rna1359, rna1359 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1359
Unique Name	rna1359
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2380
Alignment location	CM002457.1:434009..436461 -

Link to JBrowse

Properties


Property Name	Value
Product	NAD(P)-binding domain protein
Orig transcript id	gnl\|cribi\|Naga_100136g18.3169.mrna
Orig protein id	gnl\|cribi\|Naga_100136g18.3169
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:434009..436461 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100136g18	gene1313	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29318.1	cds1357	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1359	rna1359-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:434009..436461-
coding sequence from alignment at CM002457.1:434009..436461-

mRNA sequence

>rna1359 ID=rna1359|Name=rna1359|organism=Nannochloropsis gaditana|type=mRNA|length=2380bp
CTGTTACCGCTTACATCATTTCAACGCTTTATATCAGCTTCAGAACCTTC
CCAGCCTTAGCGAAGGAGAGCGAGGCCATGCTCACGGGGCGCAAGGCAGC
CAGGTAGTCCGGTAGCGACCACATTCCAGCTATTGAATTACTTCCATTTC
ATCGGCTTCCTGAAGACACCATGGAGGAAGATGCTTCTTCGATCAAGGTA
TGGAATAACAGGCTTGTGGCTTATGTCAAGACTTTGGAGCTTGGAGCAGC
AAGACGAGGTTCTCAGCTTCGATATACCTACAAATCTGTGGCTAAGGCAC
TAGCAAAACATCCAACGCGTGTGACCACAGCTGAGGAGGCTCGGCAGTTA
AAAGGCGTGGGCCCTACAATCGGAAGGCAGCTTGAGAATTTCATCGTCAA
TACACTGCATGCGGAAGCACACGCTCCCAAAAGCCCTTTACCCTCCGATA
GAGCAAAGGCAGATGATAAGGCTGTGAGTGTTGATGAAGCTAGTTTCTCT
GTGGCATATCTCGACGAAATGATGGAGGACCTGCTCGTGGCCTCCCAGAC
TTCCACCTGTAGCGCCAACACGGAAGCTCAATACCCACTCGAGGACCCAA
ACCGTGAAATGGGCACTAACCCTGACACTTGGAGCTCTCGAGTGGATGCG
CCTGGATGCCAATCGACTGATCTAAGCGATGCGAACCTCCTGGTCGTAAG
CGACGATGAATCCCATGAGTGTGAGGGGCACGGGCGGGAGGAGGAGGGAG
GGAAGAACAAGGAGAATTTGAACGTTTTTCCGGGAGCGATTGAACGGTCT
GCGCCGTGGAGCTCACACGAAGCGCGCCGAATACATGTAGTGGATGTCAG
TGACGGCGAAAGTGATGGCGCGATCGGAGGCACGTGCACGGGCTTGGACG
AGGGCGAGGAGGGCGAGGGAGGGAGGGCGACGGGAGGGGAAGGGAAGGAC
GTACATGAAGTCATAGGCACAGGGGGAGAGCGACAGGCATCAGGAAGCTC
TTCACCCCGAGTCCCGGACGGGAAGGGCCGCAAGCGCAAGTTTTTCTCCC
GGCCCGAGTGGCAGGGAGGTGTTGAAGTGGAAGGTGTGATGGGGAAAGGA
TGCCAAGACGTGGTGGGCGGGAGGTGGTGGGAGGAAAGCAAGGTGGCGGA
CGTACAAGGACCCTCCTCGCGGAGCCTTTTGGACAGGCTGGAAGAGACGT
TCGGGGGGACGCGGCCAGAGGAGTGGGAAGTGGTGGCTTTGCTGGACCGC
GTCGAGCACGAGAACAACCCAAGCATCGAAGCCACGCTCCTGCAGGCAGG
GATATGTTGCGAGGTCCGGGTGCTGCGGCTGGCGGATGTTTTGTGGGTGG
CGCGACGGAGGGCGGAGGGAAGGCTCGGAGGGGACGGGGGGGGGCGAGCA
GCGCCCGGCATTGCTGTCGAGCCCGGGAACGCCGGCAGCATGCGGGAGGG
CGGGCATCCCAAGGAGGAGGAGGAAGAGATCATGCTCCGGTACATGATCG
AGCGGAAGACAGTGCCAGACCTGGCATCCAGCATCAAGGACGGTCGGTAC
CGGGAACAGAAGGGCCGCATGCTCGGTGTTGGGAGGGAGATCGATCGCGC
CTTCTATTTGGTGGAGGGGCGCTTGGAGCAATTGAATGACGCGATTCGAC
CGGCGGCCTTGCGAACCGCCCTGATCAGCACCCAGGTCGTCCATGGAATG
CCTGTCTTGCAAACAGCCTCCTTAGACCAGACCATTGCCCTGCTCCAGCG
CATGCATACCCGGATTTCGCACGAGTTCGCGCACTTTCTGCAAGCTGCAT
GTGGGCACAACAGGCTGAATTCGGAAGGTGACTTCTTGCCGGCAACGGAA
TCCTTTGATGGTGTGGCGCAGTCCGAGCGCTTGTCTGAGTACTTGCAGAA
GCACTCGAAGACCTTTCCCTTGCCTGCCTCTCGCATCATCCCCCTGGCCG
AATACCAGCACCTATGCCGGAAGACGGTGGGGAATCTCTCCGTGCGGGCG
ATGTTCACGGCGCAGCTCTGCGCGATAGACAAGGTGAGCGAGGCCAAAAG
CAAGGCCGTGGTCAACGCCTATTCCACCCCATCCCGTCTGGCTCTGGCCA
TGCAATCCATCACGGAGGAAGAGGCAGTAGCTGCCCTGGCGGTCTTGCCT
GTCCCAGGTCAGAGGCAGTCCGTAGGCAGGGTAGCCGCAACCAATATTTA
CCACGTGTATCGATAAATGCGATACGGGGGGTTGAGTTGTTGAGTTGTGG
GGCCAAAACTGCGCAAGAAACATGGACAAAAATGTACACTTGTAGGATGA
GTGCAACTGTGAATGGTGGGAACGGTACGAGCAATTTTTGCTTCACGGAA
ATACAAATCTTTGAAAGCGTAACGTCTTCG

protein sequence of rna1359

>rna1359-protein ID=rna1359-protein|Name=rna1359|organism=Nannochloropsis gaditana|type=polypeptide|length=637bp
MQRSVQAAFLACILTASYIDLGHAFVFPSSRPQSTPCSIVSTSPYTASPD
SRARITIAPSWMVPPSSSSSSSSSTSSSPAAGVTQEKSNRRGGSPASPST
KNSEAPAPGEEESNPPAVDVGIAKALAKPSESRAAELRQAKEAERTKNKK
FLNPIEIPIKAGRAARRALESLGQVEEPAPKNPEDYRLYFDKKFMYAIPA
PGEKTPTVLVVGATGDIGRQVVRKLILKGYRVQVLVRNLYSTTLNLLGTG
VSYVKGDLSDLSSLRTACDGADKVVYVAQAREDGDARTVEYLGLRNLAQA
FQDTRVSDAGKRVATKRTLFKFRKPADRGVWAVATPSAEGAEGAWTVQDE
RSGRPAFVGSLPVGPGGSIVLESKKLGLNLSKFGGLLMLFKAQGDAQTSF
RFVIRTSAYAEQGVQYEIALPLVRNRFTAFRMNFRDFVPMKDGTPYAGVL
GGLGGVTALDPGDVKQFAVMAVREGGAAAGVDAAVANPAFALTMEGIKVF
RAREQADVVLLSSSDITPKTALKSLSEMERDPASFERVERGNYYRAQGEL
AMKNAGLAYCIVRISDFTSSPTEGRPLSVSRSGNNMGLISRPDAATVLIN
CLFNPTVCNTEIYASENPRYGDRDIQRLLNELVELPL

mRNA from alignment at CM002457.1:434009..436461-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1359 ID=rna1359|Name=rna1359|organism=Nannochloropsis gaditana|type=mRNA|length=2453bp|location=Sequence derived from alignment at CM002457.1:434009..436461- (Nannochloropsis gaditana)
TATACAGAACGCCACAAGGTCGTAGGCGCGGTGGTGAATTCGTTACTCCG
TGGTCTCAAGAAAAAATCAAGGCCTAAGTTTCATTATTTCCTCGCGTCGC
ACACCTCCTCACGCGTGAAACCGAGCCTGCAGGAGCTTCCGCCTTTGATT
TAGAGCGACAGCAGTAAAGCCATGCAGCGCTCTGTGCAAGCAGCCTTTCT
AGCCTGTATCTTAACTGCTTCCTACATAGACCTAGGGCATGCTTTTGTTT
TCCCCTCTTCCCGGCCACAGAGCACCCCATGTAGCATAGTCTCTACCTCC
CCGTACACCGCCAGTCCTGATAGCAGAGCAAGAATAACTATCGCACCCTC
CTGGATGGTGCCCCCTTCTTCATCGTCATCCTCCTCATCTTCTACGTCGT
CTTCGCCTGCAGCGGGCGTCACTCAGGAAAAAAGCAATCGGCGCGGCGGC
AGCCCAGCATCTCCCTCTACTAAAAACTCGGAGGCACCTGCTCCGGGGGA
GGAAGAAAGCAATCCACCCGCAGTGGACGTGGGAATTGCCAAAGCATTAG
CAAAGCCCAGTGAATCTCGCGCTGCAGAGTTGCGACAGGCAAAGGAGGCG
GAGCGGACCAAGAACAAGAAGTTTTTGAACCCGATCGAGATTCCTATCAA
GGCAGGGAGGGCGGCTCGGCGGGCGCTGGAAAGCCTGGGGCAGGTGGAAG
AGCCGGCGCCGAAAAATCCCGAGGATTACAGGTTATACTTTGACAAGAAA
TTCATGTACGCGATTCCAGCCCCCGGAGAGAAAACGCCCACGGTGCTGGT
GGTGGGTGCGACGGGGGACATTGGTCGGCAGGTGGTGCGGAAGCTCATTT
TGAAAGGGTACCGGGTGCAGGTCTTGGTCCGCAATTTGTACTCCACCACT
TTGAATTTGCTGGGCACGGGGGTGTCGTACGTGAAAGGCGACCTGTCCGA
CCTGTCCTCCCTGCGCACGGCTTGCGACGGCGCCGACAAGGTGGTGTACG
TGGCGCAGGCCCGCGAGGACGGCGATGCCCGTACCGTGGAATACCTGGGA
CTGCGTAATTTGGCGCAAGCCTTCCAGGATACCCGGGTGTCTGATGCGGG
TAAACGGGTGGCGACCAAGCGGACCTTGTTCAAGTTCCGGAAGCCGGCGG
ATCGGGGTGTGTGGGCCGTGGCCACGCCGAGCGCGGAGGGCGCGGAGGGC
GCGTGGACTGTGCAGGATGAGCGATCGGGCCGTCCCGCATTTGTGGGATC
CCTGCCTGTGGGTCCCGGGGGCTCAATTGTGCTCGAGAGCAAGAAACTGG
GGCTGAATCTGTCCAAATTCGGGGGTTTGCTGATGTTGTTCAAGGCCCAA
GGGGACGCGCAGACGTCCTTCCGCTTCGTAATTCGGACGAGCGCCTATGC
CGAGCAGGGAGTGCAGTACGAGATAGCCTTGCCCTTGGTCCGCAACCGCT
TTACCGCCTTCCGGATGAATTTTCGGGACTTTGTGCCCATGAAAGACGGG
ACGCCGTACGCGGGCGTCTTGGGGGGGCTGGGCGGGGTGACGGCGCTGGA
TCCGGGGGACGTGAAGCAGTTTGCCGTCATGGCCGTGAGGGAGGGAGGGG
CCGCCGCGGGCGTGGATGCAGCGGTGGCCAATCCTGCTTTCGCCTTGACC
ATGGAGGGAATCAAGGTGTTCCGGGCCCGGGAGCAAGCCGACGTGGTGCT
CCTGTCCTCCTCCGACATCACGCCCAAGACCGCCTTGAAGAGTCTGTCGG
AGATGGAGCGAGACCCGGCCTCCTTCGAGCGGGTCGAGCGCGGGAATTAC
TACAGGGCACAGGGGGAACTGGCTATGAAGAACGCGGGGCTGGCTTATTG
CATCGTCCGCATCTCGGATTTCACGAGCAGTCCCACGGAGGGACGCCCGC
TGAGCGTCTCCCGGAGTGGCAACAACATGGGCCTTATTTCCAGACCGGAC
GCGGCCACGGTCCTCATAAATTGTCTGTTCAACCCGACGGTCTGCAACAC
AGAGATCTACGCGTCCGAGAATCCCAGGTACGGCGACCGGGACATCCAAA
GGTTGCTGAACGAATTAGTAGAGCTGCCTCTGTGAGCCTGGGGTATCGAG
GACAGGTCACTCGACACACGGCTTCCAGTAATGGCGGGTCTCGTCGGTGG
TGAGGGGTGGAAGAATGTGGCATGTGGATGGAGGCTTGAGGGCAATCCTG
GATGTGGCTGCAGGGAGGGAAGTGTCCGCTAGTTAGACGCGTGCTGGCGC
AAACACCGACCGCGAAAATAATGACTGACAAGGGGGGGGGATGTCTGGGG
GGATGTCTGGAGGGAGTTTAGGTGACAAGCGCATCTAAAGAAGATGAGGA
CCTGCATAAAAGGCGTGGTACGCCCGCAAATGGTCGAAGACGTTACGCTT
TCAAAGATTTGTATTTCCGTGAAGCAAAAATTGCTCGTACCGTTCCCACC
ATT

Coding sequence (CDS) from alignment at CM002457.1:434009..436461-

>rna1359 ID=rna1359|Name=rna1359|organism=Nannochloropsis gaditana|type=CDS|length=1914bp|location=Sequence derived from alignment at CM002457.1:434009..436461- (Nannochloropsis gaditana)
ATGCAGCGCTCTGTGCAAGCAGCCTTTCTAGCCTGTATCTTAACTGCTTC
CTACATAGACCTAGGGCATGCTTTTGTTTTCCCCTCTTCCCGGCCACAGA
GCACCCCATGTAGCATAGTCTCTACCTCCCCGTACACCGCCAGTCCTGAT
AGCAGAGCAAGAATAACTATCGCACCCTCCTGGATGGTGCCCCCTTCTTC
ATCGTCATCCTCCTCATCTTCTACGTCGTCTTCGCCTGCAGCGGGCGTCA
CTCAGGAAAAAAGCAATCGGCGCGGCGGCAGCCCAGCATCTCCCTCTACT
AAAAACTCGGAGGCACCTGCTCCGGGGGAGGAAGAAAGCAATCCACCCGC
AGTGGACGTGGGAATTGCCAAAGCATTAGCAAAGCCCAGTGAATCTCGCG
CTGCAGAGTTGCGACAGGCAAAGGAGGCGGAGCGGACCAAGAACAAGAAG
TTTTTGAACCCGATCGAGATTCCTATCAAGGCAGGGAGGGCGGCTCGGCG
GGCGCTGGAAAGCCTGGGGCAGGTGGAAGAGCCGGCGCCGAAAAATCCCG
AGGATTACAGGTTATACTTTGACAAGAAATTCATGTACGCGATTCCAGCC
CCCGGAGAGAAAACGCCCACGGTGCTGGTGGTGGGTGCGACGGGGGACAT
TGGTCGGCAGGTGGTGCGGAAGCTCATTTTGAAAGGGTACCGGGTGCAGG
TCTTGGTCCGCAATTTGTACTCCACCACTTTGAATTTGCTGGGCACGGGG
GTGTCGTACGTGAAAGGCGACCTGTCCGACCTGTCCTCCCTGCGCACGGC
TTGCGACGGCGCCGACAAGGTGGTGTACGTGGCGCAGGCCCGCGAGGACG
GCGATGCCCGTACCGTGGAATACCTGGGACTGCGTAATTTGGCGCAAGCC
TTCCAGGATACCCGGGTGTCTGATGCGGGTAAACGGGTGGCGACCAAGCG
GACCTTGTTCAAGTTCCGGAAGCCGGCGGATCGGGGTGTGTGGGCCGTGG
CCACGCCGAGCGCGGAGGGCGCGGAGGGCGCGTGGACTGTGCAGGATGAG
CGATCGGGCCGTCCCGCATTTGTGGGATCCCTGCCTGTGGGTCCCGGGGG
CTCAATTGTGCTCGAGAGCAAGAAACTGGGGCTGAATCTGTCCAAATTCG
GGGGTTTGCTGATGTTGTTCAAGGCCCAAGGGGACGCGCAGACGTCCTTC
CGCTTCGTAATTCGGACGAGCGCCTATGCCGAGCAGGGAGTGCAGTACGA
GATAGCCTTGCCCTTGGTCCGCAACCGCTTTACCGCCTTCCGGATGAATT
TTCGGGACTTTGTGCCCATGAAAGACGGGACGCCGTACGCGGGCGTCTTG
GGGGGGCTGGGCGGGGTGACGGCGCTGGATCCGGGGGACGTGAAGCAGTT
TGCCGTCATGGCCGTGAGGGAGGGAGGGGCCGCCGCGGGCGTGGATGCAG
CGGTGGCCAATCCTGCTTTCGCCTTGACCATGGAGGGAATCAAGGTGTTC
CGGGCCCGGGAGCAAGCCGACGTGGTGCTCCTGTCCTCCTCCGACATCAC
GCCCAAGACCGCCTTGAAGAGTCTGTCGGAGATGGAGCGAGACCCGGCCT
CCTTCGAGCGGGTCGAGCGCGGGAATTACTACAGGGCACAGGGGGAACTG
GCTATGAAGAACGCGGGGCTGGCTTATTGCATCGTCCGCATCTCGGATTT
CACGAGCAGTCCCACGGAGGGACGCCCGCTGAGCGTCTCCCGGAGTGGCA
ACAACATGGGCCTTATTTCCAGACCGGACGCGGCCACGGTCCTCATAAAT
TGTCTGTTCAACCCGACGGTCTGCAACACAGAGATCTACGCGTCCGAGAA
TCCCAGGTACGGCGACCGGGACATCCAAAGGTTGCTGAACGAATTAGTAG
AGCTGCCTCTGTGA

Synonyms

Publications