rna1364, rna1364 (mRNA) Nannochloropsis gaditana

Overview
Namerna1364
Unique Namerna1364
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length597
Alignment locationCM002457.1:443156..444310 +

Link to JBrowse

Properties
Property NameValue
Producttranscription initiation factor iib
Orig transcript idgnl|cribi|Naga_100152g3.722.mrna
Orig protein idgnl|cribi|Naga_100152g3.722
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:443156..444310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100152g3gene1318Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1364rna1364-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29304.1cds1362Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1364 ID=rna1364|Name=rna1364|organism=Nannochloropsis gaditana|type=mRNA|length=597bp
ATGTGGTGGACTTATCAGACGTCAGGTGCCACGTGTCTCATCCAGTCTCC
GGGGGAGCTCTGCAAAGTAGTTGTGGCGCCGTTTTTCGATTCTTCCTCCC
GCCCTGTATCCTCGTCGACCGTCTTGGGTCCACCTATCTACATGAATCCA
GAGACGTGCTGCAAATGTGGAAGTCTTGATATAATAACAGGTCCGGACAA
CGCGTCGATAAATCAACGAAATGAAACGCGCTTTCTCCTCGAATTGCTGT
CTTGGATGCAGGCGCTACTGGGATTATCCAAGGATGCGAATTGTATCTTT
CCCCTCAATTGTTCCGAGGCAAGACTTCAAAGAGAAGCTCGTTATGCAAA
GCCCCCCTACCCACACTTACCGCGTCCACCGCGCGCCAGCGACAATGTCG
ACGGCAACAGAAACAAAAGAGGAAAAAAAAATCTCCCTTCCCACCCGAAC
CTCGTCGTTCCCTACAATGTCACCGCCCCCCCCCGGTGGGCTCGAAAAGT
AACCCCCCCCCCCTTTGTTGTCACGCAATCATGCGTGGACCTTTCCTGTC
TCTCGCCTGCCCTGACTGGACGCGCCCTGTGCACTGAACACATTTGA
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protein sequence of rna1364

>rna1364-protein ID=rna1364-protein|Name=rna1364|organism=Nannochloropsis gaditana|type=polypeptide|length=384bp
MTDSNGIAALASFGQLAISKHDIHPHLFPPPCGRILFFPFPVDHRSGDVV
CRGCGEVQAERLVDLGAEWNRYDDNDGKGDPSRVGGELGGVASRIWGGTS
ASAPGGRGSQGMGKKRKGQGSAMTGAELANKKSRAQSKLEKVCMLLSDAV
RSLHLDERVTQVGFTVADAANTEGAFRGKPENTLVGAILYLSCKHCGVLK
SIAEVCAQLGLNKFDVGRVINDISRKVKSLEAVVFSPEDVVDKYGGQLRL
PLGLRAAAVEVMKAAKEMPGLEGLHPQSLAGAALLLLSNTKVAPHLVLNS
AAQEKGMMKIEVKDEDLASQALPGLFPPPQRSLEDVTGATLMSTGTIKRA
HSLLYEHREKLVPVAYAAQMFSHRLELRATSELK
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mRNA from alignment at CM002457.1:443156..444310+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1364 ID=rna1364|Name=rna1364|organism=Nannochloropsis gaditana|type=mRNA|length=1155bp|location=Sequence derived from alignment at CM002457.1:443156..444310+ (Nannochloropsis gaditana)
ATGACGGATTCAAATGGGATCGCAGCCCTGGCCTCGTTCGGCCAACTTGC
TATTTCAAAGCATGACAtccatcctcacctttttccccctccctgcggtc
gtattctctttttccccttcccggtAGATCATCGCTCAGGCGATGTCGTG
TGTCGCGGTTGCGGGGAGGTGCAAGCGGAACGATTGGTGGACTTGGGCGC
CGAGTGGAATCGATACGATGACAACGACGGGAAGGGCGACCCTTcccgcg
tgggaggggaactGGGGGGTGTCGCCTCTCGGATTTGGGGCGGCACGTCC
GCCTCTGCgccgggcgggagagggagccagGGCATGGGAAAGAAGCGCAA
GGGACAGGGGTCCGCCATGACGGGCGCAGAACTGGCGAACAAGAAGAGCC
GTGCCCAATCCAAGCTGGAAAAGGTGTGCATGTTGCTCTCGGACGCGGTC
CGATCCCTTCACTTGGACGAGCGCGTCACGCAAGTGGGTTTCACGGTGGC
GGACGCAGCCAACACGGAGGGCGCTTTCCGCGGAAAGCCGGAGAATACTC
TGGTGGGCGCGATCTTGTACCTGTCATGTAAACATTGTGGGGTGCTGAAA
AGTATCGCGGAGGTCTGTGCCCAGCTGGGGTTGAACAAGTTCGATGTGGG
CCGGGTCATCAACGATATCTCGCGGAAGGTCAAGTctctggaggcggtgg
tcttctcccccgaggacgtggtcgacAAATACGGGGGACAGCTGCGCTTG
CCCCTAGGTTTGCGTGCGGCCGCGGTCGAGGTGATGAAAGCCGCGAAAGA
GATGCCCGGACTGGAAGGGTTACATCCGCAATCTTTAGCAGGTGCGGCAC
TTCTCCTTTTGAGCAACACCAAGGTGGCTCCCCATCTTGTCCTAAATTCA
GCAGCTCAGGAGAAAGGCATGATGAAAATTGAGGTCAAAGACGAGGATCT
TGCGAGCCAAGCGCTTCCTGggctcttcccgccccctcaaCGATCACTGG
AAGACGTGACAGGCGCGACCCTCATGTCTACCGGGACGATCAAGCGGGCG
CATTCCTTGCTGTACGAGCATCGAGAAAAACTGGTGCCGGTTGCATACGC
AGCTCAAATGTTTAGCCATCGCTTAGAGTTGCGGGCAACTTCGGAGCTCA
AGTGA
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Coding sequence (CDS) from alignment at CM002457.1:443156..444310+

>rna1364 ID=rna1364|Name=rna1364|organism=Nannochloropsis gaditana|type=CDS|length=1155bp|location=Sequence derived from alignment at CM002457.1:443156..444310+ (Nannochloropsis gaditana)
ATGACGGATTCAAATGGGATCGCAGCCCTGGCCTCGTTCGGCCAACTTGC
TATTTCAAAGCATGACAtccatcctcacctttttccccctccctgcggtc
gtattctctttttccccttcccggtAGATCATCGCTCAGGCGATGTCGTG
TGTCGCGGTTGCGGGGAGGTGCAAGCGGAACGATTGGTGGACTTGGGCGC
CGAGTGGAATCGATACGATGACAACGACGGGAAGGGCGACCCTTcccgcg
tgggaggggaactGGGGGGTGTCGCCTCTCGGATTTGGGGCGGCACGTCC
GCCTCTGCgccgggcgggagagggagccagGGCATGGGAAAGAAGCGCAA
GGGACAGGGGTCCGCCATGACGGGCGCAGAACTGGCGAACAAGAAGAGCC
GTGCCCAATCCAAGCTGGAAAAGGTGTGCATGTTGCTCTCGGACGCGGTC
CGATCCCTTCACTTGGACGAGCGCGTCACGCAAGTGGGTTTCACGGTGGC
GGACGCAGCCAACACGGAGGGCGCTTTCCGCGGAAAGCCGGAGAATACTC
TGGTGGGCGCGATCTTGTACCTGTCATGTAAACATTGTGGGGTGCTGAAA
AGTATCGCGGAGGTCTGTGCCCAGCTGGGGTTGAACAAGTTCGATGTGGG
CCGGGTCATCAACGATATCTCGCGGAAGGTCAAGTctctggaggcggtgg
tcttctcccccgaggacgtggtcgacAAATACGGGGGACAGCTGCGCTTG
CCCCTAGGTTTGCGTGCGGCCGCGGTCGAGGTGATGAAAGCCGCGAAAGA
GATGCCCGGACTGGAAGGGTTACATCCGCAATCTTTAGCAGGTGCGGCAC
TTCTCCTTTTGAGCAACACCAAGGTGGCTCCCCATCTTGTCCTAAATTCA
GCAGCTCAGGAGAAAGGCATGATGAAAATTGAGGTCAAAGACGAGGATCT
TGCGAGCCAAGCGCTTCCTGggctcttcccgccccctcaaCGATCACTGG
AAGACGTGACAGGCGCGACCCTCATGTCTACCGGGACGATCAAGCGGGCG
CATTCCTTGCTGTACGAGCATCGAGAAAAACTGGTGCCGGTTGCATACGC
AGCTCAAATGTTTAGCCATCGCTTAGAGTTGCGGGCAACTTCGGAGCTCA
AGTGA
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Synonyms
Publications