rna1372, rna1372 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1372
Unique Name	rna1372
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2064
Alignment location	CM002457.1:466513..468198 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100152g11.728.mrna
Orig protein id	gnl\|cribi\|Naga_100152g11.728
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:466513..468198 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100152g11	gene1326	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1372	rna1372-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29310.1	cds1370	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:466513..468198+
coding sequence from alignment at CM002457.1:466513..468198+

mRNA sequence

>rna1372 ID=rna1372|Name=rna1372|organism=Nannochloropsis gaditana|type=mRNA|length=2064bp
ATGCTGGCCAAGGGCTTCCCAGTGGTGGCGGTGGTCGTATCATCACCAGA
CAAGGGCAACGGACAGATGAGTGGCCTGCCGGACGACGCAATTGCGAGGG
CAAAGGCCATCGCTGCTCGCCTCACAGCAAGCCTGGGTCCCGAGGGTGGG
GGTGGAGGTACTAAACGACGTTTTGGGGACGGGGAATCGGAAGAGCCGCG
GAAGCGGGAGAAGATTTTTATCCCGAAAGACAATCCTGATTTCAACTTCT
TCAGCTTGTTGATTGGTCCCCGGGGATCAACGCAAAAACGTCTTCAGGAA
AACACCGGGGCGCGAATTAACATCCGTGGCTCGGACGGTTCGAAAGGGGA
AGAGGCACCTGAAGGAGAACCGCAAGAGGATATGCACGTGCTGATCGAAG
GCACGGAGGAGCAGGTAGCAGCCGCCAAGAAGGAAGTGGAGAAGATTTTA
TTCGACCCCGCCGAAGCCATGCGTCTCAAGGCGGCGCAACTGCGGAACCT
GGCTGAATTGAAAGGTGGCTACTCGCCCGGCGGCAGCGCGAGTGGGGGGG
GCGGTGACGAAGGACATTATGGCCCCGTGCGCTCCAAGCCGGGCCTGGGG
TTCGGGGCGGAACCGGAGACGGGGGACATGAAGATACCCTCGAGCATGGT
CGGGCTGGTGATCGGACGAGGGGGTGAAAACATCCAAAAAATCACGGCTA
AAACGGGCTGCTTTGTGCAGGTGTCGAAGGAGACGGAGCCGGGCGAGAAC
ACGCGTGCGGTGAGTGTGAAAGGCCCCACCAAGGAGGGCGTGGCGGAGGC
GCTGCAAATGATCCAGGGGCAGAGTTCCGAGTACGGGGTTGCGGCGACCC
TCACAGTGCCGGTGCCCTCGGACAAAGTCGGGCTTATCATCGGCCGGGGC
GGAAGCACCATCCGGACCATTCAGGAGCGGACAGGCGCCAACGTGAACAT
CCCCAGCGCCAACCAAGGGGACGAGCCCAACGTCCGCCTTGTCACGGTCT
CGGCGCCGGACATGCAGGCGGCCGAACATGCTCGGTCCGAGATTCAGGCC
CTGTTGGCCGGGGGGCCTGGGGGGGGGGGAGCAATGGGAGGGGGGGCGCC
TCAGGGGGGCACGGCGCTTGTCATGCACATCGACCAGGACAAAGTGGGGC
TGATCATCGGCCGGTCCGGGGCGGTCATCAAGGAGATTCAGCACCGCACC
AATACGCGCATTCAGGTGCCTACCACCGCCGAGCCCAACACCCATCCCCC
CGTGCGGGCTGTCACCATCATGGGACCCGGCGACGGACCGGAACGGGCGC
GCTACGAGATTGAAACCAAGCTAATGAACGAAGGTTGCCGAGACGCCCAC
GGCAACTACATCCCCTACCAGCCTAGCCCCGCCTTTATCGTCCCCGTCGG
TCCCGGCGGCGTGCCCATCATGCCGGGGGCGGCTCCTCCCCCTCCGCCCC
AGGGGGGGGGTTACTACCCTCCTCCCCCGGGCTATCAGCCCCAGCAGCCA
CCCCCGCCCGGATATCCACCCCCTGGATACCCGCAGCAGCCTGCGCAGTC
AGATCCTTACGCCGCTTACTACCAGCAACAACAGAACCAGGGCCCCAGTC
CCGCGCAGCAGCAACAACAACAGCAGCAACAACAACAACAACCACAACAT
CAACCACAACATCAACCACAGCCTCAACAGCCGCAGCAACAGCCAGCATA
TGCTTCGCAAACGAACGGTGGTGATGCCGCCGCTGCACAACAACAACAAC
AACAGGCTGCTCCTGCTCCCGCTCCAACATCAAGCTCTGACTCGGCGAGT
AATGGAGCAGTTGGAGGTGAAGCAGCTTATGATCCCACTCAATACTGGGA
TCAATTCTGGGCATACGCTGTGCACTATGGAGAAGAATACGCGCGCAAGC
AGTACGGCACGTGGGCACCGCCTGAAGGCCATGGCCGCCATCGCGGCACT
GGGTCAGACATCTTAGAACTGGGTGACTACAAAAATGGTGGAAACGGAAG
AATAATTGACCACCGAAATCGAGTTCTTCAGGGTTCACGAGGAAAGTGTG
GTGAAGAGACATAA

protein sequence of rna1372

>rna1372-protein ID=rna1372-protein|Name=rna1372|organism=Nannochloropsis gaditana|type=polypeptide|length=561bp
MPGSKSFSSVGRKHFRKCVGQEIETADRDEGSPCYGHQISTSSDKTAQVA
CDLPNSHREKDMKSSSRILSVRDNVPNPPANNSPPLTFEAPSKAEQSPVF
SKVKTTEGRSAPSIVPSLSSFSRSASNVAASTEFKRSISNMGDKIRDTST
SEMTPMRRLFSRGISNIKDQVGSLLGEEPIVGAVRRYTRAHKQILGEYPL
GMPPRPKPEDLSELDKTFGDWLKEHDLLDLVAVFVLFPLMLSYQCLMEMP
AFYGLWCYHPQRVMGLVDSRRGTLKLPRYTVLKCGWQTLWTHIAVIEGLH
VHLNSTIKSIRRPWMGKKGLLVVESRESSCATGAVTPDKICSGKVPGPKM
HEFDLIVIACSLKTAVPLFVDASHEERQLASSLEEYALCSTMFESDIIPG
ERPIELFPFPKRGGASGQVFAQFNSRLLVRKLPDEAAPQVEWGCVEAPTA
CKGASPAKDPRIVFQFLHRAPSAADVKMLRRRLEMFFDDQSFNEPTILKQ
CLWKFFPHFPTKALLESGWPWRLQKLQGHNSTLYLGASACMDALEEVLLY
NDAVVQRLFPS

mRNA from alignment at CM002457.1:466513..468198+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1372 ID=rna1372|Name=rna1372|organism=Nannochloropsis gaditana|type=mRNA|length=1686bp|location=Sequence derived from alignment at CM002457.1:466513..468198+ (Nannochloropsis gaditana)
ATGCCTGGATCGAAAAGCTTTTCATCAGTCGGGAGGAAACACTTTCGTAA
GTGTGTCGGGCAAGAAATTGAGACTGCCGACAGGGACGAAGGTAGCCCTT
GTTATGGACACCAaatctccaccagctccgaCAAGACGGCTCAAGTAGCT
TGTGACTTACCCAATAGCCATAGAGAAAAAGACATGAAAAGCTCTTCACG
CATTCTAAGTGTCCGCGACAATGTTCCCAACCCGCCGGCCAACAattctc
ctcccttgaccTTCGAGgcgccctccaaggccgagCAGAGCCCTGTCTTT
AGTAAGGTAAAGACCACGGAGGGGCGTTCTGCTCCATCCATCGTCCCATC
ACTTTCCTCATTTTCCCGGTCCGCATCAAATGTGGCAGCCAGCACCGAGT
TCAAGCGCAGCATAAGTAACATGGGTGACAAGATCCGCGACACCTCCACG
TCAGAAATGACTCCCATGCGTCGGCTCTTTTCCCGTGGTATTTCGAACAT
CAAAGACCAGGTCGGCTCGCTTCTCGGAGAAGAACCCATTGTGGGGGCTG
TACGCCGCTATACACGTGCACACAAACAGATCCTTGGAGAATACCCTCTT
GGCATGCCCCCCCGTCCTAAGCCCGAAGACCTGTCTGAGCTGGACAAAAC
TTTCGGAGATTGGCTCAAAGAGCACGACCTTCTAGACCTCGTTGCTGTCT
TTGTGCTGTTTCCTCTTATGTTAAGTTACCAATGTCTTATGGAAATGCCG
GCCTTCTATGGGCTGTGGTGTTATCATCCTCAGCGTGTGATGGGCCTTGT
TGACAGTCGCAGAGGTACGCTGAAGCTGCCTCGTTACACGGTTCTTAAAT
GTGGATGGCAAACTTTGTGGACTCACATTGCAGTTATTGAAGGTCTTCAT
GTTCATTTAAATTCCACGATTAAGTCCATCCGTCGGCCATGGATGGGTAA
GAAGGGGCTGCTCGTTGTGGAGTCACGAGAATCGTCATGCGCGACAGGTG
CGGTTACTCCAGACAAGATTTGTAGTGGGAAAGTACCCGGGCCAAAGATG
CATGAGTTTGACCTCATTGTTATTGCCTGTAGCCTCAAGACCGCTGTCCC
ACTCTTTGTCGATGCCTCCCATGAGGAGCGCCAGCTCGCATCGTCCTTGG
AAGAATACGCCTTGTGCAGCACGATGTTCGAATCAGACATCATCCCAGGA
GAACGACCTATTGAACTTTTCCCATTTCCCAAACGTGGAGGGGCCTCTGG
CCAAGTATTTGCTCAATTTAACTCGCGCCTGCTCGTACGCAAATTGCCCG
ATGAGGCAGCCCCGCAGGTCGAGTGGGGCTGTGTCGAAGCGCCCACTGCC
TGCAAGGGAGCGTCGCCGGCCAAAGACCCGCGCATTGTGTTTCAATTCCT
TCACCGGGCTCCTAGTGCCGCAGATGTGAAAATGCTGCGGCGAAGACTTG
AAATGTTCTTTGACGATCAATCGTTCAATGAGCCCACCATCCTGAAACAG
TGCCTGTGGAAGTTTTTCCCTCATTTCCCTACAAAGGCCTTACTGGAAAG
TGGATGGCCATGGCGGCTTCAGAAGTTGCAGGGGCATAACAGCACGCTAT
ACCTCGGAGCGAGCGCCTGCATGGACGCCTTGGAGGAAGTGCTTCTGTAC
AATGATGCTGTAGTCCAGCGGCTTTTCCCGTCATGA

Coding sequence (CDS) from alignment at CM002457.1:466513..468198+

>rna1372 ID=rna1372|Name=rna1372|organism=Nannochloropsis gaditana|type=CDS|length=1686bp|location=Sequence derived from alignment at CM002457.1:466513..468198+ (Nannochloropsis gaditana)
ATGCCTGGATCGAAAAGCTTTTCATCAGTCGGGAGGAAACACTTTCGTAA
GTGTGTCGGGCAAGAAATTGAGACTGCCGACAGGGACGAAGGTAGCCCTT
GTTATGGACACCAaatctccaccagctccgaCAAGACGGCTCAAGTAGCT
TGTGACTTACCCAATAGCCATAGAGAAAAAGACATGAAAAGCTCTTCACG
CATTCTAAGTGTCCGCGACAATGTTCCCAACCCGCCGGCCAACAattctc
ctcccttgaccTTCGAGgcgccctccaaggccgagCAGAGCCCTGTCTTT
AGTAAGGTAAAGACCACGGAGGGGCGTTCTGCTCCATCCATCGTCCCATC
ACTTTCCTCATTTTCCCGGTCCGCATCAAATGTGGCAGCCAGCACCGAGT
TCAAGCGCAGCATAAGTAACATGGGTGACAAGATCCGCGACACCTCCACG
TCAGAAATGACTCCCATGCGTCGGCTCTTTTCCCGTGGTATTTCGAACAT
CAAAGACCAGGTCGGCTCGCTTCTCGGAGAAGAACCCATTGTGGGGGCTG
TACGCCGCTATACACGTGCACACAAACAGATCCTTGGAGAATACCCTCTT
GGCATGCCCCCCCGTCCTAAGCCCGAAGACCTGTCTGAGCTGGACAAAAC
TTTCGGAGATTGGCTCAAAGAGCACGACCTTCTAGACCTCGTTGCTGTCT
TTGTGCTGTTTCCTCTTATGTTAAGTTACCAATGTCTTATGGAAATGCCG
GCCTTCTATGGGCTGTGGTGTTATCATCCTCAGCGTGTGATGGGCCTTGT
TGACAGTCGCAGAGGTACGCTGAAGCTGCCTCGTTACACGGTTCTTAAAT
GTGGATGGCAAACTTTGTGGACTCACATTGCAGTTATTGAAGGTCTTCAT
GTTCATTTAAATTCCACGATTAAGTCCATCCGTCGGCCATGGATGGGTAA
GAAGGGGCTGCTCGTTGTGGAGTCACGAGAATCGTCATGCGCGACAGGTG
CGGTTACTCCAGACAAGATTTGTAGTGGGAAAGTACCCGGGCCAAAGATG
CATGAGTTTGACCTCATTGTTATTGCCTGTAGCCTCAAGACCGCTGTCCC
ACTCTTTGTCGATGCCTCCCATGAGGAGCGCCAGCTCGCATCGTCCTTGG
AAGAATACGCCTTGTGCAGCACGATGTTCGAATCAGACATCATCCCAGGA
GAACGACCTATTGAACTTTTCCCATTTCCCAAACGTGGAGGGGCCTCTGG
CCAAGTATTTGCTCAATTTAACTCGCGCCTGCTCGTACGCAAATTGCCCG
ATGAGGCAGCCCCGCAGGTCGAGTGGGGCTGTGTCGAAGCGCCCACTGCC
TGCAAGGGAGCGTCGCCGGCCAAAGACCCGCGCATTGTGTTTCAATTCCT
TCACCGGGCTCCTAGTGCCGCAGATGTGAAAATGCTGCGGCGAAGACTTG
AAATGTTCTTTGACGATCAATCGTTCAATGAGCCCACCATCCTGAAACAG
TGCCTGTGGAAGTTTTTCCCTCATTTCCCTACAAAGGCCTTACTGGAAAG
TGGATGGCCATGGCGGCTTCAGAAGTTGCAGGGGCATAACAGCACGCTAT
ACCTCGGAGCGAGCGCCTGCATGGACGCCTTGGAGGAAGTGCTTCTGTAC
AATGATGCTGTAGTCCAGCGGCTTTTCCCGTCATGA

Synonyms

Publications