropsis gaditana|type=polypeptide|length=558bp
MRRTLCPGAGQSLGGIRAAVTRTNIICNLHVISNELRRQQHQHITVVMRF
LASDANCLLKRSFQGYNEEWRPPPLAAAAILSLSPTASNATNEAQMADKP
GRRRWMHLFKAFLRACQVTLVMSPLLATLPIVYVTRHIFPRLRRGWWACA
LWSIEALGPCMVKFMQWASTRRDILAPEVCDLLEPIQWQTRPHTWAQTKQ
ALSTLRADWADVLCIDTDKSAMVGSGSVAQVYRATTTARLADDARDATAP
PPAPRVVAVKVIHPGVKRQIEADLELLRIGAWLVEATGHLQWWSVCDFVE
EFAQIMHKQLDLRCEAEALDRFRANFAGRTDIMFPRPSWPLVNEFVLVED
YVSGVPISNILKDPAWPVQEKKAIARSGLDAFLKMVFLDNFVHGDLHPGN
IFVRHDTEAHKAKPHLTFIDAGIVTELTQQDRRNFVDLFYAIATGQGEAA
GRLMIERSRRHECQDPEGFCRGISRIVEEATAGQHLRLGKIRVGFLIQKV
LALCIQYKVKLESNFASILLAIGVLEGVGRSLDPELDILAAATPVILKSR
YFQTKKED
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mRNA from alignment at CM002457.1:469948..471624+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1374 ID=rna1374|Name=rna1374|organism=Nannochloropsis gaditana|type=mRNA|length=1677bp|location=Sequence derived from alignment at CM002457.1:469948..471624+ (Nannochloropsis gaditana)
ATGCGACGGACCTTATGTCCAGGAGCAGGCCAGAGCCTGGGTGGGATTCG
GGCCGCCGTTACACGCACGAATATAATATGCAATTTGCATGTGATTTCGA
ACGAGCTTCGAAGGCAGCAACATCAGCATATCACCGTGGTAATGCGTTTT
TTAGCCAGCGATGCCAACTGTCTACTCAAGCGAAGCTTTCAGGGTTACAA
CGAAGAgtggcgcccgcctcccttggctgctgctgccatttTAAGTTTAA
GTCCCACAGCTTCGAATGCTACCAACGAGGCACAAATGGCTGACAAACCG
GGACGTCGACGATGGATGCACCTTTTCAAGGCATTTCTTCGGGCGTGTCA
AGTGACTCTGGTCATGAGCCCACTACTGGCGACGTTGCCTATTGTGTATG
TGACGCGTCATATATTTCCCCGGCTTCGTCGTGGATGGTGGGCTTGCGCC
CTGTGGTCTATCGAGGCTCTGGGCCCCTGCATGGTCAAGTTCATGCAATG
GGCAAGCACCCGCCGGGACATTCTTGCGCCTGAAGTGTGTGACCTCTTGG
AACCAATTCAGTGGCAGACTCGCCCTCATACGTGGGCGCAGACCAAGCAA
GCTTTGAGCACGCTTCGCGCTGACTGGGCCGATGTTCTGTGCATTGACAC
AGATAAATCGGCTATGGTGGGATCGGGCTCTGTGGCTCAGGTGTATCGTG
CCACAACCACTGCGCGGCTTGCTGACGACGCAAGAGACGCCACAGCACCG
CCCCCGGCGCCCCGTGTGGTGGCCGTCAAGGTGATTCACCCTGGGGTAAA
GAGACAGATCGAGGCCGACTTGGAGCTTCTGCGGATAGGGGCatggctgg
tggaggcgacgggTCATTTGCAGTGGTGGAGTGTGTGTGATTTTGTGGAG
GAGTTCGCCCAGATCATGCACAAGCAACTGGACTTACGCTGCGAAGCAGA
AGCCCTGGATCGCTTTCGCGCCAATTTCGCGGGCCGCACCGACATCATgt
ttccccgtccttcctggcctctgGTTAACGAGTTTGTCTTAGTTGAGGAC
TACGTAAGCGGTGTCCCGATTTCGAATATATTGAAGGATCCCGCCTGGCC
ggtgcaggagaagaaggcgatcGCTCGTTCCGGCCTTGACGCCTTTTTGA
AAATGGTGTTTCTTGACAATTTTGTTCATGGAGATTTGCATCCAGGGAAC
ATATTTGTGCGGCACGACACGGAGGCTCACAAGGCCAAGCCACATTTAAC
GTTCATCGACGCTGGGATCGTGACAGAGCTGACGCAACAGGATCGCCGGA
ATTTTGTGGATCTTTTCTATGCCATCGCTACGGGTCAAGGGGAAGCGGCG
GGACGGCTTATGATCGAACGGTCCCGACGCCATGAGTGCCAAGACCCTGA
GGGCTTCTGCCGGGGTATCTCGAGaatcgtggaggaggcgacagcGGGGC
AGCACTTGCGGTTGGGGAAGATCCGCGTCGGCTTCTTGATCCAGAAAGTA
TTGGCCCTGTGTATCCAGTACAAGGTGAAACTGGAAAGCAATTTTGCGTC
CATTTTGCTGGCGATTGGAGTTCTGGAGGGCGTGGGTCGAAGCTTGGACC
CTGAGCTGGACATCTTGGCCGCGGCAACCCCAGTCATTTTAAAAAGCCGG
TACTTTCAAACCAAAAAAGAAGATTAG
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Coding sequence (CDS) from alignment at CM002457.1:469948..471624+

>rna1374 ID=rna1374|Name=rna1374|organism=Nannochloropsis gaditana|type=CDS|length=1677bp|location=Sequence derived from alignment at CM002457.1:469948..471624+ (Nannochloropsis gaditana)
ATGCGACGGACCTTATGTCCAGGAGCAGGCCAGAGCCTGGGTGGGATTCG
GGCCGCCGTTACACGCACGAATATAATATGCAATTTGCATGTGATTTCGA
ACGAGCTTCGAAGGCAGCAACATCAGCATATCACCGTGGTAATGCGTTTT
TTAGCCAGCGATGCCAACTGTCTACTCAAGCGAAGCTTTCAGGGTTACAA
CGAAGAgtggcgcccgcctcccttggctgctgctgccatttTAAGTTTAA
GTCCCACAGCTTCGAATGCTACCAACGAGGCACAAATGGCTGACAAACCG
GGACGTCGACGATGGATGCACCTTTTCAAGGCATTTCTTCGGGCGTGTCA
AGTGACTCTGGTCATGAGCCCACTACTGGCGACGTTGCCTATTGTGTATG
TGACGCGTCATATATTTCCCCGGCTTCGTCGTGGATGGTGGGCTTGCGCC
CTGTGGTCTATCGAGGCTCTGGGCCCCTGCATGGTCAAGTTCATGCAATG
GGCAAGCACCCGCCGGGACATTCTTGCGCCTGAAGTGTGTGACCTCTTGG
AACCAATTCAGTGGCAGACTCGCCCTCATACGTGGGCGCAGACCAAGCAA
GCTTTGAGCACGCTTCGCGCTGACTGGGCCGATGTTCTGTGCATTGACAC
AGATAAATCGGCTATGGTGGGATCGGGCTCTGTGGCTCAGGTGTATCGTG
CCACAACCACTGCGCGGCTTGCTGACGACGCAAGAGACGCCACAGCACCG
CCCCCGGCGCCCCGTGTGGTGGCCGTCAAGGTGATTCACCCTGGGGTAAA
GAGACAGATCGAGGCCGACTTGGAGCTTCTGCGGATAGGGGCatggctgg
tggaggcgacgggTCATTTGCAGTGGTGGAGTGTGTGTGATTTTGTGGAG
GAGTTCGCCCAGATCATGCACAAGCAACTGGACTTACGCTGCGAAGCAGA
AGCCCTGGATCGCTTTCGCGCCAATTTCGCGGGCCGCACCGACATCATgt
ttccccgtccttcctggcctctgGTTAACGAGTTTGTCTTAGTTGAGGAC
TACGTAAGCGGTGTCCCGATTTCGAATATATTGAAGGATCCCGCCTGGCC
ggtgcaggagaagaaggcgatcGCTCGTTCCGGCCTTGACGCCTTTTTGA
AAATGGTGTTTCTTGACAATTTTGTTCATGGAGATTTGCATCCAGGGAAC
ATATTTGTGCGGCACGACACGGAGGCTCACAAGGCCAAGCCACATTTAAC
GTTCATCGACGCTGGGATCGTGACAGAGCTGACGCAACAGGATCGCCGGA
ATTTTGTGGATCTTTTCTATGCCATCGCTACGGGTCAAGGGGAAGCGGCG
GGACGGCTTATGATCGAACGGTCCCGACGCCATGAGTGCCAAGACCCTGA
GGGCTTCTGCCGGGGTATCTCGAGaatcgtggaggaggcgacagcGGGGC
AGCACTTGCGGTTGGGGAAGATCCGCGTCGGCTTCTTGATCCAGAAAGTA
TTGGCCCTGTGTATCCAGTACAAGGTGAAACTGGAAAGCAATTTTGCGTC
CATTTTGCTGGCGATTGGAGTTCTGGAGGGCGTGGGTCGAAGCTTGGACC
CTGAGCTGGACATCTTGGCCGCGGCAACCCCAGTCATTTTAAAAAGCCGG
TACTTTCAAACCAAAAAAGAAGATTAG
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Synonyms
Publications